Wall clock time and date at job start Tue Mar 31 2020 03:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34418 * 124.35106 * 2 1 4 4 O 1.21288 * 124.94305 * 359.60727 * 3 2 1 5 5 C 1.51281 * 110.11952 * 179.57371 * 3 2 1 6 6 C 1.54631 * 104.31067 * 343.67722 * 5 3 2 7 7 C 1.46765 * 124.35316 * 179.97438 * 2 1 3 8 8 H 1.09001 * 110.23936 * 316.03618 * 7 2 1 9 9 C 1.50697 * 110.24695 * 78.03103 * 7 2 1 10 10 O 1.21284 * 119.99959 * 18.55564 * 9 7 2 11 11 N 1.34769 * 120.00237 * 198.55005 * 9 7 2 12 12 C 1.47022 * 125.65058 * 359.69239 * 11 9 7 13 13 C 1.54334 * 107.26906 * 178.85124 * 12 11 9 14 14 C 1.55154 * 103.01943 * 338.13929 * 13 12 11 15 15 O 1.42899 * 111.00932 * 277.23395 * 14 13 12 16 16 C 1.50700 * 111.00261 * 153.38171 * 14 13 12 17 17 H 1.08004 * 119.99866 * 247.80576 * 16 14 13 18 18 C 1.37879 * 120.00139 * 67.80622 * 16 14 13 19 19 N 1.31507 * 119.99752 * 359.97438 * 18 16 14 20 20 Si 1.86793 * 120.00002 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47271 * 90.00004 * 20 18 16 22 22 H 1.48500 * 109.47195 * 209.99932 * 20 18 16 23 23 H 1.48504 * 109.47502 * 330.00275 * 20 18 16 24 24 C 1.47429 * 125.64835 * 180.02562 * 11 9 7 25 25 H 1.09008 * 109.47170 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.47305 * 119.97497 * 1 2 3 27 27 H 1.08996 * 109.47274 * 239.97747 * 1 2 3 28 28 H 1.09002 * 110.48898 * 102.42432 * 5 3 2 29 29 H 1.08998 * 110.48664 * 224.93465 * 5 3 2 30 30 H 1.08999 * 110.96769 * 142.98225 * 6 5 3 31 31 H 1.08994 * 110.97256 * 266.74527 * 6 5 3 32 32 H 1.08996 * 109.88425 * 298.40102 * 12 11 9 33 33 H 1.09008 * 109.87708 * 59.55944 * 12 11 9 34 34 H 1.09002 * 110.84958 * 219.67706 * 13 12 11 35 35 H 1.08990 * 110.66872 * 96.52270 * 13 12 11 36 36 H 0.96696 * 113.99598 * 292.19710 * 15 14 13 37 37 H 0.97003 * 119.99910 * 179.97438 * 19 18 16 38 38 H 1.08996 * 110.36602 * 322.92950 * 24 11 9 39 39 H 1.09003 * 110.36821 * 85.25680 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2234 1.1098 0.0000 4 8 1.7946 2.2443 -0.0068 5 6 3.6898 0.7379 0.0106 6 6 3.7041 -0.7481 0.4380 7 6 2.2931 -1.2117 0.0005 8 1 1.8982 -1.9380 0.7108 9 6 2.3453 -1.8083 -1.3823 10 8 2.0501 -1.1331 -2.3456 11 7 2.7202 -3.0921 -1.5487 12 6 3.1087 -4.0174 -0.4742 13 6 3.4267 -5.3765 -1.1328 14 6 2.6627 -5.2989 -2.4810 15 8 1.2874 -5.6481 -2.3114 16 6 3.3148 -6.1715 -3.5223 17 1 3.8022 -5.7222 -4.3750 18 6 3.2892 -7.5433 -3.3866 19 7 2.6961 -8.0903 -2.3481 20 14 4.0969 -8.6249 -4.6777 21 1 5.5149 -8.8634 -4.3070 22 1 3.3802 -9.9232 -4.7546 23 1 4.0377 -7.9478 -5.9981 24 6 2.8152 -3.7991 -2.8388 25 1 -0.3634 1.0277 0.0005 26 1 -0.3634 -0.5135 -0.8902 27 1 -0.3633 -0.5142 0.8897 28 1 4.1197 0.8528 -0.9845 29 1 4.2328 1.3477 0.7325 30 1 4.4800 -1.2993 -0.0933 31 1 3.8296 -0.8426 1.5166 32 1 3.9908 -3.6376 0.0412 33 1 2.2856 -4.1328 0.2311 34 1 3.0521 -6.1996 -0.5242 35 1 4.4983 -5.4805 -1.3022 36 1 1.1425 -6.5773 -2.0864 37 1 2.6778 -9.0554 -2.2527 38 1 2.0113 -3.4842 -3.5041 39 1 3.7851 -3.6161 -3.3012 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332492224.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:46 Heat of formation + Delta-G solvation = -109.882025 kcal Electronic energy + Delta-G solvation = -23140.429785 eV Core-core repulsion = 19662.164639 eV Total energy + Delta-G solvation = -3478.265146 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.89751 -39.11126 -37.38027 -36.01231 -34.44962 -32.87778 -32.22525 -30.18774 -28.78603 -27.73404 -26.70415 -25.12771 -23.08595 -21.96987 -20.17225 -19.60078 -18.85855 -17.50652 -17.21593 -16.65956 -15.91159 -15.44324 -15.20407 -15.05551 -14.56232 -14.17533 -13.99416 -13.67663 -13.54082 -13.08756 -12.92624 -12.74244 -12.30729 -12.24017 -12.15461 -11.89056 -11.48815 -11.44977 -11.40214 -11.36900 -10.95143 -10.70929 -10.55877 -10.14452 -9.91455 -9.77522 -9.51745 -8.79140 -8.64792 -8.31248 -8.13227 -6.38396 -4.46253 2.51454 2.75814 2.91247 3.13893 3.22342 3.26130 3.47289 4.19444 4.21124 4.29901 4.56253 4.74217 4.89679 4.99478 5.18468 5.28235 5.40649 5.46691 5.50462 5.61134 5.64563 5.70938 5.75386 5.76070 5.90049 6.13628 6.32468 6.35456 6.53350 6.76060 6.83663 7.02233 7.20000 7.22318 7.65164 7.88895 7.96922 8.11965 8.45682 8.56484 9.23109 9.38340 10.69355 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.039015 B = 0.004063 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.502215 B = 6889.557002 C = 6965.361127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.599 5.599 3 C 0.526 3.474 4 O -0.537 6.537 5 C -0.155 4.155 6 C -0.118 4.118 7 C 0.116 3.884 8 H 0.109 0.891 9 C 0.510 3.490 10 O -0.541 6.541 11 N -0.602 5.602 12 C 0.096 3.904 13 C -0.140 4.140 14 C 0.250 3.750 15 O -0.585 6.585 16 C -0.537 4.537 17 H 0.066 0.934 18 C 0.073 3.927 19 N -0.898 5.898 20 Si 0.904 3.096 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.272 1.272 24 C 0.119 3.881 25 H 0.084 0.916 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.107 0.893 29 H 0.105 0.895 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.386 0.614 37 H 0.270 0.730 38 H 0.071 0.929 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.257 7.463 8.998 11.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.332 5.332 3 C 0.314 3.686 4 O -0.414 6.414 5 C -0.195 4.195 6 C -0.156 4.156 7 C 0.008 3.992 8 H 0.127 0.873 9 C 0.296 3.704 10 O -0.419 6.419 11 N -0.335 5.335 12 C -0.026 4.026 13 C -0.178 4.178 14 C 0.209 3.791 15 O -0.395 6.395 16 C -0.575 4.575 17 H 0.084 0.916 18 C -0.129 4.129 19 N -0.538 5.538 20 Si 0.731 3.269 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.196 1.196 24 C -0.002 4.002 25 H 0.102 0.898 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.125 0.875 29 H 0.123 0.877 30 H 0.115 0.885 31 H 0.114 0.886 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.102 0.898 35 H 0.088 0.912 36 H 0.238 0.762 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.613 8.960 8.435 12.411 hybrid contribution 0.467 -1.573 -0.501 1.715 sum 2.080 7.387 7.934 11.038 Atomic orbital electron populations 1.21601 0.77600 1.03742 1.01850 1.47794 1.06568 1.06050 1.72795 1.20802 0.89260 0.84146 0.74354 1.90699 1.78783 1.20933 1.51031 1.22343 0.94902 0.97093 1.05126 1.22615 0.94520 0.95510 1.02924 1.21657 0.93321 0.88535 0.95720 0.87294 1.20384 0.78029 0.81053 0.90927 1.90697 1.49450 1.60046 1.41715 1.48630 1.64682 1.09741 1.10429 1.22240 0.98397 0.91840 0.90148 1.23213 1.01538 0.93155 0.99931 1.19574 0.80377 0.88306 0.90863 1.86097 1.26273 1.33833 1.93312 1.21481 1.36248 0.91309 1.08480 0.91607 1.24981 0.94407 0.97967 0.95567 1.69551 1.43653 1.12017 1.28544 0.86391 0.79238 0.79537 0.81694 1.20401 1.20973 1.19643 1.22429 1.01013 0.92446 0.84338 0.89759 0.91645 0.91937 0.87474 0.87695 0.88513 0.88636 0.92495 0.92255 0.89771 0.91234 0.76173 0.92005 0.91081 0.90964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.18 11.14 59.84 0.67 1.84 16 2 N -0.60 -8.44 2.56 -173.81 -0.45 -8.89 16 3 C 0.53 7.89 8.03 -10.86 -0.09 7.80 16 4 O -0.54 -9.81 17.35 5.55 0.10 -9.71 16 5 C -0.15 -1.70 6.84 -26.74 -0.18 -1.89 16 6 C -0.12 -1.13 6.71 -24.91 -0.17 -1.30 16 7 C 0.12 1.48 2.90 -67.98 -0.20 1.29 16 8 H 0.11 1.18 7.50 -51.93 -0.39 0.79 16 9 C 0.51 8.82 7.02 -10.99 -0.08 8.75 16 10 O -0.54 -11.46 16.84 5.55 0.09 -11.37 16 11 N -0.60 -10.76 3.33 -170.50 -0.57 -11.33 16 12 C 0.10 1.51 6.30 -3.06 -0.02 1.49 16 13 C -0.14 -2.72 5.64 -24.89 -0.14 -2.86 16 14 C 0.25 5.66 0.89 -89.61 -0.08 5.58 16 15 O -0.58 -14.30 13.18 -35.23 -0.46 -14.76 16 16 C -0.54 -13.31 8.25 -34.44 -0.28 -13.60 16 17 H 0.07 1.63 7.77 -52.48 -0.41 1.22 16 18 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 19 N -0.90 -22.08 10.78 55.43 0.60 -21.49 16 20 Si 0.90 19.41 29.54 -169.99 -5.02 14.39 16 21 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 22 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 23 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 24 C 0.12 2.51 6.08 -2.51 -0.02 2.49 16 25 H 0.08 1.06 7.53 -51.92 -0.39 0.67 16 26 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.10 0.90 7.87 -51.93 -0.41 0.49 16 31 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.71 8.11 -51.93 -0.42 0.28 16 33 H 0.06 0.86 7.86 -51.92 -0.41 0.45 16 34 H 0.08 1.73 7.85 -51.93 -0.41 1.32 16 35 H 0.07 1.35 8.03 -51.93 -0.42 0.93 16 36 H 0.39 9.55 6.93 45.56 0.32 9.87 16 37 H 0.27 6.38 8.31 -40.82 -0.34 6.04 16 38 H 0.07 1.63 8.04 -51.93 -0.42 1.21 16 39 H 0.07 1.46 8.01 -51.93 -0.42 1.05 16 LS Contribution 324.51 15.07 4.89 4.89 Total: -1.00 -30.63 324.51 -6.51 -37.14 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -5.02 Total: 9.81 kcal Atomic # 6 Polarization: 11.98 SS G_CDS: -0.68 Total: 11.31 kcal Atomic # 7 Polarization: -41.28 SS G_CDS: -0.41 Total: -41.70 kcal Atomic # 8 Polarization: -35.57 SS G_CDS: -0.27 Total: -35.84 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.02 Total: 14.39 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.63 -6.51 -37.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332492224.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.741 kcal (2) G-P(sol) polarization free energy of solvation -30.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds