Wall clock time and date at job start Tue Mar 31 2020 02:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99593 * 2 1 4 4 H 1.48496 * 109.46904 * 239.99650 * 3 2 1 5 5 H 1.48496 * 109.47236 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46960 * 120.00057 * 3 2 1 7 7 C 1.37876 * 120.00586 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00434 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99383 * 0.02562 * 7 2 1 10 10 O 1.42902 * 110.78229 * 56.76389 * 9 7 2 11 11 C 1.55154 * 110.72512 * 293.52001 * 9 7 2 12 12 C 1.54909 * 101.58360 * 206.13796 * 11 9 7 13 13 N 1.47419 * 104.83045 * 37.01035 * 12 11 9 14 14 C 1.34781 * 125.64774 * 155.91942 * 13 12 11 15 15 O 1.21280 * 120.00283 * 174.89882 * 14 13 12 16 16 C 1.50698 * 119.99952 * 354.89797 * 14 13 12 17 17 H 1.09007 * 109.39667 * 25.12832 * 16 14 13 18 18 C 1.53066 * 109.40352 * 265.30333 * 16 14 13 19 19 C 1.53347 * 108.42753 * 190.97216 * 18 16 14 20 20 C 1.52917 * 108.67589 * 67.52558 * 19 18 16 21 21 N 1.45753 * 110.48882 * 309.25037 * 20 19 18 22 22 C 1.33353 * 124.10623 * 19.07452 * 21 20 19 23 23 O 1.21288 * 118.24911 * 177.77885 * 22 21 20 24 24 C 1.47022 * 108.70651 * 335.87034 * 13 12 11 25 25 H 0.96999 * 120.00608 * 0.02562 * 1 2 3 26 26 H 0.96699 * 113.99588 * 303.23757 * 10 9 7 27 27 H 1.09005 * 110.99993 * 324.21581 * 11 9 7 28 28 H 1.08996 * 111.00215 * 88.02272 * 11 9 7 29 29 H 1.08997 * 110.36335 * 155.84744 * 12 11 9 30 30 H 1.08996 * 110.36505 * 278.17048 * 12 11 9 31 31 H 1.08997 * 109.66902 * 310.70412 * 18 16 14 32 32 H 1.09001 * 109.67444 * 71.23533 * 18 16 14 33 33 H 1.08994 * 109.60501 * 187.28823 * 19 18 16 34 34 H 1.09003 * 109.59680 * 307.60636 * 19 18 16 35 35 H 1.09000 * 109.30085 * 69.55904 * 20 19 18 36 36 H 1.08995 * 109.30117 * 189.14756 * 20 19 18 37 37 H 0.96999 * 117.94955 * 199.07094 * 21 20 19 38 38 H 1.09005 * 109.88344 * 241.64238 * 24 13 12 39 39 H 1.09001 * 109.88332 * 120.48077 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 8 0.3638 -2.5723 -1.1173 11 6 0.4745 -2.6847 1.3309 12 6 0.3793 -4.2282 1.4226 13 7 1.6650 -4.7177 0.8931 14 6 2.2302 -5.9076 1.1785 15 8 3.2481 -6.2466 0.6131 16 6 1.5972 -6.8167 2.2001 17 1 0.5313 -6.5985 2.2678 18 6 2.2517 -6.5827 3.5639 19 6 1.7960 -7.6940 4.5173 20 6 2.3912 -9.0204 4.0433 21 7 2.1217 -9.2227 2.6252 22 6 1.7864 -8.2463 1.7811 23 8 1.6255 -8.5279 0.6124 24 6 2.2282 -3.6936 0.0011 25 1 -0.4851 0.8400 -0.0004 26 1 -0.2708 -1.8442 -1.1639 27 1 1.0364 -2.2772 2.1713 28 1 -0.5162 -2.2344 1.2709 29 1 0.2529 -4.5394 2.4596 30 1 -0.4464 -4.5942 0.8125 31 1 3.3363 -6.6103 3.4599 32 1 1.9448 -5.6134 3.9568 33 1 2.1454 -7.4761 5.5264 34 1 0.7077 -7.7562 4.5127 35 1 3.4687 -9.0109 4.2074 36 1 1.9473 -9.8379 4.6113 37 1 2.1908 -10.1240 2.2734 38 1 2.3253 -4.0937 -1.0082 39 1 3.2029 -3.3752 0.3711 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332153529.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:16 Heat of formation + Delta-G solvation = -123.673404 kcal Electronic energy + Delta-G solvation = -23105.622360 eV Core-core repulsion = 19626.759175 eV Total energy + Delta-G solvation = -3478.863185 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.80182 -38.98137 -37.14504 -36.55694 -34.35585 -33.19289 -32.16678 -30.34707 -29.44432 -28.28667 -25.65896 -24.60798 -22.96806 -22.31995 -20.24008 -19.36172 -18.58563 -17.54798 -17.24987 -16.81008 -16.38295 -15.32624 -15.09119 -14.90603 -14.55759 -14.35570 -14.17308 -14.02495 -13.60031 -13.48574 -12.97301 -12.49290 -12.08511 -11.93293 -11.76389 -11.54673 -11.46798 -11.41003 -11.36528 -11.20266 -10.88638 -10.63762 -10.52996 -10.13760 -9.78345 -9.47641 -9.32198 -9.19472 -8.68244 -8.22911 -8.01711 -6.31492 -4.38935 2.56900 2.85005 3.20449 3.22878 3.25584 3.29187 3.57862 4.24933 4.35801 4.46966 4.50127 4.56912 4.91759 4.98629 5.06987 5.14013 5.29597 5.45177 5.48625 5.54388 5.68387 5.74250 5.88469 5.92013 6.00891 6.18658 6.47895 6.67011 6.68701 6.87805 6.95089 7.17807 7.27284 7.31534 7.71499 7.98285 8.07006 8.18023 8.58387 8.64001 9.29767 9.45310 10.76334 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.033128 B = 0.004205 C = 0.004086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.999343 B = 6656.526973 C = 6850.880961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.073 3.927 3 Si 0.904 3.096 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.536 4.536 8 H 0.065 0.935 9 C 0.248 3.752 10 O -0.586 6.586 11 C -0.136 4.136 12 C 0.093 3.907 13 N -0.605 5.605 14 C 0.543 3.457 15 O -0.540 6.540 16 C -0.122 4.122 17 H 0.121 0.879 18 C -0.113 4.113 19 C -0.135 4.135 20 C 0.110 3.890 21 N -0.722 5.722 22 C 0.539 3.461 23 O -0.534 6.534 24 C 0.123 3.877 25 H 0.270 0.730 26 H 0.386 0.614 27 H 0.068 0.932 28 H 0.086 0.914 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.400 0.600 38 H 0.063 0.937 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.369 -12.214 12.855 17.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.129 4.129 3 Si 0.731 3.269 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.574 4.574 8 H 0.083 0.917 9 C 0.208 3.792 10 O -0.396 6.396 11 C -0.175 4.175 12 C -0.030 4.030 13 N -0.338 5.338 14 C 0.329 3.671 15 O -0.417 6.417 16 C -0.146 4.146 17 H 0.138 0.862 18 C -0.151 4.151 19 C -0.172 4.172 20 C -0.015 4.015 21 N -0.376 5.376 22 C 0.324 3.676 23 O -0.409 6.409 24 C 0.001 3.999 25 H 0.080 0.920 26 H 0.238 0.762 27 H 0.086 0.914 28 H 0.104 0.896 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.236 0.764 38 H 0.081 0.919 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.286 -12.780 11.904 17.468 hybrid contribution 0.009 1.102 0.192 1.119 sum 0.296 -11.677 12.097 16.816 Atomic orbital electron populations 1.69562 1.05981 1.27872 1.50396 1.24981 0.95023 0.99532 0.93412 0.86454 0.79531 0.81973 0.78911 1.19959 1.21083 1.20058 1.21514 0.93723 0.90224 1.51929 0.91718 1.19427 0.86169 0.90699 0.82923 1.86120 1.51279 1.53201 1.48981 1.23315 1.02899 0.90099 1.01170 1.22543 0.85380 0.97877 0.97162 1.48542 1.22444 1.16183 1.46603 1.19239 0.84541 0.80620 0.82678 1.90692 1.25413 1.73352 1.52252 1.21358 1.03849 0.92556 0.96857 0.86155 1.21611 1.01696 1.00116 0.91671 1.21884 1.01785 0.93671 0.99907 1.21404 1.00690 0.98418 0.80976 1.45347 1.71416 1.11041 1.09757 1.19386 0.75969 0.86774 0.85445 1.90794 1.49962 1.82792 1.17366 1.22107 0.97320 0.87398 0.93053 0.92013 0.76217 0.91373 0.89570 0.92178 0.91706 0.90176 0.89564 0.89164 0.90575 0.91510 0.90466 0.76415 0.91911 0.90993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.78 10.70 55.43 0.59 -22.18 16 2 C 0.07 1.85 5.28 -17.82 -0.09 1.75 16 3 Si 0.90 20.00 29.54 -169.99 -5.02 14.98 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.54 -13.89 8.21 -34.44 -0.28 -14.17 16 8 H 0.06 1.68 7.53 -52.49 -0.40 1.28 16 9 C 0.25 6.00 0.86 -89.94 -0.08 5.92 16 10 O -0.59 -14.99 13.09 -35.23 -0.46 -15.45 16 11 C -0.14 -2.85 5.67 -24.58 -0.14 -2.99 16 12 C 0.09 1.66 6.33 -2.53 -0.02 1.64 16 13 N -0.61 -12.27 3.33 -170.52 -0.57 -12.84 16 14 C 0.54 10.77 6.45 -10.98 -0.07 10.70 16 15 O -0.54 -12.76 16.51 -6.07 -0.10 -12.86 16 16 C -0.12 -1.78 2.28 -93.14 -0.21 -1.99 16 17 H 0.12 1.54 6.74 -51.92 -0.35 1.19 16 18 C -0.11 -1.19 5.32 -26.52 -0.14 -1.34 16 19 C -0.13 -0.92 6.02 -26.59 -0.16 -1.08 16 20 C 0.11 0.75 7.17 -4.49 -0.03 0.72 16 21 N -0.72 -7.79 5.45 -61.39 -0.33 -8.13 16 22 C 0.54 8.42 6.90 -11.87 -0.08 8.33 16 23 O -0.53 -10.94 16.93 -6.08 -0.10 -11.04 16 24 C 0.12 2.84 6.22 -3.06 -0.02 2.82 16 25 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 26 H 0.39 9.88 6.99 45.56 0.32 10.19 16 27 H 0.07 1.43 8.04 -51.93 -0.42 1.01 16 28 H 0.09 1.87 7.77 -51.93 -0.40 1.47 16 29 H 0.06 0.84 7.24 -51.93 -0.38 0.46 16 30 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.08 0.94 8.09 -51.93 -0.42 0.52 16 32 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.48 8.12 -51.93 -0.42 0.06 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.40 3.81 8.80 -40.82 -0.36 3.45 16 38 H 0.06 1.55 8.07 -51.93 -0.42 1.13 16 39 H 0.07 1.66 7.63 -51.93 -0.40 1.26 16 LS Contribution 317.63 15.07 4.79 4.79 Total: -1.00 -32.89 317.63 -7.42 -40.32 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -4.89 Total: 12.11 kcal Atomic # 6 Polarization: 11.64 SS G_CDS: -1.33 Total: 10.31 kcal Atomic # 7 Polarization: -42.84 SS G_CDS: -0.31 Total: -43.15 kcal Atomic # 8 Polarization: -38.69 SS G_CDS: -0.66 Total: -39.35 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.89 -7.42 -40.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332153529.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.358 kcal (2) G-P(sol) polarization free energy of solvation -32.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds