Wall clock time and date at job start Tue Mar 31 2020 02:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86797 * 120.00481 * 2 1 4 4 H 1.48499 * 109.47124 * 270.00348 * 3 2 1 5 5 H 1.48494 * 109.47057 * 30.00377 * 3 2 1 6 6 H 1.48497 * 109.47041 * 150.00442 * 3 2 1 7 7 C 1.38958 * 119.99779 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00196 * 180.02562 * 7 2 1 9 9 N 1.37094 * 119.99688 * 359.97438 * 7 2 1 10 10 C 1.34775 * 119.99952 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99960 * 359.97438 * 10 9 7 12 12 C 1.50707 * 119.99952 * 180.02562 * 10 9 7 13 13 N 1.46507 * 109.46857 * 179.97438 * 12 10 9 14 14 C 1.34778 * 119.99741 * 179.97438 * 13 12 10 15 15 O 1.21273 * 119.99854 * 359.72655 * 14 13 12 16 16 C 1.50695 * 119.99588 * 179.97438 * 14 13 12 17 17 H 1.08995 * 115.55759 * 59.90758 * 16 14 13 18 18 C 1.53062 * 117.50545 * 205.61095 * 16 14 13 19 19 C 1.52736 * 117.50871 * 274.19309 * 16 14 13 20 20 C 1.53245 * 117.83095 * 144.67194 * 19 16 14 21 21 C 1.53329 * 108.48044 * 265.33659 * 20 19 16 22 22 O 1.42881 * 109.31761 * 306.01803 * 21 20 19 23 23 C 1.42868 * 114.52092 * 64.36881 * 22 21 20 24 24 C 1.53251 * 117.82807 * 0.40457 * 19 16 14 25 25 H 0.97002 * 119.99598 * 359.97438 * 1 2 3 26 26 H 0.97001 * 120.00342 * 0.02562 * 9 7 2 27 27 H 1.09000 * 109.46868 * 59.99997 * 12 10 9 28 28 H 1.08994 * 109.46887 * 299.99578 * 12 10 9 29 29 H 0.96993 * 120.00026 * 359.97438 * 13 12 10 30 30 H 1.08997 * 117.50287 * 214.94154 * 18 16 14 31 31 H 1.08997 * 117.50405 * 359.97438 * 18 16 14 32 32 H 1.09000 * 109.63628 * 25.03651 * 20 19 16 33 33 H 1.08994 * 109.63249 * 145.64063 * 20 19 16 34 34 H 1.09000 * 109.49789 * 186.06437 * 21 20 19 35 35 H 1.09002 * 109.49927 * 65.97126 * 21 20 19 36 36 H 1.08997 * 109.49399 * 175.67972 * 23 22 21 37 37 H 1.08997 * 109.49518 * 55.58214 * 23 22 21 38 38 H 1.09004 * 109.63076 * 214.36587 * 24 19 16 39 39 H 1.09002 * 109.63422 * 334.96196 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4458 2.6526 0.7001 6 1 3.5458 1.4399 0.6999 7 6 2.0089 -1.2034 -0.0005 8 1 3.0888 -1.2035 -0.0001 9 7 1.3233 -2.3907 -0.0005 10 6 1.9970 -3.5579 -0.0005 11 8 3.2100 -3.5580 -0.0010 12 6 1.2434 -4.8630 -0.0011 13 7 2.1954 -5.9766 -0.0016 14 6 1.7460 -7.2473 -0.0017 15 8 0.5537 -7.4687 0.0037 16 6 2.7253 -8.3927 -0.0028 17 1 3.4062 -8.4300 0.8475 18 6 2.2536 -9.7253 -0.5896 19 6 3.2579 -8.8641 -1.3544 20 6 4.7108 -9.3469 -1.4219 21 6 5.5937 -8.1718 -1.8584 22 8 5.0839 -7.6242 -3.0757 23 6 3.7835 -7.0428 -2.9655 24 6 2.7679 -8.1352 -2.6102 25 1 -0.4850 0.8401 0.0004 26 1 0.3533 -2.3906 -0.0005 27 1 0.6171 -4.9204 -0.8914 28 1 0.6165 -4.9209 0.8886 29 1 3.1490 -5.7994 -0.0019 30 1 2.6248 -10.6391 -0.1257 31 1 1.2350 -9.7735 -0.9745 32 1 5.0265 -9.6970 -0.4391 33 1 4.7943 -10.1567 -2.1466 34 1 6.6137 -8.5220 -2.0161 35 1 5.5876 -7.4048 -1.0839 36 1 3.5081 -6.5851 -3.9156 37 1 3.7896 -6.2835 -2.1836 38 1 2.6865 -8.8423 -3.4357 39 1 1.7959 -7.6822 -2.4149 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328650394.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:16:49 Heat of formation + Delta-G solvation = -105.327500 kcal Electronic energy + Delta-G solvation = -22469.990359 eV Core-core repulsion = 18991.922712 eV Total energy + Delta-G solvation = -3478.067647 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.61486 -38.95361 -38.11432 -36.39958 -34.48234 -33.69168 -31.43185 -31.37566 -30.31539 -28.05683 -25.02493 -23.90886 -23.64103 -22.74149 -20.34920 -19.63627 -18.95678 -18.10200 -17.19921 -16.38380 -16.12945 -15.75637 -15.48673 -15.21091 -15.03007 -14.69116 -14.36389 -14.13213 -13.73061 -13.44046 -13.34226 -13.14386 -12.58107 -12.25897 -12.14127 -11.94608 -11.66130 -11.49751 -11.23956 -11.14586 -10.88597 -10.50020 -10.47995 -10.34907 -10.20398 -9.73698 -9.66396 -9.35339 -8.84605 -8.66954 -8.13232 -6.54278 -3.96366 2.64054 3.09844 3.18112 3.21670 3.27740 3.55685 3.70551 3.79375 4.08786 4.36300 4.47928 4.61554 4.65962 4.83461 4.85951 5.04791 5.11920 5.14322 5.30824 5.37017 5.44547 5.51172 5.57435 5.62083 5.71195 5.82647 5.89568 5.91080 5.91696 5.99955 6.02776 6.05047 6.62416 7.13741 7.43444 7.75484 7.88885 8.38134 8.42993 9.01708 9.35935 9.83570 10.62545 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.024583 B = 0.003877 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.738783 B = 7220.819012 C = 7924.135167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.026 3.974 3 Si 0.933 3.067 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.306 4.306 8 H 0.106 0.894 9 N -0.548 5.548 10 C 0.427 3.573 11 O -0.597 6.597 12 C 0.108 3.892 13 N -0.702 5.702 14 C 0.542 3.458 15 O -0.547 6.547 16 C -0.179 4.179 17 H 0.128 0.872 18 C -0.135 4.135 19 C -0.106 4.106 20 C -0.116 4.116 21 C 0.060 3.940 22 O -0.382 6.382 23 C 0.061 3.939 24 C -0.121 4.121 25 H 0.274 0.726 26 H 0.396 0.604 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.410 0.590 30 H 0.103 0.897 31 H 0.106 0.894 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.055 0.945 36 H 0.096 0.904 37 H 0.060 0.940 38 H 0.079 0.921 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.773 -16.750 -2.550 17.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.435 4.435 8 H 0.123 0.877 9 N -0.183 5.183 10 C 0.213 3.787 11 O -0.483 6.483 12 C -0.020 4.020 13 N -0.356 5.356 14 C 0.328 3.672 15 O -0.425 6.425 16 C -0.200 4.200 17 H 0.146 0.854 18 C -0.173 4.173 19 C -0.107 4.107 20 C -0.154 4.154 21 C -0.017 4.017 22 O -0.301 6.301 23 C -0.016 4.016 24 C -0.159 4.159 25 H 0.084 0.916 26 H 0.229 0.771 27 H 0.101 0.899 28 H 0.102 0.898 29 H 0.248 0.752 30 H 0.121 0.879 31 H 0.124 0.876 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.112 0.888 35 H 0.073 0.927 36 H 0.114 0.886 37 H 0.078 0.922 38 H 0.098 0.902 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.680 -16.683 -2.709 17.831 hybrid contribution -0.062 1.004 0.458 1.105 sum 5.618 -15.679 -2.251 16.807 Atomic orbital electron populations 1.69615 1.06034 1.28568 1.49218 1.25329 0.95658 0.99952 0.96717 0.85811 0.79237 0.80460 0.78528 1.20224 1.20784 1.19299 1.19731 0.93464 0.81977 1.48317 0.87657 1.41797 1.09478 1.04488 1.62506 1.19721 0.88298 0.84957 0.85754 1.90500 1.13654 1.86791 1.57401 1.20977 0.91918 0.85877 1.03229 1.45706 1.11555 1.04499 1.73819 1.19532 0.88587 0.83142 0.75963 1.90686 1.16573 1.84887 1.50398 1.22400 1.02653 0.95797 0.99190 0.85432 1.23031 0.99957 0.92780 1.01500 1.21526 0.95404 1.02301 0.91421 1.21851 0.92090 0.99006 1.02426 1.22611 0.97049 0.94589 0.87419 1.87860 1.32685 1.76917 1.32602 1.22646 0.82048 0.94167 1.02715 1.21868 0.99511 0.98475 0.96023 0.91559 0.77051 0.89896 0.89836 0.75159 0.87894 0.87560 0.90517 0.90233 0.88812 0.92713 0.88628 0.92205 0.90246 0.90464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.69 13.05 55.50 0.72 -22.97 16 2 C 0.03 0.69 5.50 -17.46 -0.10 0.59 16 3 Si 0.93 20.38 29.55 -169.99 -5.02 15.36 16 4 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 7 C -0.31 -8.21 9.68 -14.93 -0.14 -8.36 16 8 H 0.11 2.95 7.16 -52.49 -0.38 2.58 16 9 N -0.55 -13.41 5.29 -10.96 -0.06 -13.47 16 10 C 0.43 9.60 7.85 -10.98 -0.09 9.52 16 11 O -0.60 -14.95 15.24 5.55 0.08 -14.86 16 12 C 0.11 1.95 6.15 -5.19 -0.03 1.91 16 13 N -0.70 -11.39 5.41 -61.47 -0.33 -11.72 16 14 C 0.54 8.35 5.84 -10.99 -0.06 8.29 16 15 O -0.55 -10.12 16.57 5.56 0.09 -10.02 16 16 C -0.18 -2.09 5.87 -91.88 -0.54 -2.63 16 17 H 0.13 1.27 8.14 -51.93 -0.42 0.84 16 18 C -0.14 -1.38 9.52 -26.80 -0.26 -1.63 16 19 C -0.11 -1.10 2.03 -154.49 -0.31 -1.42 16 20 C -0.12 -1.00 5.92 -26.43 -0.16 -1.16 16 21 C 0.06 0.60 6.85 37.33 0.26 0.85 16 22 O -0.38 -4.85 10.69 -35.23 -0.38 -5.23 16 23 C 0.06 0.76 6.85 37.33 0.26 1.02 16 24 C -0.12 -1.40 5.59 -26.43 -0.15 -1.54 16 25 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 26 H 0.40 9.33 7.90 -40.82 -0.32 9.01 16 27 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 28 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 29 H 0.41 6.64 7.16 -40.82 -0.29 6.35 16 30 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.11 1.22 7.90 -51.93 -0.41 0.81 16 32 H 0.08 0.54 8.08 -51.93 -0.42 0.12 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.06 0.84 7.74 -51.93 -0.40 0.43 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.08 1.01 6.83 -51.93 -0.35 0.66 16 LS Contribution 329.12 15.07 4.96 4.96 Total: -1.00 -30.83 329.12 -6.77 -37.60 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: -5.52 Total: 14.91 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: -1.32 Total: 5.44 kcal Atomic # 7 Polarization: -48.49 SS G_CDS: 0.33 Total: -48.15 kcal Atomic # 8 Polarization: -29.91 SS G_CDS: -0.20 Total: -30.11 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.83 -6.77 -37.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328650394.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.729 kcal (2) G-P(sol) polarization free energy of solvation -30.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds