Wall clock time and date at job start Tue Mar 31 2020 03:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.48304 * 2 1 4 4 C 1.53233 * 109.49361 * 120.03426 * 2 1 3 5 5 C 1.51275 * 108.53380 * 65.35656 * 4 2 1 6 6 O 1.20751 * 120.84923 * 231.36445 * 5 4 2 7 7 C 1.51273 * 118.29639 * 51.35096 * 5 4 2 8 8 C 1.53229 * 108.53606 * 308.64663 * 7 5 4 9 9 C 1.52958 * 109.40567 * 54.63252 * 8 7 5 10 10 H 1.09000 * 109.35306 * 56.47056 * 9 8 7 11 11 C 1.50689 * 109.41280 * 176.29251 * 9 8 7 12 12 O 1.21282 * 119.99920 * 120.35389 * 11 9 8 13 13 N 1.34773 * 120.00382 * 300.35046 * 11 9 8 14 14 C 1.46498 * 120.00255 * 180.02562 * 13 11 9 15 15 C 1.50709 * 109.47322 * 180.02562 * 14 13 11 16 16 O 1.21294 * 119.99448 * 0.02562 * 15 14 13 17 17 N 1.34779 * 120.00029 * 180.02562 * 15 14 13 18 18 C 1.37092 * 119.99650 * 180.02562 * 17 15 14 19 19 H 1.08006 * 120.00578 * 359.97438 * 18 17 15 20 20 C 1.38947 * 120.00010 * 180.02562 * 18 17 15 21 21 N 1.31409 * 120.00293 * 179.97438 * 20 18 17 22 22 Si 1.86810 * 119.99821 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.46775 * 89.99913 * 22 20 18 24 24 H 1.48505 * 109.46819 * 209.99949 * 22 20 18 25 25 H 1.48498 * 109.46678 * 330.00009 * 22 20 18 26 26 H 1.09001 * 109.47130 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46995 * 300.00031 * 1 2 3 28 28 H 1.09001 * 109.47282 * 59.99778 * 1 2 3 29 29 H 1.09001 * 109.62318 * 185.07139 * 4 2 1 30 30 H 1.08998 * 109.62324 * 305.64509 * 4 2 1 31 31 H 1.09002 * 109.62109 * 188.93339 * 7 5 4 32 32 H 1.09002 * 109.78395 * 68.46266 * 7 5 4 33 33 H 1.09002 * 109.48152 * 294.64956 * 8 7 5 34 34 H 1.09001 * 109.48733 * 174.61524 * 8 7 5 35 35 H 0.97000 * 119.99787 * 0.02562 * 13 11 9 36 36 H 1.08998 * 109.47456 * 300.00156 * 14 13 11 37 37 H 1.08998 * 109.47182 * 60.00347 * 14 13 11 38 38 H 0.96998 * 119.99959 * 0.02562 * 17 15 14 39 39 H 0.96998 * 120.00337 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0414 -0.7230 1.2505 5 6 1.6380 -2.1784 1.1632 6 8 1.0648 -2.7180 2.0788 7 6 1.9710 -2.9402 -0.1005 8 6 1.4622 -2.1368 -1.3020 9 6 2.0401 -0.7215 -1.2485 10 1 3.1282 -0.7767 -1.2160 11 6 1.6138 0.0403 -2.4767 12 8 0.9660 1.0594 -2.3637 13 7 1.9522 -0.4107 -3.7008 14 6 1.5382 0.3303 -4.8948 15 6 2.0396 -0.3800 -6.1259 16 8 2.6794 -1.4046 -6.0165 17 7 1.7770 0.1234 -7.3483 18 6 2.2327 -0.5230 -8.4681 19 1 2.8024 -1.4354 -8.3708 20 6 1.9625 -0.0038 -9.7282 21 7 2.3997 -0.6231 -10.8016 22 14 0.9777 1.5747 -9.8966 23 1 1.9013 2.7375 -9.8884 24 1 0.2213 1.5522 -11.1744 25 1 0.0278 1.6889 -8.7609 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 3.1276 -0.6463 1.2993 30 1 1.5995 -0.2733 2.1397 31 1 1.4840 -3.9151 -0.0793 32 1 3.0503 -3.0718 -0.1785 33 1 0.3738 -2.0864 -1.2710 34 1 1.7776 -2.6236 -2.2249 35 1 2.4700 -1.2260 -3.7912 36 1 0.4502 0.3886 -4.9273 37 1 1.9551 1.3368 -4.8606 38 1 1.2657 0.9430 -7.4357 39 1 2.2114 -0.2605 -11.6814 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323751051.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:18 Heat of formation + Delta-G solvation = -148.841015 kcal Electronic energy + Delta-G solvation = -22104.862143 eV Core-core repulsion = 18624.907608 eV Total energy + Delta-G solvation = -3479.954535 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.79171 -40.64343 -39.93313 -37.53603 -36.27653 -35.36314 -33.82703 -32.98982 -30.88985 -29.25151 -28.02622 -26.11579 -24.10056 -22.77735 -21.45110 -21.20394 -20.52548 -19.41922 -18.48653 -17.54390 -17.08822 -16.92489 -16.76076 -16.42269 -16.23352 -15.98649 -15.51774 -15.28043 -15.10812 -14.75809 -14.62743 -14.29705 -14.00372 -13.86671 -13.52644 -13.30424 -12.96091 -12.88878 -12.63044 -12.57351 -12.44080 -12.01803 -12.00400 -11.77952 -11.56956 -11.46748 -10.70855 -10.62463 -10.36544 -10.32144 -10.09107 -8.44947 -6.06743 0.97180 1.31372 1.34290 1.44032 1.63273 1.81988 2.06249 2.20905 2.90550 3.11704 3.16443 3.50420 3.64535 3.73869 3.98460 4.01727 4.21553 4.24328 4.27695 4.38647 4.44260 4.46019 4.57402 4.71301 4.78589 4.86843 4.91761 5.08016 5.11863 5.16817 5.29504 5.36095 5.46661 5.51387 5.89558 6.49099 6.51996 6.56824 6.79752 7.21497 7.32253 7.79701 8.71514 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.038395 B = 0.003233 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.095195 B = 8658.072395 C = 9148.525966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.058 4.058 3 H 0.093 0.907 4 C -0.160 4.160 5 C 0.365 3.635 6 O -0.504 6.504 7 C -0.163 4.163 8 C -0.109 4.109 9 C -0.101 4.101 10 H 0.136 0.864 11 C 0.519 3.481 12 O -0.569 6.569 13 N -0.710 5.710 14 C 0.117 3.883 15 C 0.445 3.555 16 O -0.613 6.613 17 N -0.580 5.580 18 C -0.330 4.330 19 H 0.064 0.936 20 C -0.008 4.008 21 N -0.927 5.927 22 Si 0.958 3.042 23 H -0.257 1.257 24 H -0.275 1.275 25 H -0.233 1.233 26 H 0.046 0.954 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.132 0.868 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.132 0.868 33 H 0.066 0.934 34 H 0.090 0.910 35 H 0.414 0.586 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.391 0.609 39 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.478 3.551 21.115 21.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.077 4.077 3 H 0.111 0.889 4 C -0.197 4.197 5 C 0.244 3.756 6 O -0.380 6.380 7 C -0.201 4.201 8 C -0.146 4.146 9 C -0.122 4.122 10 H 0.153 0.847 11 C 0.307 3.693 12 O -0.448 6.448 13 N -0.364 5.364 14 C -0.011 4.011 15 C 0.233 3.767 16 O -0.499 6.499 17 N -0.220 5.220 18 C -0.459 4.459 19 H 0.082 0.918 20 C -0.208 4.208 21 N -0.567 5.567 22 Si 0.778 3.222 23 H -0.181 1.181 24 H -0.200 1.200 25 H -0.156 1.156 26 H 0.064 0.936 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.149 0.851 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.150 0.850 33 H 0.085 0.915 34 H 0.108 0.892 35 H 0.252 0.748 36 H 0.118 0.882 37 H 0.122 0.878 38 H 0.227 0.773 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.796 3.290 21.485 21.809 hybrid contribution -0.273 0.232 -1.035 1.096 sum -2.069 3.522 20.450 20.854 Atomic orbital electron populations 1.22093 0.95678 1.01209 1.02863 1.20806 0.95866 0.99960 0.91051 0.88862 1.22419 1.05214 0.92623 0.99454 1.25353 0.72347 0.91221 0.86693 1.90407 1.33560 1.72675 1.41386 1.22315 1.05793 0.99547 0.92412 1.21570 1.01369 0.92750 0.98944 1.21474 1.04424 0.95111 0.91184 0.84652 1.21004 0.78675 0.85038 0.84565 1.90653 1.40665 1.26528 1.86955 1.45805 1.56658 1.29438 1.04522 1.20865 1.01468 0.96071 0.82682 1.20570 0.84228 0.86868 0.85074 1.90527 1.45300 1.27462 1.86575 1.41951 1.49906 1.25002 1.05114 1.19031 1.33701 1.08896 0.84315 0.91764 1.26053 0.98381 1.02485 0.93885 1.69777 1.46193 1.41691 0.99018 0.85458 0.79221 0.77682 0.79832 1.18093 1.20016 1.15591 0.93553 0.92225 0.91826 0.85061 0.89017 0.89143 0.85027 0.91497 0.89168 0.74752 0.88155 0.87787 0.77287 0.90964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.09 8.31 71.98 0.60 -2.49 16 2 C -0.06 -0.87 2.33 -10.73 -0.02 -0.89 16 3 H 0.09 1.44 8.00 -2.39 -0.02 1.42 16 4 C -0.16 -1.89 5.65 30.11 0.17 -1.72 16 5 C 0.37 6.00 5.75 29.47 0.17 6.17 16 6 O -0.50 -12.54 17.89 -1.42 -0.03 -12.56 16 7 C -0.16 -1.99 6.17 30.11 0.19 -1.80 16 8 C -0.11 -1.56 4.88 30.66 0.15 -1.41 16 9 C -0.10 -1.52 2.20 -11.57 -0.03 -1.55 16 10 H 0.14 1.29 8.14 -2.39 -0.02 1.27 16 11 C 0.52 12.04 6.87 87.65 0.60 12.64 16 12 O -0.57 -16.40 13.88 -3.04 -0.04 -16.45 16 13 N -0.71 -18.37 5.40 -466.80 -2.52 -20.89 16 14 C 0.12 3.46 6.15 85.64 0.53 3.99 16 15 C 0.45 18.25 7.85 87.66 0.69 18.94 16 16 O -0.61 -29.77 15.24 -3.07 -0.05 -29.82 16 17 N -0.58 -25.61 5.09 -306.97 -1.56 -27.17 16 18 C -0.33 -18.27 10.16 84.04 0.85 -17.42 16 19 H 0.06 4.20 7.39 -2.91 -0.02 4.18 16 20 C -0.01 -0.43 5.50 84.93 0.47 0.03 16 21 N -0.93 -53.69 13.96 21.66 0.30 -53.39 16 22 Si 0.96 37.25 27.74 68.60 1.90 39.15 16 23 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 24 H -0.28 -10.71 7.11 99.48 0.71 -10.00 16 25 H -0.23 -7.67 6.52 99.48 0.65 -7.02 16 26 H 0.05 0.90 5.61 -2.39 -0.01 0.88 16 27 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.06 1.51 5.83 -2.39 -0.01 1.50 16 29 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.13 0.89 8.14 -2.39 -0.02 0.88 16 33 H 0.07 1.14 6.20 -2.39 -0.01 1.13 16 34 H 0.09 1.27 7.43 -2.39 -0.02 1.25 16 35 H 0.41 10.64 6.78 -92.71 -0.63 10.01 16 36 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 37 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 38 H 0.39 14.48 5.76 -92.71 -0.53 13.95 16 39 H 0.28 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -74.52 318.17 2.24 -72.28 By element: Atomic # 1 Polarization: 34.48 SS G_CDS: -0.13 Total: 34.35 kcal Atomic # 6 Polarization: 10.13 SS G_CDS: 4.36 Total: 14.49 kcal Atomic # 7 Polarization: -97.66 SS G_CDS: -3.78 Total: -101.44 kcal Atomic # 8 Polarization: -58.71 SS G_CDS: -0.11 Total: -58.83 kcal Atomic # 14 Polarization: 37.25 SS G_CDS: 1.90 Total: 39.15 kcal Total: -74.52 2.24 -72.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323751051.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.560 kcal (2) G-P(sol) polarization free energy of solvation -74.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds