Wall clock time and date at job start Tue Mar 31 2020 02:04:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31508 * 1
3 3 Si 1.86796 * 120.00318 * 2 1
4 4 H 1.48499 * 109.47297 * 180.02562 * 3 2 1
5 5 H 1.48505 * 109.47128 * 299.99975 * 3 2 1
6 6 H 1.48496 * 109.47312 * 60.00474 * 3 2 1
7 7 C 1.37876 * 119.99733 * 180.02562 * 2 1 3
8 8 H 1.08006 * 120.00095 * 179.97438 * 7 2 1
9 9 C 1.50699 * 120.00306 * 359.97438 * 7 2 1
10 10 O 1.42909 * 110.63737 * 298.31352 * 9 7 2
11 11 C 1.55157 * 110.72010 * 61.45159 * 9 7 2
12 12 C 1.54910 * 101.57983 * 154.04716 * 11 9 7
13 13 N 1.47419 * 104.83370 * 322.99136 * 12 11 9
14 14 C 1.34781 * 125.64826 * 204.09617 * 13 12 11
15 15 O 1.21283 * 119.99891 * 174.96696 * 14 13 12
16 16 C 1.50703 * 119.99816 * 355.23939 * 14 13 12
17 17 H 1.08992 * 109.39982 * 25.26090 * 16 14 13
18 18 C 1.53065 * 109.39675 * 145.09171 * 16 14 13
19 19 C 1.53357 * 108.42153 * 169.02744 * 18 16 14
20 20 C 1.52920 * 108.67018 * 292.46739 * 19 18 16
21 21 N 1.45757 * 110.48923 * 50.75918 * 20 19 18
22 22 C 1.33350 * 124.10352 * 340.91341 * 21 20 19
23 23 O 1.21284 * 118.24183 * 182.22529 * 22 21 20
24 24 C 1.47020 * 108.70278 * 24.35699 * 13 12 11
25 25 H 0.97006 * 119.99554 * 359.97438 * 1 2 3
26 26 H 0.96695 * 113.99976 * 61.69059 * 10 9 7
27 27 H 1.08996 * 111.00568 * 35.97108 * 11 9 7
28 28 H 1.09000 * 111.03717 * 272.13457 * 11 9 7
29 29 H 1.09002 * 110.36731 * 204.14812 * 12 11 9
30 30 H 1.09000 * 110.45744 * 81.87971 * 12 11 9
31 31 H 1.08994 * 109.67710 * 288.75771 * 18 16 14
32 32 H 1.09000 * 109.67808 * 49.30219 * 18 16 14
33 33 H 1.08995 * 109.59993 * 52.22528 * 19 18 16
34 34 H 1.08992 * 109.60113 * 172.71536 * 19 18 16
35 35 H 1.09005 * 109.29490 * 171.06321 * 20 19 18
36 36 H 1.08998 * 109.30643 * 290.64428 * 20 19 18
37 37 H 0.97001 * 117.94721 * 160.92453 * 21 20 19
38 38 H 1.08996 * 109.88513 * 118.13261 * 24 13 12
39 39 H 1.09001 * 109.88069 * 239.29846 * 24 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.7091 1.3463 -0.0006
5 1 1.8904 2.3964 -1.2125
6 1 1.8906 2.3963 1.2125
7 6 2.0044 -1.1941 -0.0005
8 1 3.0845 -1.1941 -0.0010
9 6 1.2509 -2.4992 -0.0005
10 8 0.4502 -2.6185 1.1771
11 6 0.3753 -2.6275 -1.2750
12 6 0.2668 -4.1656 -1.4241
13 7 1.5867 -4.6786 -1.0142
14 6 2.1236 -5.8559 -1.3915
15 8 3.2577 -6.1371 -1.0662
16 6 1.3170 -6.8200 -2.2227
17 1 0.5616 -6.2701 -2.7839
18 6 2.2442 -7.5495 -3.1980
19 6 1.4651 -8.7078 -3.8329
20 6 1.1698 -9.7493 -2.7528
21 7 0.5679 -9.1173 -1.5855
22 6 0.6416 -7.8124 -1.3204
23 8 0.1359 -7.4055 -0.2959
24 6 2.2176 -3.6962 -0.1208
25 1 -0.4850 0.8401 0.0004
26 1 -0.2278 -1.9344 1.2627
27 1 0.8738 -2.1856 -2.1376
28 1 -0.6065 -2.1796 -1.1219
29 1 0.0611 -4.4327 -2.4607
30 1 -0.5123 -4.5577 -0.7704
31 1 2.5750 -6.8604 -3.9749
32 1 3.1084 -7.9398 -2.6604
33 1 0.5284 -8.3348 -4.2471
34 1 2.0629 -9.1605 -4.6238
35 1 0.4840 -10.4970 -3.1514
36 1 2.0996 -10.2349 -2.4567
37 1 0.0836 -9.6811 -0.9623
38 1 2.3843 -4.1406 0.8603
39 1 3.1650 -3.3639 -0.5453
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001332153528.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:04:13
Heat of formation + Delta-G solvation = -122.905778 kcal
Electronic energy + Delta-G solvation = -23189.310843 eV
Core-core repulsion = 19710.480944 eV
Total energy + Delta-G solvation = -3478.829899 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 282.141 amu
Computer time = 0.53 seconds
Orbital eigenvalues (eV)
-40.81026 -38.95645 -37.23433 -36.51794 -34.28102 -33.13819 -32.18291 -30.34262
-29.39988 -28.25021 -25.69872 -24.44721 -22.93521 -22.30325 -20.20672 -19.35095
-18.53686 -17.50134 -17.22122 -16.76361 -16.48989 -15.44758 -15.04630 -14.89371
-14.58262 -14.29387 -14.15322 -13.94926 -13.61453 -13.40231 -12.95737 -12.39055
-12.05158 -11.98270 -11.68344 -11.53871 -11.41590 -11.38424 -11.29762 -11.11180
-10.86283 -10.58548 -10.43207 -10.07455 -9.82002 -9.48259 -9.28426 -9.22243
-8.65102 -8.17346 -7.95684 -6.26219 -4.33665 2.47596 2.80912 3.20518
3.29481 3.32578 3.34602 3.56927 4.28869 4.41409 4.50092 4.50709
4.56184 4.95142 5.03051 5.09682 5.11067 5.31978 5.48894 5.54956
5.59215 5.72441 5.79085 5.97284 6.04520 6.11779 6.27793 6.51626
6.63988 6.72633 6.95180 6.99764 7.13495 7.32529 7.38654 7.75779
8.05422 8.11417 8.13193 8.57574 8.69456 9.34016 9.44435 10.81383
Molecular weight = 282.14amu
Principal moments of inertia in cm(-1)
A = 0.036670 B = 0.004254 C = 0.004123
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 763.375321 B = 6579.947700 C = 6790.078224
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.896 5.896
2 C 0.072 3.928
3 Si 0.903 3.097
4 H -0.271 1.271
5 H -0.283 1.283
6 H -0.282 1.282
7 C -0.533 4.533
8 H 0.065 0.935
9 C 0.247 3.753
10 O -0.583 6.583
11 C -0.134 4.134
12 C 0.094 3.906
13 N -0.594 5.594
14 C 0.543 3.457
15 O -0.551 6.551
16 C -0.123 4.123
17 H 0.121 0.879
18 C -0.111 4.111
19 C -0.136 4.136
20 C 0.109 3.891
21 N -0.720 5.720
22 C 0.533 3.467
23 O -0.533 6.533
24 C 0.123 3.877
25 H 0.267 0.733
26 H 0.381 0.619
27 H 0.067 0.933
28 H 0.089 0.911
29 H 0.056 0.944
30 H 0.069 0.931
31 H 0.081 0.919
32 H 0.087 0.913
33 H 0.074 0.926
34 H 0.089 0.911
35 H 0.077 0.923
36 H 0.067 0.933
37 H 0.401 0.599
38 H 0.061 0.939
39 H 0.073 0.927
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.317 -15.449 -10.201 18.560
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.535 5.535
2 C -0.130 4.130
3 Si 0.730 3.270
4 H -0.196 1.196
5 H -0.209 1.209
6 H -0.208 1.208
7 C -0.572 4.572
8 H 0.083 0.917
9 C 0.207 3.793
10 O -0.392 6.392
11 C -0.173 4.173
12 C -0.028 4.028
13 N -0.324 5.324
14 C 0.329 3.671
15 O -0.431 6.431
16 C -0.148 4.148
17 H 0.138 0.862
18 C -0.149 4.149
19 C -0.174 4.174
20 C -0.015 4.015
21 N -0.374 5.374
22 C 0.319 3.681
23 O -0.409 6.409
24 C 0.002 3.998
25 H 0.077 0.923
26 H 0.231 0.769
27 H 0.085 0.915
28 H 0.107 0.893
29 H 0.075 0.925
30 H 0.087 0.913
31 H 0.100 0.900
32 H 0.106 0.894
33 H 0.092 0.908
34 H 0.107 0.893
35 H 0.096 0.904
36 H 0.085 0.915
37 H 0.237 0.763
38 H 0.080 0.920
39 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges -0.592 -15.678 -9.561 18.373
hybrid contribution -0.282 1.137 -0.040 1.172
sum -0.873 -14.540 -9.601 17.446
Atomic orbital electron populations
1.69713 1.05948 1.27480 1.50363 1.24981 0.95021 0.99493 0.93527
0.86363 0.80197 0.82750 0.77672 1.19591 1.20865 1.20768 1.21557
0.93731 0.90180 1.51708 0.91701 1.19474 0.86977 0.90542 0.82313
1.86170 1.51777 1.56413 1.44829 1.23300 1.02936 0.90067 1.00953
1.22566 0.84722 0.97418 0.98100 1.48493 1.19330 1.17648 1.46960
1.19215 0.86335 0.81016 0.80508 1.90655 1.18630 1.76159 1.57609
1.21388 0.99899 0.96162 0.97312 0.86157 1.21601 0.98204 0.97182
0.97919 1.21902 1.01525 0.96176 0.97779 1.21420 0.98609 0.95528
0.85959 1.45370 1.56943 1.08054 1.27032 1.19486 0.79518 0.82873
0.86267 1.90849 1.46537 1.77535 1.25942 1.22092 0.96695 0.88467
0.92589 0.92298 0.76874 0.91466 0.89273 0.92517 0.91298 0.90035
0.89411 0.90754 0.89252 0.90439 0.91469 0.76334 0.92018 0.90869
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -23.21 10.67 55.43 0.59 -22.61 16
2 C 0.07 1.87 5.28 -17.82 -0.09 1.78 16
3 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16
4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16
5 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16
6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16
7 C -0.53 -14.19 8.23 -34.44 -0.28 -14.48 16
8 H 0.06 1.73 7.59 -52.48 -0.40 1.34 16
9 C 0.25 6.16 0.84 -89.93 -0.08 6.09 16
10 O -0.58 -15.31 13.06 -35.23 -0.46 -15.77 16
11 C -0.13 -2.96 5.47 -24.58 -0.13 -3.10 16
12 C 0.09 1.83 6.55 -2.53 -0.02 1.82 16
13 N -0.59 -12.58 3.33 -170.52 -0.57 -13.14 16
14 C 0.54 10.78 6.37 -10.98 -0.07 10.71 16
15 O -0.55 -12.39 16.38 5.56 0.09 -12.30 16
16 C -0.12 -1.80 2.46 -93.14 -0.23 -2.03 16
17 H 0.12 1.55 6.36 -51.93 -0.33 1.22 16
18 C -0.11 -1.21 5.16 -26.51 -0.14 -1.35 16
19 C -0.14 -0.95 6.02 -26.59 -0.16 -1.11 16
20 C 0.11 0.75 7.17 -4.48 -0.03 0.72 16
21 N -0.72 -7.70 5.45 -61.39 -0.33 -8.04 16
22 C 0.53 8.18 7.28 -11.87 -0.09 8.09 16
23 O -0.53 -10.64 17.20 5.55 0.10 -10.54 16
24 C 0.12 2.93 6.23 -3.06 -0.02 2.91 16
25 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16
26 H 0.38 9.89 7.46 45.56 0.34 10.23 16
27 H 0.07 1.50 8.04 -51.93 -0.42 1.08 16
28 H 0.09 2.04 7.53 -51.93 -0.39 1.65 16
29 H 0.06 0.89 6.85 -51.93 -0.36 0.54 16
30 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16
31 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16
32 H 0.09 1.10 7.46 -51.93 -0.39 0.71 16
33 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16
34 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16
35 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16
36 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16
37 H 0.40 3.77 8.80 -40.82 -0.36 3.41 16
38 H 0.06 1.55 8.07 -51.93 -0.42 1.13 16
39 H 0.07 1.74 7.67 -51.93 -0.40 1.34 16
LS Contribution 316.98 15.07 4.78 4.78
Total: -1.00 -32.62 316.98 -6.95 -39.58
By element:
Atomic # 1 Polarization: 17.40 SS G_CDS: -4.79 Total: 12.62 kcal
Atomic # 6 Polarization: 11.39 SS G_CDS: -1.34 Total: 10.05 kcal
Atomic # 7 Polarization: -43.49 SS G_CDS: -0.31 Total: -43.80 kcal
Atomic # 8 Polarization: -38.34 SS G_CDS: -0.27 Total: -38.62 kcal
Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal
Total LS contribution 4.78 Total: 4.78 kcal
Total: -32.62 -6.95 -39.58 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001332153528.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -83.330 kcal
(2) G-P(sol) polarization free energy of solvation -32.623 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.953 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.953 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.576 kcal
(6) G-S(sol) free energy of system = (1) + (5) -122.906 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.54 seconds