Wall clock time and date at job start Tue Mar 31 2020 02:04:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31508 * 1
3 3 Si 1.86796 * 120.00318 * 2 1
4 4 H 1.48499 * 109.47297 * 180.02562 * 3 2 1
5 5 H 1.48505 * 109.47128 * 299.99975 * 3 2 1
6 6 H 1.48496 * 109.47312 * 60.00474 * 3 2 1
7 7 C 1.37876 * 119.99733 * 180.02562 * 2 1 3
8 8 H 1.08006 * 120.00095 * 179.97438 * 7 2 1
9 9 C 1.50699 * 120.00306 * 359.97438 * 7 2 1
10 10 O 1.42909 * 110.63737 * 298.31352 * 9 7 2
11 11 C 1.55157 * 110.72010 * 61.45159 * 9 7 2
12 12 C 1.54910 * 101.57983 * 154.04716 * 11 9 7
13 13 N 1.47419 * 104.83370 * 322.99136 * 12 11 9
14 14 C 1.34781 * 125.64826 * 204.09617 * 13 12 11
15 15 O 1.21283 * 119.99891 * 174.96696 * 14 13 12
16 16 C 1.50703 * 119.99816 * 355.23939 * 14 13 12
17 17 H 1.08992 * 109.39982 * 25.26090 * 16 14 13
18 18 C 1.53065 * 109.39675 * 145.09171 * 16 14 13
19 19 C 1.53357 * 108.42153 * 169.02744 * 18 16 14
20 20 C 1.52920 * 108.67018 * 292.46739 * 19 18 16
21 21 N 1.45757 * 110.48923 * 50.75918 * 20 19 18
22 22 C 1.33350 * 124.10352 * 340.91341 * 21 20 19
23 23 O 1.21284 * 118.24183 * 182.22529 * 22 21 20
24 24 C 1.47020 * 108.70278 * 24.35699 * 13 12 11
25 25 H 0.97006 * 119.99554 * 359.97438 * 1 2 3
26 26 H 0.96695 * 113.99976 * 61.69059 * 10 9 7
27 27 H 1.08996 * 111.00568 * 35.97108 * 11 9 7
28 28 H 1.09000 * 111.03717 * 272.13457 * 11 9 7
29 29 H 1.09002 * 110.36731 * 204.14812 * 12 11 9
30 30 H 1.09000 * 110.45744 * 81.87971 * 12 11 9
31 31 H 1.08994 * 109.67710 * 288.75771 * 18 16 14
32 32 H 1.09000 * 109.67808 * 49.30219 * 18 16 14
33 33 H 1.08995 * 109.59993 * 52.22528 * 19 18 16
34 34 H 1.08992 * 109.60113 * 172.71536 * 19 18 16
35 35 H 1.09005 * 109.29490 * 171.06321 * 20 19 18
36 36 H 1.08998 * 109.30643 * 290.64428 * 20 19 18
37 37 H 0.97001 * 117.94721 * 160.92453 * 21 20 19
38 38 H 1.08996 * 109.88513 * 118.13261 * 24 13 12
39 39 H 1.09001 * 109.88069 * 239.29846 * 24 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.7091 1.3463 -0.0006
5 1 1.8904 2.3964 -1.2125
6 1 1.8906 2.3963 1.2125
7 6 2.0044 -1.1941 -0.0005
8 1 3.0845 -1.1941 -0.0010
9 6 1.2509 -2.4992 -0.0005
10 8 0.4502 -2.6185 1.1771
11 6 0.3753 -2.6275 -1.2750
12 6 0.2668 -4.1656 -1.4241
13 7 1.5867 -4.6786 -1.0142
14 6 2.1236 -5.8559 -1.3915
15 8 3.2577 -6.1371 -1.0662
16 6 1.3170 -6.8200 -2.2227
17 1 0.5616 -6.2701 -2.7839
18 6 2.2442 -7.5495 -3.1980
19 6 1.4651 -8.7078 -3.8329
20 6 1.1698 -9.7493 -2.7528
21 7 0.5679 -9.1173 -1.5855
22 6 0.6416 -7.8124 -1.3204
23 8 0.1359 -7.4055 -0.2959
24 6 2.2176 -3.6962 -0.1208
25 1 -0.4850 0.8401 0.0004
26 1 -0.2278 -1.9344 1.2627
27 1 0.8738 -2.1856 -2.1376
28 1 -0.6065 -2.1796 -1.1219
29 1 0.0611 -4.4327 -2.4607
30 1 -0.5123 -4.5577 -0.7704
31 1 2.5750 -6.8604 -3.9749
32 1 3.1084 -7.9398 -2.6604
33 1 0.5284 -8.3348 -4.2471
34 1 2.0629 -9.1605 -4.6238
35 1 0.4840 -10.4970 -3.1514
36 1 2.0996 -10.2349 -2.4567
37 1 0.0836 -9.6811 -0.9623
38 1 2.3843 -4.1406 0.8603
39 1 3.1650 -3.3639 -0.5453
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001332153528.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:04:12
Heat of formation + Delta-G solvation = -149.646324 kcal
Electronic energy + Delta-G solvation = -23190.470400 eV
Core-core repulsion = 19710.480944 eV
Total energy + Delta-G solvation = -3479.989456 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 282.141 amu
Computer time = 1.26 seconds
Orbital eigenvalues (eV)
-42.04781 -40.48484 -38.97681 -37.52103 -36.15628 -34.22756 -34.15971 -31.71578
-30.80633 -30.00258 -27.30648 -25.71840 -24.11569 -23.69035 -21.79200 -20.88627
-19.73977 -19.22938 -18.59044 -18.17567 -17.68374 -16.94481 -16.80312 -16.49713
-16.06003 -15.74590 -15.28668 -15.06723 -14.98790 -14.69708 -14.40922 -13.94463
-13.87460 -13.49436 -13.27379 -13.15965 -12.92117 -12.68042 -12.50891 -12.43469
-12.28168 -12.25902 -12.01488 -11.90646 -11.32516 -11.07835 -10.86340 -10.63966
-10.16516 -10.10385 -9.69116 -8.25092 -6.40316 1.17656 1.40635 1.44678
1.49779 1.55201 2.00944 2.34595 2.40168 2.99823 3.27102 3.51426
3.64175 3.81373 3.83988 3.93641 4.05533 4.13159 4.27926 4.39284
4.53463 4.55482 4.60637 4.73775 4.83278 4.87044 5.01576 5.06981
5.12503 5.18001 5.33542 5.43090 5.49584 5.74694 5.78506 6.06050
6.17611 6.49882 6.63754 6.96623 7.08919 7.29759 7.39068 8.81475
Molecular weight = 282.14amu
Principal moments of inertia in cm(-1)
A = 0.036670 B = 0.004254 C = 0.004123
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 763.375321 B = 6579.947700 C = 6790.078224
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.906 5.906
2 C 0.038 3.962
3 Si 0.962 3.038
4 H -0.276 1.276
5 H -0.272 1.272
6 H -0.279 1.279
7 C -0.563 4.563
8 H 0.052 0.948
9 C 0.234 3.766
10 O -0.595 6.595
11 C -0.122 4.122
12 C 0.104 3.896
13 N -0.601 5.601
14 C 0.535 3.465
15 O -0.585 6.585
16 C -0.117 4.117
17 H 0.142 0.858
18 C -0.109 4.109
19 C -0.128 4.128
20 C 0.099 3.901
21 N -0.704 5.704
22 C 0.527 3.473
23 O -0.593 6.593
24 C 0.128 3.872
25 H 0.272 0.728
26 H 0.379 0.621
27 H 0.065 0.935
28 H 0.080 0.920
29 H 0.103 0.897
30 H 0.059 0.941
31 H 0.092 0.908
32 H 0.067 0.933
33 H 0.087 0.913
34 H 0.122 0.878
35 H 0.116 0.884
36 H 0.076 0.924
37 H 0.408 0.592
38 H 0.035 0.965
39 H 0.065 0.935
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.894 -16.769 -12.831 21.199
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.544 5.544
2 C -0.163 4.163
3 Si 0.788 3.212
4 H -0.200 1.200
5 H -0.198 1.198
6 H -0.205 1.205
7 C -0.601 4.601
8 H 0.070 0.930
9 C 0.195 3.805
10 O -0.404 6.404
11 C -0.160 4.160
12 C -0.017 4.017
13 N -0.332 5.332
14 C 0.323 3.677
15 O -0.467 6.467
16 C -0.141 4.141
17 H 0.160 0.840
18 C -0.147 4.147
19 C -0.165 4.165
20 C -0.024 4.024
21 N -0.355 5.355
22 C 0.312 3.688
23 O -0.474 6.474
24 C 0.005 3.995
25 H 0.082 0.918
26 H 0.229 0.771
27 H 0.084 0.916
28 H 0.099 0.901
29 H 0.121 0.879
30 H 0.077 0.923
31 H 0.111 0.889
32 H 0.086 0.914
33 H 0.106 0.894
34 H 0.140 0.860
35 H 0.134 0.866
36 H 0.094 0.906
37 H 0.244 0.756
38 H 0.053 0.947
39 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges -1.177 -17.064 -12.242 21.034
hybrid contribution -0.062 1.475 0.799 1.678
sum -1.239 -15.589 -11.443 19.378
Atomic orbital electron populations
1.69770 1.06620 1.28409 1.49635 1.25603 0.95884 1.01987 0.92868
0.85445 0.78693 0.79132 0.77942 1.20046 1.19761 1.20470 1.21722
0.93418 0.91604 1.53388 0.92962 1.19645 0.87504 0.90380 0.83005
1.86160 1.51899 1.56358 1.45990 1.23075 1.01600 0.92162 0.99200
1.22526 0.83543 0.95127 1.00532 1.48607 1.19764 1.18030 1.46789
1.20239 0.86384 0.80889 0.80143 1.90624 1.20431 1.76665 1.58936
1.21447 1.00403 0.95250 0.96952 0.84018 1.21678 0.97283 0.98645
0.97135 1.21951 1.02009 0.94435 0.98096 1.21840 0.99872 0.96058
0.84595 1.45402 1.55522 1.06554 1.28061 1.19650 0.79162 0.84358
0.85586 1.90828 1.49336 1.78891 1.28341 1.21826 0.96650 0.88954
0.92047 0.91826 0.77109 0.91649 0.90110 0.87906 0.92256 0.88907
0.91388 0.89431 0.86025 0.86583 0.90554 0.75552 0.94675 0.91627
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -46.90 10.67 21.45 0.23 -46.68 16
2 C 0.04 1.98 5.28 84.66 0.45 2.43 16
3 Si 0.96 41.86 29.54 68.60 2.03 43.89 16
4 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16
5 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16
6 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16
7 C -0.56 -30.73 8.23 25.60 0.21 -30.52 16
8 H 0.05 2.90 7.59 -2.91 -0.02 2.88 16
9 C 0.23 12.05 0.84 -10.35 -0.01 12.05 16
10 O -0.60 -32.40 13.06 -148.98 -1.95 -34.35 16
11 C -0.12 -5.41 5.47 31.99 0.17 -5.23 16
12 C 0.10 3.99 6.55 86.86 0.57 4.56 16
13 N -0.60 -25.85 3.33 -811.79 -2.70 -28.55 16
14 C 0.53 21.34 6.37 87.66 0.56 21.90 16
15 O -0.59 -26.98 16.38 -3.04 -0.05 -27.03 16
16 C -0.12 -3.22 2.46 -12.43 -0.03 -3.25 16
17 H 0.14 3.22 6.36 -2.39 -0.02 3.20 16
18 C -0.11 -2.10 5.16 30.74 0.16 -1.94 16
19 C -0.13 -1.18 6.02 30.69 0.18 -1.00 16
20 C 0.10 0.94 7.17 86.49 0.62 1.56 16
21 N -0.70 -13.34 5.45 -467.31 -2.55 -15.89 16
22 C 0.53 15.57 7.28 87.71 0.64 16.21 16
23 O -0.59 -23.97 17.20 -3.04 -0.05 -24.02 16
24 C 0.13 6.38 6.23 86.73 0.54 6.92 16
25 H 0.27 13.31 8.31 -92.70 -0.77 12.54 16
26 H 0.38 20.31 7.46 -74.06 -0.55 19.76 16
27 H 0.06 2.90 8.04 -2.39 -0.02 2.88 16
28 H 0.08 3.71 7.53 -2.39 -0.02 3.69 16
29 H 0.10 2.97 6.85 -2.39 -0.02 2.95 16
30 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16
31 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16
32 H 0.07 1.59 7.46 -2.39 -0.02 1.58 16
33 H 0.09 0.67 8.12 -2.39 -0.02 0.65 16
34 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16
35 H 0.12 0.35 8.14 -2.38 -0.02 0.33 16
36 H 0.08 0.67 8.14 -2.39 -0.02 0.66 16
37 H 0.41 6.84 8.80 -92.71 -0.82 6.03 16
38 H 0.03 1.88 8.07 -2.39 -0.02 1.86 16
39 H 0.07 3.29 7.67 -2.39 -0.02 3.27 16
Total: -1.00 -74.34 316.98 -1.26 -75.59
By element:
Atomic # 1 Polarization: 33.63 SS G_CDS: -0.28 Total: 33.35 kcal
Atomic # 6 Polarization: 19.63 SS G_CDS: 4.06 Total: 23.69 kcal
Atomic # 7 Polarization: -86.10 SS G_CDS: -5.02 Total: -91.12 kcal
Atomic # 8 Polarization: -83.36 SS G_CDS: -2.05 Total: -85.40 kcal
Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal
Total: -74.34 -1.26 -75.59 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001332153528.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -74.055 kcal
(2) G-P(sol) polarization free energy of solvation -74.335 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.390 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.256 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.591 kcal
(6) G-S(sol) free energy of system = (1) + (5) -149.646 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.26 seconds