Wall clock time and date at job start Tue Mar 31 2020 03:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34776 * 120.00166 * 2 1 4 4 O 1.21278 * 119.99560 * 355.05303 * 3 2 1 5 5 C 1.50701 * 120.00293 * 175.05230 * 3 2 1 6 6 C 1.50693 * 115.54975 * 299.32856 * 5 3 2 7 7 O 1.21289 * 120.00237 * 100.19185 * 6 5 3 8 8 N 1.34783 * 120.00361 * 280.18920 * 6 5 3 9 9 C 1.47425 * 125.64348 * 354.92467 * 8 6 5 10 10 C 1.54906 * 104.83105 * 155.83370 * 9 8 6 11 11 C 1.55158 * 101.58340 * 37.01131 * 10 9 8 12 12 O 1.42893 * 110.71938 * 82.85873 * 11 10 9 13 13 C 1.50700 * 110.72075 * 205.95760 * 11 10 9 14 14 H 1.08005 * 119.99925 * 116.15414 * 13 11 10 15 15 C 1.37873 * 120.00287 * 296.15507 * 13 11 10 16 16 N 1.31522 * 119.99438 * 0.02562 * 15 13 11 17 17 Si 1.86798 * 120.00358 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46863 * 60.00154 * 17 15 13 19 19 H 1.48497 * 109.47162 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46949 * 300.00048 * 17 15 13 21 21 C 1.47017 * 125.65344 * 174.87923 * 8 6 5 22 22 C 1.53000 * 117.51867 * 85.02935 * 5 3 2 23 23 C 1.52996 * 117.49822 * 153.65908 * 5 3 2 24 24 H 1.09003 * 109.47262 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47341 * 299.99729 * 1 2 3 26 26 H 1.08999 * 109.47378 * 59.99984 * 1 2 3 27 27 H 0.96999 * 120.00112 * 180.02562 * 2 1 3 28 28 H 1.09009 * 110.36532 * 36.99829 * 9 8 6 29 29 H 1.08992 * 110.36710 * 274.67329 * 9 8 6 30 30 H 1.09000 * 111.00868 * 278.93709 * 10 9 8 31 31 H 1.09000 * 111.04108 * 155.09687 * 10 9 8 32 32 H 0.96697 * 114.00364 * 61.45792 * 12 11 10 33 33 H 0.96999 * 119.99332 * 180.02562 * 16 15 13 34 34 H 1.09005 * 109.88121 * 61.68161 * 21 8 6 35 35 H 1.09002 * 109.88264 * 300.51991 * 21 8 6 36 36 H 1.08994 * 117.49936 * 214.97614 * 22 5 3 37 37 H 1.09005 * 117.49788 * 359.97438 * 22 5 3 38 38 H 1.09005 * 117.50104 * 359.97416 * 23 5 3 39 39 H 1.09001 * 117.50169 * 144.99876 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5358 2.2155 -0.0906 5 6 3.6417 1.1696 0.1126 6 6 4.2002 0.5565 1.3707 7 8 4.6339 -0.5761 1.3527 8 7 4.2179 1.2666 2.5162 9 6 3.8237 2.6802 2.6568 10 6 3.4250 2.8344 4.1457 11 6 4.4612 1.9135 4.8427 12 8 5.6979 2.6018 5.0389 13 6 3.9233 1.4030 6.1546 14 1 3.7535 0.3455 6.2937 15 6 3.6481 2.2857 7.1773 16 7 3.8545 3.5735 7.0076 17 14 2.9821 1.6528 8.8037 18 1 3.9554 0.7037 9.4013 19 1 2.7717 2.7941 9.7302 20 1 1.6905 0.9574 8.5727 21 6 4.6327 0.7597 3.8324 22 6 4.4474 0.9950 -1.1763 23 6 4.3930 2.3599 -0.4871 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.9500 -0.8400 -0.0004 28 1 2.9739 2.9031 2.0115 29 1 4.6632 3.3335 2.4193 30 1 2.4089 2.4789 4.3170 31 1 3.5361 3.8673 4.4756 32 1 5.6281 3.3825 5.6052 33 1 3.6612 4.1946 7.7272 34 1 5.6771 0.4494 3.7978 35 1 4.0031 -0.0822 4.1206 36 1 5.3814 0.4366 -1.1143 37 1 3.8905 0.8779 -2.1060 38 1 3.8004 3.1410 -0.9634 39 1 5.2914 2.6995 0.0285 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326357967.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:33:24 Heat of formation + Delta-G solvation = -113.049863 kcal Electronic energy + Delta-G solvation = -23278.049338 eV Core-core repulsion = 19799.646824 eV Total energy + Delta-G solvation = -3478.402514 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.91119 -40.42030 -39.09628 -37.11791 -36.15716 -35.68369 -34.19784 -31.54328 -30.18383 -28.69005 -27.37438 -25.41969 -23.91218 -23.45572 -22.31385 -21.42347 -20.38563 -19.30299 -18.84215 -17.46864 -17.20468 -17.02964 -16.94401 -16.47516 -16.14402 -15.92016 -15.44946 -15.29560 -14.84548 -14.45258 -13.97328 -13.85824 -13.79170 -13.39231 -13.26487 -13.17643 -13.16691 -12.71354 -12.60596 -12.48139 -12.30581 -12.24711 -12.03430 -11.72811 -11.31489 -11.22491 -10.85755 -10.63517 -10.25478 -10.17697 -9.74094 -8.26452 -6.40788 1.10646 1.42291 1.43703 1.46325 1.51044 1.81336 2.07614 2.38150 2.64733 2.98870 3.29380 3.54917 3.67165 3.78643 3.81123 3.93818 4.19793 4.31355 4.37960 4.52484 4.55544 4.57147 4.59893 4.63644 4.82679 4.85357 4.87732 5.07398 5.10089 5.15633 5.29441 5.39534 5.45274 5.73401 6.03851 6.31462 6.43113 6.62116 6.92524 7.01563 7.29296 7.39459 8.80052 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.021943 B = 0.005122 C = 0.004762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.720305 B = 5465.630869 C = 5878.333665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.722 5.722 3 C 0.560 3.440 4 O -0.557 6.557 5 C -0.211 4.211 6 C 0.564 3.436 7 O -0.568 6.568 8 N -0.602 5.602 9 C 0.109 3.891 10 C -0.126 4.126 11 C 0.238 3.762 12 O -0.591 6.591 13 C -0.563 4.563 14 H 0.054 0.946 15 C 0.037 3.963 16 N -0.907 5.907 17 Si 0.960 3.040 18 H -0.275 1.275 19 H -0.278 1.278 20 H -0.274 1.274 21 C 0.130 3.870 22 C -0.104 4.104 23 C -0.126 4.126 24 H 0.111 0.889 25 H 0.046 0.954 26 H 0.065 0.935 27 H 0.414 0.586 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.051 0.949 31 H 0.078 0.922 32 H 0.381 0.619 33 H 0.272 0.728 34 H 0.052 0.948 35 H 0.064 0.936 36 H 0.115 0.885 37 H 0.132 0.868 38 H 0.122 0.878 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.712 -3.067 -14.577 15.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.372 5.372 3 C 0.345 3.655 4 O -0.436 6.436 5 C -0.217 4.217 6 C 0.352 3.648 7 O -0.448 6.448 8 N -0.333 5.333 9 C -0.013 4.013 10 C -0.165 4.165 11 C 0.198 3.802 12 O -0.400 6.400 13 C -0.602 4.602 14 H 0.073 0.927 15 C -0.165 4.165 16 N -0.546 5.546 17 Si 0.786 3.214 18 H -0.201 1.201 19 H -0.203 1.203 20 H -0.199 1.199 21 C 0.007 3.993 22 C -0.141 4.141 23 C -0.163 4.163 24 H 0.129 0.871 25 H 0.065 0.935 26 H 0.084 0.916 27 H 0.249 0.751 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.070 0.930 31 H 0.097 0.903 32 H 0.232 0.768 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.133 0.867 37 H 0.150 0.850 38 H 0.141 0.859 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.752 -3.266 -14.988 15.792 hybrid contribution -0.357 -0.172 1.749 1.793 sum -4.109 -3.438 -13.240 14.283 Atomic orbital electron populations 1.21758 0.77757 1.04541 1.01885 1.45793 1.08900 1.08471 1.74058 1.19101 0.86954 0.84002 0.75430 1.90687 1.69780 1.32471 1.50657 1.21302 0.92795 1.11664 0.95960 1.19151 0.78313 0.84608 0.82689 1.90656 1.49302 1.19539 1.85315 1.48618 1.63523 1.13487 1.07682 1.22436 0.99864 0.80831 0.98129 1.23099 0.99290 1.01699 0.92426 1.19551 0.81664 0.87641 0.91329 1.86096 1.34382 1.46475 1.73068 1.21692 1.45021 0.94188 0.99251 0.92744 1.25608 0.94294 0.95015 1.01559 1.69700 1.48359 1.02116 1.34427 0.85582 0.78746 0.78006 0.79115 1.20067 1.20296 1.19895 1.21850 0.98753 0.97144 0.81526 1.23225 1.00508 0.98442 0.91927 1.23203 1.00750 0.91686 1.00657 0.87093 0.93537 0.91608 0.75065 0.90337 0.90571 0.92970 0.90300 0.76823 0.91812 0.92992 0.91804 0.86719 0.85019 0.85945 0.87219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.56 10.71 127.77 1.37 2.93 16 2 N -0.72 -16.86 5.71 -484.53 -2.77 -19.63 16 3 C 0.56 16.19 6.75 87.66 0.59 16.78 16 4 O -0.56 -19.02 16.29 -3.02 -0.05 -19.07 16 5 C -0.21 -5.86 1.36 -53.68 -0.07 -5.93 16 6 C 0.56 20.29 6.99 87.65 0.61 20.91 16 7 O -0.57 -22.91 17.33 -3.06 -0.05 -22.96 16 8 N -0.60 -23.80 3.33 -811.79 -2.70 -26.50 16 9 C 0.11 4.13 6.20 86.85 0.54 4.67 16 10 C -0.13 -5.63 5.56 31.99 0.18 -5.45 16 11 C 0.24 11.63 0.85 -10.35 -0.01 11.62 16 12 O -0.59 -29.86 13.06 -148.98 -1.95 -31.81 16 13 C -0.56 -29.79 8.22 25.60 0.21 -29.58 16 14 H 0.05 2.89 7.56 -2.91 -0.02 2.87 16 15 C 0.04 1.88 5.29 84.65 0.45 2.33 16 16 N -0.91 -46.51 10.69 21.45 0.23 -46.28 16 17 Si 0.96 41.28 29.54 68.60 2.03 43.31 16 18 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 19 H -0.28 -11.55 7.11 99.48 0.71 -10.85 16 20 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 21 C 0.13 5.90 6.23 86.73 0.54 6.44 16 22 C -0.10 -2.07 9.86 30.59 0.30 -1.77 16 23 C -0.13 -2.85 9.11 30.59 0.28 -2.57 16 24 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.41 8.54 8.83 -92.71 -0.82 7.72 16 28 H 0.08 2.82 6.99 -2.38 -0.02 2.81 16 29 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 30 H 0.05 2.43 8.04 -2.39 -0.02 2.41 16 31 H 0.08 3.63 7.64 -2.39 -0.02 3.61 16 32 H 0.38 19.35 7.28 -74.06 -0.54 18.81 16 33 H 0.27 13.32 8.31 -92.71 -0.77 12.55 16 34 H 0.05 2.44 8.07 -2.38 -0.02 2.42 16 35 H 0.06 2.96 7.66 -2.39 -0.02 2.94 16 36 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.13 1.96 8.14 -2.38 -0.02 1.94 16 38 H 0.12 2.60 7.91 -2.38 -0.02 2.58 16 39 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -63.39 329.65 -0.55 -63.94 By element: Atomic # 1 Polarization: 38.89 SS G_CDS: -0.28 Total: 38.61 kcal Atomic # 6 Polarization: 15.40 SS G_CDS: 4.99 Total: 20.38 kcal Atomic # 7 Polarization: -87.17 SS G_CDS: -5.24 Total: -92.41 kcal Atomic # 8 Polarization: -71.78 SS G_CDS: -2.05 Total: -73.83 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.31 kcal Total: -63.39 -0.55 -63.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326357967.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.112 kcal (2) G-P(sol) polarization free energy of solvation -63.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds