Wall clock time and date at job start Tue Mar 31 2020 02:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00029 * 2 1 4 4 H 1.48508 * 109.47028 * 269.99600 * 3 2 1 5 5 H 1.48497 * 109.47433 * 29.99979 * 3 2 1 6 6 H 1.48500 * 109.47121 * 150.00271 * 3 2 1 7 7 C 1.37884 * 119.99961 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99860 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99946 * 359.97438 * 7 2 1 10 10 O 1.42903 * 110.88561 * 59.30055 * 9 7 2 11 11 C 1.55149 * 111.00456 * 183.18304 * 9 7 2 12 12 C 1.54327 * 102.94214 * 153.61700 * 11 9 7 13 13 N 1.47014 * 107.27187 * 337.80814 * 12 11 9 14 14 C 1.34784 * 125.64965 * 178.98958 * 13 12 11 15 15 O 1.21353 * 119.99769 * 179.97438 * 14 13 12 16 16 C 1.49442 * 119.99866 * 359.96880 * 14 13 12 17 17 O 1.21345 * 120.00183 * 0.02562 * 16 14 13 18 18 N 1.34774 * 119.99843 * 180.02562 * 16 14 13 19 19 C 1.47022 * 125.65259 * 359.69972 * 18 16 14 20 20 C 1.54311 * 107.28195 * 180.96674 * 19 18 16 21 21 C 1.55164 * 102.86142 * 22.52399 * 20 19 18 22 22 C 1.47434 * 125.64956 * 180.02562 * 18 16 14 23 23 C 1.47419 * 108.70437 * 358.94082 * 13 12 11 24 24 H 0.97001 * 119.99988 * 0.02562 * 1 2 3 25 25 H 0.96700 * 114.00311 * 303.88347 * 10 9 7 26 26 H 1.09002 * 110.72373 * 271.97346 * 11 9 7 27 27 H 1.09000 * 110.72205 * 35.08155 * 11 9 7 28 28 H 1.08999 * 109.88583 * 97.22830 * 12 11 9 29 29 H 1.08998 * 109.88332 * 218.23443 * 12 11 9 30 30 H 1.09001 * 109.87840 * 300.51005 * 19 18 16 31 31 H 1.09001 * 109.88193 * 61.66762 * 19 18 16 32 32 H 1.09003 * 110.92277 * 264.11336 * 20 19 18 33 33 H 1.09002 * 110.59252 * 140.78307 * 20 19 18 34 34 H 1.09000 * 111.00075 * 206.23492 * 21 20 19 35 35 H 1.08993 * 111.03869 * 82.39452 * 21 20 19 36 36 H 1.08996 * 110.36464 * 274.67664 * 22 18 16 37 37 H 1.08996 * 110.36168 * 36.89004 * 22 18 16 38 38 H 1.09009 * 110.36844 * 265.29198 * 23 13 12 39 39 H 1.09002 * 110.37005 * 142.96697 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 0.4055 -2.5993 -1.1483 11 6 2.2254 -3.7039 0.0792 12 6 1.3640 -4.8021 0.7378 13 7 0.2764 -4.1282 1.4618 14 6 -0.7040 -4.7411 2.1546 15 8 -1.5536 -4.0813 2.7164 16 6 -0.7449 -6.2330 2.2306 17 8 0.1049 -6.8927 1.6692 18 7 -1.7255 -6.8459 2.9229 19 6 -2.8096 -6.1718 3.6522 20 6 -3.6735 -7.2700 4.3071 21 6 -2.6988 -8.4747 4.3865 22 6 -1.8849 -8.3031 3.0798 23 6 0.4363 -2.6710 1.3058 24 1 -0.4850 0.8401 -0.0004 25 1 -0.2208 -1.8683 -1.2404 26 1 2.5435 -4.0093 -0.9176 27 1 3.0876 -3.4620 0.7006 28 1 0.9492 -5.4571 -0.0284 29 1 1.9710 -5.3826 1.4325 30 1 -2.3911 -5.5202 4.4193 31 1 -3.4166 -5.5895 2.9590 32 1 -4.5347 -7.5112 3.6839 33 1 -3.9909 -6.9645 5.3041 34 1 -3.2437 -9.4188 4.3863 35 1 -2.0532 -8.3988 5.2613 36 1 -2.4334 -8.7179 2.2342 37 1 -0.9109 -8.7835 3.1718 38 1 0.9845 -2.2567 2.1520 39 1 -0.5375 -2.1904 1.2116 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327020547.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:06:50 Heat of formation + Delta-G solvation = -107.417214 kcal Electronic energy + Delta-G solvation = -23005.392690 eV Core-core repulsion = 19527.234425 eV Total energy + Delta-G solvation = -3478.158264 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.46398 -38.79939 -37.29728 -37.14016 -34.27756 -32.21118 -31.68116 -30.20475 -29.19194 -27.90413 -26.04061 -24.52085 -22.75521 -21.60336 -20.92259 -19.65348 -18.82942 -17.26584 -16.93155 -16.73909 -16.38279 -15.37844 -15.15235 -14.93198 -14.48757 -14.12422 -13.68111 -13.44567 -13.15237 -13.05469 -12.91810 -12.80912 -12.38845 -12.20979 -11.65582 -11.60542 -11.50122 -11.42061 -11.06028 -10.95451 -10.91102 -10.71823 -10.54522 -10.48316 -10.20266 -9.37861 -9.06703 -8.75503 -8.69726 -8.41380 -7.85892 -6.31422 -4.41227 1.83812 2.56707 3.19609 3.27231 3.29828 3.62505 3.78026 4.24017 4.35088 4.45592 4.71794 4.73532 4.96433 5.15581 5.19205 5.49395 5.50885 5.53431 5.65252 5.79062 5.81371 5.85504 5.87394 5.99311 6.07398 6.20159 6.33753 6.52699 6.74476 6.81703 6.86024 7.19530 7.28671 7.31970 7.71430 7.81369 7.98294 8.07469 8.49342 8.63247 9.28397 9.40111 10.75703 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.033925 B = 0.004226 C = 0.003930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.151981 B = 6623.424261 C = 7122.229684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.071 3.929 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.538 4.538 8 H 0.069 0.931 9 C 0.248 3.752 10 O -0.582 6.582 11 C -0.122 4.122 12 C 0.112 3.888 13 N -0.574 5.574 14 C 0.510 3.490 15 O -0.534 6.534 16 C 0.523 3.477 17 O -0.520 6.520 18 N -0.599 5.599 19 C 0.108 3.892 20 C -0.136 4.136 21 C -0.134 4.134 22 C 0.104 3.896 23 C 0.093 3.907 24 H 0.271 0.729 25 H 0.384 0.616 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.889 -13.040 7.456 15.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.133 4.133 3 Si 0.732 3.268 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.576 4.576 8 H 0.087 0.913 9 C 0.208 3.792 10 O -0.391 6.391 11 C -0.160 4.160 12 C -0.011 4.011 13 N -0.306 5.306 14 C 0.292 3.708 15 O -0.413 6.413 16 C 0.307 3.693 17 O -0.395 6.395 18 N -0.335 5.335 19 C -0.015 4.015 20 C -0.174 4.174 21 C -0.172 4.172 22 C -0.018 4.018 23 C -0.028 4.028 24 H 0.081 0.919 25 H 0.235 0.765 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.085 0.915 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.672 -13.449 7.341 16.019 hybrid contribution 0.026 1.422 0.153 1.431 sum -4.646 -12.027 7.494 14.913 Atomic orbital electron populations 1.69647 1.06024 1.28024 1.49677 1.25097 0.95057 0.99834 0.93276 0.86376 0.79769 0.82271 0.78347 1.20346 1.20991 1.19652 1.21494 0.93790 0.89931 1.52374 0.91318 1.19620 0.86143 0.91936 0.81531 1.86103 1.53893 1.52023 1.47126 1.22714 0.97736 0.95015 1.00499 1.22121 0.88165 0.95301 0.95491 1.48619 1.24899 1.10198 1.46919 1.19459 0.82561 0.87474 0.81294 1.90705 1.38147 1.66225 1.46199 1.20154 0.80875 0.89187 0.79081 1.90722 1.37603 1.66831 1.44362 1.48266 1.27112 1.07518 1.50571 1.22157 0.88083 0.94774 0.96458 1.22739 0.97945 0.95005 1.01666 1.22791 0.98064 0.98938 0.97375 1.22298 1.01046 0.80801 0.97650 1.23470 1.03086 0.75492 1.00741 0.91885 0.76527 0.90529 0.90380 0.91241 0.91816 0.90321 0.90343 0.90501 0.89866 0.89702 0.90496 0.91121 0.90150 0.91506 0.89345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.56 10.68 55.43 0.59 -22.97 16 2 C 0.07 1.81 5.27 -17.82 -0.09 1.72 16 3 Si 0.91 20.11 29.54 -169.99 -5.02 15.09 16 4 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 7 C -0.54 -13.90 8.26 -34.44 -0.28 -14.18 16 8 H 0.07 1.74 7.78 -52.49 -0.41 1.33 16 9 C 0.25 6.07 0.89 -89.63 -0.08 5.99 16 10 O -0.58 -15.04 13.19 -35.23 -0.46 -15.51 16 11 C -0.12 -2.53 6.13 -24.90 -0.15 -2.68 16 12 C 0.11 2.24 5.49 -3.07 -0.02 2.22 16 13 N -0.57 -12.54 3.33 -171.03 -0.57 -13.11 16 14 C 0.51 10.65 7.88 -11.59 -0.09 10.56 16 15 O -0.53 -11.76 14.38 5.49 0.08 -11.68 16 16 C 0.52 9.58 7.88 -11.59 -0.09 9.49 16 17 O -0.52 -10.12 14.38 5.50 0.08 -10.04 16 18 N -0.60 -8.79 3.33 -171.05 -0.57 -9.35 16 19 C 0.11 1.37 5.48 -3.07 -0.02 1.35 16 20 C -0.14 -1.13 6.95 -24.90 -0.17 -1.31 16 21 C -0.13 -1.04 7.08 -24.59 -0.17 -1.21 16 22 C 0.10 1.14 6.91 -2.53 -0.02 1.12 16 23 C 0.09 2.23 5.51 -2.53 -0.01 2.22 16 24 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 25 H 0.38 10.13 7.18 45.56 0.33 10.46 16 26 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 27 H 0.08 1.51 8.02 -51.93 -0.42 1.09 16 28 H 0.07 1.41 7.58 -51.93 -0.39 1.02 16 29 H 0.06 1.18 7.69 -51.93 -0.40 0.78 16 30 H 0.08 1.07 7.59 -51.93 -0.39 0.68 16 31 H 0.08 1.09 7.68 -51.93 -0.40 0.69 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.08 0.90 8.03 -51.93 -0.42 0.48 16 38 H 0.07 1.62 8.03 -51.92 -0.42 1.21 16 39 H 0.09 2.35 7.48 -51.93 -0.39 1.96 16 LS Contribution 318.10 15.07 4.79 4.79 Total: -1.00 -29.36 318.10 -7.26 -36.62 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -4.98 Total: 10.86 kcal Atomic # 6 Polarization: 16.50 SS G_CDS: -1.21 Total: 15.30 kcal Atomic # 7 Polarization: -44.88 SS G_CDS: -0.55 Total: -45.43 kcal Atomic # 8 Polarization: -36.93 SS G_CDS: -0.31 Total: -37.23 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.36 -7.26 -36.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327020547.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.798 kcal (2) G-P(sol) polarization free energy of solvation -29.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds