Wall clock time and date at job start Tue Mar 31 2020 02:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99593 * 2 1 4 4 H 1.48496 * 109.46904 * 239.99650 * 3 2 1 5 5 H 1.48496 * 109.47236 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46960 * 120.00057 * 3 2 1 7 7 C 1.37876 * 120.00586 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00434 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99383 * 0.02562 * 7 2 1 10 10 O 1.42902 * 110.78229 * 56.76389 * 9 7 2 11 11 C 1.55154 * 110.72512 * 293.52001 * 9 7 2 12 12 C 1.54909 * 101.58360 * 206.13796 * 11 9 7 13 13 N 1.47419 * 104.83045 * 37.01035 * 12 11 9 14 14 C 1.34781 * 125.64774 * 155.91942 * 13 12 11 15 15 O 1.21280 * 120.00283 * 174.89882 * 14 13 12 16 16 C 1.50698 * 119.99952 * 354.89797 * 14 13 12 17 17 H 1.09007 * 109.39667 * 25.12832 * 16 14 13 18 18 C 1.53066 * 109.40352 * 265.30333 * 16 14 13 19 19 C 1.53347 * 108.42753 * 190.97216 * 18 16 14 20 20 C 1.52917 * 108.67589 * 67.52558 * 19 18 16 21 21 N 1.45753 * 110.48882 * 309.25037 * 20 19 18 22 22 C 1.33353 * 124.10623 * 19.07452 * 21 20 19 23 23 O 1.21288 * 118.24911 * 177.77885 * 22 21 20 24 24 C 1.47022 * 108.70651 * 335.87034 * 13 12 11 25 25 H 0.96999 * 120.00608 * 0.02562 * 1 2 3 26 26 H 0.96699 * 113.99588 * 303.23757 * 10 9 7 27 27 H 1.09005 * 110.99993 * 324.21581 * 11 9 7 28 28 H 1.08996 * 111.00215 * 88.02272 * 11 9 7 29 29 H 1.08997 * 110.36335 * 155.84744 * 12 11 9 30 30 H 1.08996 * 110.36505 * 278.17048 * 12 11 9 31 31 H 1.08997 * 109.66902 * 310.70412 * 18 16 14 32 32 H 1.09001 * 109.67444 * 71.23533 * 18 16 14 33 33 H 1.08994 * 109.60501 * 187.28823 * 19 18 16 34 34 H 1.09003 * 109.59680 * 307.60636 * 19 18 16 35 35 H 1.09000 * 109.30085 * 69.55904 * 20 19 18 36 36 H 1.08995 * 109.30117 * 189.14756 * 20 19 18 37 37 H 0.96999 * 117.94955 * 199.07094 * 21 20 19 38 38 H 1.09005 * 109.88344 * 241.64238 * 24 13 12 39 39 H 1.09001 * 109.88332 * 120.48077 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 8 0.3638 -2.5723 -1.1173 11 6 0.4745 -2.6847 1.3309 12 6 0.3793 -4.2282 1.4226 13 7 1.6650 -4.7177 0.8931 14 6 2.2302 -5.9076 1.1785 15 8 3.2481 -6.2466 0.6131 16 6 1.5972 -6.8167 2.2001 17 1 0.5313 -6.5985 2.2678 18 6 2.2517 -6.5827 3.5639 19 6 1.7960 -7.6940 4.5173 20 6 2.3912 -9.0204 4.0433 21 7 2.1217 -9.2227 2.6252 22 6 1.7864 -8.2463 1.7811 23 8 1.6255 -8.5279 0.6124 24 6 2.2282 -3.6936 0.0011 25 1 -0.4851 0.8400 -0.0004 26 1 -0.2708 -1.8442 -1.1639 27 1 1.0364 -2.2772 2.1713 28 1 -0.5162 -2.2344 1.2709 29 1 0.2529 -4.5394 2.4596 30 1 -0.4464 -4.5942 0.8125 31 1 3.3363 -6.6103 3.4599 32 1 1.9448 -5.6134 3.9568 33 1 2.1454 -7.4761 5.5264 34 1 0.7077 -7.7562 4.5127 35 1 3.4687 -9.0109 4.2074 36 1 1.9473 -9.8379 4.6113 37 1 2.1908 -10.1240 2.2734 38 1 2.3253 -4.0937 -1.0082 39 1 3.2029 -3.3752 0.3711 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332153529.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:15 Heat of formation + Delta-G solvation = -150.069269 kcal Electronic energy + Delta-G solvation = -23106.766971 eV Core-core repulsion = 19626.759175 eV Total energy + Delta-G solvation = -3480.007796 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.03727 -40.48522 -38.87079 -37.55022 -36.17628 -34.22865 -34.15148 -31.68361 -30.80031 -29.97591 -27.24176 -25.81150 -24.19296 -23.59371 -21.76716 -20.85390 -19.76873 -19.25274 -18.64511 -18.11729 -17.61573 -16.95377 -16.55543 -16.44767 -16.12110 -15.70070 -15.41404 -15.16399 -14.85165 -14.72580 -14.39619 -13.87581 -13.84721 -13.51833 -13.25750 -13.17333 -12.95971 -12.65737 -12.56513 -12.43381 -12.28785 -12.27616 -11.99243 -11.95956 -11.31031 -10.98380 -10.88828 -10.62437 -10.15300 -10.08423 -9.69845 -8.25516 -6.40044 1.32345 1.43557 1.45085 1.46260 1.53138 1.98099 2.35015 2.41152 2.99820 3.26697 3.50159 3.68301 3.82130 3.84841 3.97334 4.06682 4.14771 4.28296 4.38525 4.54735 4.56604 4.62332 4.71321 4.78966 4.87579 5.00363 5.07669 5.14839 5.20666 5.30276 5.44777 5.51994 5.75862 5.81887 6.04798 6.21127 6.49777 6.63203 6.98863 7.14973 7.30918 7.44562 8.80963 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.033128 B = 0.004205 C = 0.004086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.999343 B = 6656.526973 C = 6850.880961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.039 3.961 3 Si 0.961 3.039 4 H -0.281 1.281 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.565 4.565 8 H 0.053 0.947 9 C 0.235 3.765 10 O -0.598 6.598 11 C -0.124 4.124 12 C 0.099 3.901 13 N -0.608 5.608 14 C 0.535 3.465 15 O -0.588 6.588 16 C -0.114 4.114 17 H 0.143 0.857 18 C -0.111 4.111 19 C -0.127 4.127 20 C 0.099 3.901 21 N -0.706 5.706 22 C 0.530 3.470 23 O -0.598 6.598 24 C 0.127 3.873 25 H 0.274 0.726 26 H 0.383 0.617 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.112 0.888 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.101 0.899 33 H 0.123 0.877 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.115 0.885 37 H 0.407 0.593 38 H 0.033 0.967 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.122 -12.751 16.195 20.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.162 4.162 3 Si 0.786 3.214 4 H -0.206 1.206 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.603 4.603 8 H 0.071 0.929 9 C 0.195 3.805 10 O -0.408 6.408 11 C -0.163 4.163 12 C -0.022 4.022 13 N -0.340 5.340 14 C 0.324 3.676 15 O -0.469 6.469 16 C -0.138 4.138 17 H 0.161 0.839 18 C -0.149 4.149 19 C -0.164 4.164 20 C -0.024 4.024 21 N -0.357 5.357 22 C 0.316 3.684 23 O -0.479 6.479 24 C 0.004 3.996 25 H 0.083 0.917 26 H 0.235 0.765 27 H 0.087 0.913 28 H 0.097 0.903 29 H 0.130 0.870 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.119 0.881 33 H 0.141 0.859 34 H 0.108 0.892 35 H 0.094 0.906 36 H 0.133 0.867 37 H 0.243 0.757 38 H 0.051 0.949 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.479 -13.346 15.326 20.328 hybrid contribution 0.288 1.237 -0.853 1.530 sum -0.191 -12.109 14.474 18.872 Atomic orbital electron populations 1.69615 1.06598 1.28660 1.49810 1.25577 0.95854 1.01920 0.92849 0.85575 0.78481 0.78726 0.78608 1.20635 1.20161 1.19477 1.21711 0.93494 0.91685 1.53402 0.92885 1.19617 0.86526 0.90358 0.84046 1.86108 1.51452 1.53046 1.50194 1.23090 1.01704 0.92485 0.99009 1.22628 0.84030 0.95442 1.00083 1.48626 1.23169 1.16091 1.46139 1.20267 0.83960 0.80524 0.82840 1.90656 1.27732 1.74274 1.54193 1.21404 1.04935 0.90596 0.96890 0.83950 1.21719 1.00520 1.02703 0.89959 1.21946 1.02656 0.91580 1.00232 1.21836 1.01844 1.00181 0.78519 1.45385 1.68798 1.10352 1.11172 1.19653 0.75784 0.87839 0.85111 1.90766 1.53284 1.83788 1.20094 1.21846 0.97263 0.88130 0.92327 0.91659 0.76546 0.91338 0.90280 0.86997 0.91600 0.91720 0.88093 0.85869 0.89212 0.90578 0.86662 0.75722 0.94867 0.91789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.76 10.70 21.45 0.23 -45.53 16 2 C 0.04 1.99 5.28 84.66 0.45 2.44 16 3 Si 0.96 40.83 29.54 68.60 2.03 42.86 16 4 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.28 -11.30 7.11 99.48 0.71 -10.60 16 6 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 7 C -0.56 -29.89 8.21 25.60 0.21 -29.68 16 8 H 0.05 2.84 7.53 -2.91 -0.02 2.82 16 9 C 0.23 11.58 0.86 -10.35 -0.01 11.57 16 10 O -0.60 -31.47 13.09 -148.98 -1.95 -33.42 16 11 C -0.12 -5.12 5.67 31.98 0.18 -4.93 16 12 C 0.10 3.38 6.33 86.86 0.55 3.93 16 13 N -0.61 -24.75 3.33 -811.80 -2.70 -27.46 16 14 C 0.54 21.36 6.45 87.66 0.57 21.93 16 15 O -0.59 -28.90 16.51 8.09 0.13 -28.76 16 16 C -0.11 -3.13 2.28 -12.43 -0.03 -3.16 16 17 H 0.14 3.20 6.74 -2.38 -0.02 3.19 16 18 C -0.11 -1.98 5.32 30.73 0.16 -1.82 16 19 C -0.13 -1.09 6.02 30.68 0.18 -0.91 16 20 C 0.10 0.93 7.17 86.49 0.62 1.55 16 21 N -0.71 -13.64 5.45 -467.32 -2.55 -16.18 16 22 C 0.53 16.11 6.90 87.71 0.61 16.71 16 23 O -0.60 -25.13 16.93 8.06 0.14 -24.99 16 24 C 0.13 6.13 6.22 86.73 0.54 6.67 16 25 H 0.27 13.11 8.31 -92.71 -0.77 12.34 16 26 H 0.38 20.07 6.99 -74.06 -0.52 19.55 16 27 H 0.07 2.79 8.04 -2.38 -0.02 2.77 16 28 H 0.08 3.37 7.77 -2.39 -0.02 3.35 16 29 H 0.11 2.66 7.24 -2.39 -0.02 2.65 16 30 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.06 1.38 8.09 -2.39 -0.02 1.36 16 32 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 34 H 0.09 0.62 8.12 -2.39 -0.02 0.60 16 35 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 37 H 0.41 7.01 8.80 -92.71 -0.82 6.20 16 38 H 0.03 1.75 8.07 -2.38 -0.02 1.73 16 39 H 0.06 3.11 7.63 -2.39 -0.02 3.09 16 Total: -1.00 -76.11 317.63 -0.89 -77.00 By element: Atomic # 1 Polarization: 32.44 SS G_CDS: -0.25 Total: 32.19 kcal Atomic # 6 Polarization: 20.27 SS G_CDS: 4.03 Total: 24.30 kcal Atomic # 7 Polarization: -84.15 SS G_CDS: -5.02 Total: -89.17 kcal Atomic # 8 Polarization: -85.49 SS G_CDS: -1.68 Total: -87.17 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.86 kcal Total: -76.11 -0.89 -77.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332153529.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.069 kcal (2) G-P(sol) polarization free energy of solvation -76.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds