Wall clock time and date at job start Tue Mar 31 2020 03:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34776 * 120.00166 * 2 1 4 4 O 1.21278 * 119.99560 * 355.05303 * 3 2 1 5 5 C 1.50701 * 120.00293 * 175.05230 * 3 2 1 6 6 C 1.50693 * 115.54975 * 299.32856 * 5 3 2 7 7 O 1.21289 * 120.00237 * 100.19185 * 6 5 3 8 8 N 1.34783 * 120.00361 * 280.18920 * 6 5 3 9 9 C 1.47425 * 125.64348 * 354.92467 * 8 6 5 10 10 C 1.54906 * 104.83105 * 155.83370 * 9 8 6 11 11 C 1.55158 * 101.58340 * 37.01131 * 10 9 8 12 12 O 1.42893 * 110.71938 * 82.85873 * 11 10 9 13 13 C 1.50700 * 110.72075 * 205.95760 * 11 10 9 14 14 H 1.08005 * 119.99925 * 116.15414 * 13 11 10 15 15 C 1.37873 * 120.00287 * 296.15507 * 13 11 10 16 16 N 1.31522 * 119.99438 * 0.02562 * 15 13 11 17 17 Si 1.86798 * 120.00358 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46863 * 60.00154 * 17 15 13 19 19 H 1.48497 * 109.47162 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46949 * 300.00048 * 17 15 13 21 21 C 1.47017 * 125.65344 * 174.87923 * 8 6 5 22 22 C 1.53000 * 117.51867 * 85.02935 * 5 3 2 23 23 C 1.52996 * 117.49822 * 153.65908 * 5 3 2 24 24 H 1.09003 * 109.47262 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47341 * 299.99729 * 1 2 3 26 26 H 1.08999 * 109.47378 * 59.99984 * 1 2 3 27 27 H 0.96999 * 120.00112 * 180.02562 * 2 1 3 28 28 H 1.09009 * 110.36532 * 36.99829 * 9 8 6 29 29 H 1.08992 * 110.36710 * 274.67329 * 9 8 6 30 30 H 1.09000 * 111.00868 * 278.93709 * 10 9 8 31 31 H 1.09000 * 111.04108 * 155.09687 * 10 9 8 32 32 H 0.96697 * 114.00364 * 61.45792 * 12 11 10 33 33 H 0.96999 * 119.99332 * 180.02562 * 16 15 13 34 34 H 1.09005 * 109.88121 * 61.68161 * 21 8 6 35 35 H 1.09002 * 109.88264 * 300.51991 * 21 8 6 36 36 H 1.08994 * 117.49936 * 214.97614 * 22 5 3 37 37 H 1.09005 * 117.49788 * 359.97438 * 22 5 3 38 38 H 1.09005 * 117.50104 * 359.97416 * 23 5 3 39 39 H 1.09001 * 117.50169 * 144.99876 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5358 2.2155 -0.0906 5 6 3.6417 1.1696 0.1126 6 6 4.2002 0.5565 1.3707 7 8 4.6339 -0.5761 1.3527 8 7 4.2179 1.2666 2.5162 9 6 3.8237 2.6802 2.6568 10 6 3.4250 2.8344 4.1457 11 6 4.4612 1.9135 4.8427 12 8 5.6979 2.6018 5.0389 13 6 3.9233 1.4030 6.1546 14 1 3.7535 0.3455 6.2937 15 6 3.6481 2.2857 7.1773 16 7 3.8545 3.5735 7.0076 17 14 2.9821 1.6528 8.8037 18 1 3.9554 0.7037 9.4013 19 1 2.7717 2.7941 9.7302 20 1 1.6905 0.9574 8.5727 21 6 4.6327 0.7597 3.8324 22 6 4.4474 0.9950 -1.1763 23 6 4.3930 2.3599 -0.4871 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.9500 -0.8400 -0.0004 28 1 2.9739 2.9031 2.0115 29 1 4.6632 3.3335 2.4193 30 1 2.4089 2.4789 4.3170 31 1 3.5361 3.8673 4.4756 32 1 5.6281 3.3825 5.6052 33 1 3.6612 4.1946 7.7272 34 1 5.6771 0.4494 3.7978 35 1 4.0031 -0.0822 4.1206 36 1 5.3814 0.4366 -1.1143 37 1 3.8905 0.8779 -2.1060 38 1 3.8004 3.1410 -0.9634 39 1 5.2914 2.6995 0.0285 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326357967.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:33:24 Heat of formation + Delta-G solvation = -90.227736 kcal Electronic energy + Delta-G solvation = -23277.059696 eV Core-core repulsion = 19799.646824 eV Total energy + Delta-G solvation = -3477.412872 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.62317 -38.98982 -37.45544 -35.96136 -34.62916 -34.33275 -32.20768 -29.79898 -28.43244 -27.68004 -25.66058 -24.03060 -22.59632 -22.31634 -20.92945 -19.70535 -19.06536 -17.68123 -17.11729 -16.24546 -15.87103 -15.69328 -15.17639 -14.96316 -14.82420 -14.27673 -14.22933 -13.77731 -13.21051 -13.03095 -12.88302 -12.40764 -12.24436 -12.06383 -11.72987 -11.64118 -11.40140 -11.36042 -11.12512 -10.88436 -10.64477 -10.63132 -10.52292 -10.13268 -10.03720 -9.49557 -9.36608 -9.22560 -8.68182 -8.24545 -8.09953 -6.30707 -4.38090 2.35174 2.79616 3.08113 3.20141 3.21471 3.25727 3.29875 3.77290 4.25174 4.55947 4.61101 4.72065 4.85183 4.97223 5.11209 5.38998 5.44202 5.53191 5.59199 5.67460 5.74621 5.75252 5.94320 5.97960 6.03056 6.22406 6.27957 6.40347 6.62188 6.86329 6.93050 7.27435 7.32160 7.34295 7.71303 7.96128 7.99107 8.10737 8.44064 8.63487 9.28890 9.39042 10.77340 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.021943 B = 0.005122 C = 0.004762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.720305 B = 5465.630869 C = 5878.333665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.728 5.728 3 C 0.563 3.437 4 O -0.528 6.528 5 C -0.190 4.190 6 C 0.562 3.438 7 O -0.546 6.546 8 N -0.596 5.596 9 C 0.093 3.907 10 C -0.135 4.135 11 C 0.248 3.752 12 O -0.585 6.585 13 C -0.536 4.536 14 H 0.063 0.937 15 C 0.073 3.927 16 N -0.896 5.896 17 Si 0.904 3.096 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.275 1.275 21 C 0.122 3.878 22 C -0.130 4.130 23 C -0.131 4.131 24 H 0.076 0.924 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.407 0.593 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.384 0.616 33 H 0.269 0.731 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.111 0.889 37 H 0.105 0.895 38 H 0.113 0.887 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.228 -2.819 -13.374 14.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.380 5.380 3 C 0.348 3.652 4 O -0.403 6.403 5 C -0.197 4.197 6 C 0.348 3.652 7 O -0.425 6.425 8 N -0.327 5.327 9 C -0.029 4.029 10 C -0.174 4.174 11 C 0.208 3.792 12 O -0.395 6.395 13 C -0.574 4.574 14 H 0.082 0.918 15 C -0.129 4.129 16 N -0.535 5.535 17 Si 0.731 3.269 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.201 1.201 21 C 0.001 3.999 22 C -0.168 4.168 23 C -0.168 4.168 24 H 0.095 0.905 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.242 0.758 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.106 0.894 32 H 0.235 0.765 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.129 0.871 37 H 0.124 0.876 38 H 0.132 0.868 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.262 -2.994 -13.762 14.457 hybrid contribution -0.519 -0.201 1.380 1.488 sum -3.781 -3.195 -12.382 13.335 Atomic orbital electron populations 1.21572 0.79175 1.02402 1.02440 1.45720 1.07856 1.08870 1.75509 1.19020 0.86870 0.83766 0.75562 1.90704 1.69308 1.31437 1.48900 1.21392 0.92629 1.09171 0.96484 1.18579 0.79300 0.85051 0.82263 1.90675 1.48472 1.18503 1.84822 1.48586 1.62956 1.13167 1.07980 1.22588 0.99133 0.80994 1.00183 1.23314 1.00675 1.02912 0.90504 1.19442 0.81619 0.86842 0.91287 1.86109 1.33673 1.46535 1.73160 1.21458 1.43868 0.94336 0.97742 0.91840 1.24978 0.94225 0.94759 0.98982 1.69638 1.48561 1.01635 1.33705 0.86460 0.79478 0.78441 0.82515 1.19970 1.21063 1.20093 1.22131 0.99625 0.97899 0.80253 1.23050 1.01117 0.99841 0.92755 1.23096 1.01261 0.91349 1.01129 0.90494 0.91969 0.92114 0.75833 0.91408 0.91737 0.91564 0.89378 0.76497 0.92069 0.91803 0.90945 0.87057 0.87650 0.86836 0.87283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.90 10.71 59.85 0.64 1.54 16 2 N -0.73 -9.15 5.71 -67.08 -0.38 -9.53 16 3 C 0.56 8.59 6.75 -10.99 -0.07 8.52 16 4 O -0.53 -9.35 16.29 5.56 0.09 -9.26 16 5 C -0.19 -2.82 1.36 -156.82 -0.21 -3.03 16 6 C 0.56 10.38 6.99 -10.99 -0.08 10.30 16 7 O -0.55 -11.20 17.33 5.55 0.10 -11.11 16 8 N -0.60 -11.88 3.33 -170.52 -0.57 -12.45 16 9 C 0.09 1.79 6.20 -2.53 -0.02 1.78 16 10 C -0.14 -2.99 5.56 -24.58 -0.14 -3.13 16 11 C 0.25 5.98 0.85 -89.94 -0.08 5.91 16 12 O -0.59 -14.62 13.06 -35.23 -0.46 -15.08 16 13 C -0.54 -13.96 8.22 -34.44 -0.28 -14.24 16 14 H 0.06 1.65 7.56 -52.48 -0.40 1.25 16 15 C 0.07 1.88 5.29 -17.82 -0.09 1.78 16 16 N -0.90 -22.98 10.69 55.43 0.59 -22.39 16 17 Si 0.90 20.20 29.54 -169.99 -5.02 15.18 16 18 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 19 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 20 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 21 C 0.12 2.74 6.23 -3.07 -0.02 2.72 16 22 C -0.13 -1.49 9.86 -26.73 -0.26 -1.75 16 23 C -0.13 -1.64 9.11 -26.73 -0.24 -1.88 16 24 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.41 4.59 8.83 -40.82 -0.36 4.23 16 28 H 0.07 1.25 6.99 -51.92 -0.36 0.89 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.07 1.52 8.04 -51.93 -0.42 1.10 16 31 H 0.09 2.01 7.64 -51.93 -0.40 1.62 16 32 H 0.38 9.61 7.28 45.56 0.33 9.95 16 33 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 34 H 0.06 1.47 8.07 -51.93 -0.42 1.05 16 35 H 0.07 1.64 7.66 -51.93 -0.40 1.24 16 36 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.11 1.35 7.91 -51.93 -0.41 0.94 16 39 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 329.65 15.07 4.97 4.97 Total: -1.00 -29.83 329.65 -6.46 -36.29 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: -4.92 Total: 14.87 kcal Atomic # 6 Polarization: 9.36 SS G_CDS: -0.85 Total: 8.50 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: -0.36 Total: -44.38 kcal Atomic # 8 Polarization: -35.17 SS G_CDS: -0.27 Total: -35.44 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.83 -6.46 -36.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326357967.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.934 kcal (2) G-P(sol) polarization free energy of solvation -29.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds