Wall clock time and date at job start Tue Mar 31 2020 03:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34418 * 124.35106 * 2 1 4 4 O 1.21288 * 124.94305 * 359.60727 * 3 2 1 5 5 C 1.51281 * 110.11952 * 179.57371 * 3 2 1 6 6 C 1.54631 * 104.31067 * 343.67722 * 5 3 2 7 7 C 1.46765 * 124.35316 * 179.97438 * 2 1 3 8 8 H 1.09001 * 110.23936 * 316.03618 * 7 2 1 9 9 C 1.50697 * 110.24695 * 78.03103 * 7 2 1 10 10 O 1.21284 * 119.99959 * 18.55564 * 9 7 2 11 11 N 1.34769 * 120.00237 * 198.55005 * 9 7 2 12 12 C 1.47022 * 125.65058 * 359.69239 * 11 9 7 13 13 C 1.54334 * 107.26906 * 178.85124 * 12 11 9 14 14 C 1.55154 * 103.01943 * 338.13929 * 13 12 11 15 15 O 1.42899 * 111.00932 * 277.23395 * 14 13 12 16 16 C 1.50700 * 111.00261 * 153.38171 * 14 13 12 17 17 H 1.08004 * 119.99866 * 247.80576 * 16 14 13 18 18 C 1.37879 * 120.00139 * 67.80622 * 16 14 13 19 19 N 1.31507 * 119.99752 * 359.97438 * 18 16 14 20 20 Si 1.86793 * 120.00002 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47271 * 90.00004 * 20 18 16 22 22 H 1.48500 * 109.47195 * 209.99932 * 20 18 16 23 23 H 1.48504 * 109.47502 * 330.00275 * 20 18 16 24 24 C 1.47429 * 125.64835 * 180.02562 * 11 9 7 25 25 H 1.09008 * 109.47170 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.47305 * 119.97497 * 1 2 3 27 27 H 1.08996 * 109.47274 * 239.97747 * 1 2 3 28 28 H 1.09002 * 110.48898 * 102.42432 * 5 3 2 29 29 H 1.08998 * 110.48664 * 224.93465 * 5 3 2 30 30 H 1.08999 * 110.96769 * 142.98225 * 6 5 3 31 31 H 1.08994 * 110.97256 * 266.74527 * 6 5 3 32 32 H 1.08996 * 109.88425 * 298.40102 * 12 11 9 33 33 H 1.09008 * 109.87708 * 59.55944 * 12 11 9 34 34 H 1.09002 * 110.84958 * 219.67706 * 13 12 11 35 35 H 1.08990 * 110.66872 * 96.52270 * 13 12 11 36 36 H 0.96696 * 113.99598 * 292.19710 * 15 14 13 37 37 H 0.97003 * 119.99910 * 179.97438 * 19 18 16 38 38 H 1.08996 * 110.36602 * 322.92950 * 24 11 9 39 39 H 1.09003 * 110.36821 * 85.25680 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2234 1.1098 0.0000 4 8 1.7946 2.2443 -0.0068 5 6 3.6898 0.7379 0.0106 6 6 3.7041 -0.7481 0.4380 7 6 2.2931 -1.2117 0.0005 8 1 1.8982 -1.9380 0.7108 9 6 2.3453 -1.8083 -1.3823 10 8 2.0501 -1.1331 -2.3456 11 7 2.7202 -3.0921 -1.5487 12 6 3.1087 -4.0174 -0.4742 13 6 3.4267 -5.3765 -1.1328 14 6 2.6627 -5.2989 -2.4810 15 8 1.2874 -5.6481 -2.3114 16 6 3.3148 -6.1715 -3.5223 17 1 3.8022 -5.7222 -4.3750 18 6 3.2892 -7.5433 -3.3866 19 7 2.6961 -8.0903 -2.3481 20 14 4.0969 -8.6249 -4.6777 21 1 5.5149 -8.8634 -4.3070 22 1 3.3802 -9.9232 -4.7546 23 1 4.0377 -7.9478 -5.9981 24 6 2.8152 -3.7991 -2.8388 25 1 -0.3634 1.0277 0.0005 26 1 -0.3634 -0.5135 -0.8902 27 1 -0.3633 -0.5142 0.8897 28 1 4.1197 0.8528 -0.9845 29 1 4.2328 1.3477 0.7325 30 1 4.4800 -1.2993 -0.0933 31 1 3.8296 -0.8426 1.5166 32 1 3.9908 -3.6376 0.0412 33 1 2.2856 -4.1328 0.2311 34 1 3.0521 -6.1996 -0.5242 35 1 4.4983 -5.4805 -1.3022 36 1 1.1425 -6.5773 -2.0864 37 1 2.6778 -9.0554 -2.2527 38 1 2.0113 -3.4842 -3.5041 39 1 3.7851 -3.6161 -3.3012 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332492224.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:45 Heat of formation + Delta-G solvation = -132.606427 kcal Electronic energy + Delta-G solvation = -23141.415189 eV Core-core repulsion = 19662.164639 eV Total energy + Delta-G solvation = -3479.250550 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.04292 -40.49892 -38.92003 -37.24036 -36.12302 -34.12634 -33.81448 -31.73241 -30.21023 -29.07092 -27.67976 -26.81222 -24.36329 -23.10224 -21.66299 -21.01503 -20.05495 -19.16163 -18.63755 -17.76875 -17.18797 -16.93290 -16.61250 -16.58402 -16.02710 -15.62633 -15.24235 -14.91058 -14.73900 -14.52114 -14.04717 -14.03510 -13.63858 -13.56211 -13.45939 -13.23400 -13.19851 -13.02398 -12.59382 -12.46325 -12.39640 -12.28188 -12.22132 -11.82919 -11.28906 -11.18050 -10.97554 -10.64049 -10.13071 -9.82486 -9.57811 -8.24750 -6.38613 1.34282 1.42647 1.47073 1.51798 1.54986 1.81373 2.19614 2.41208 3.00779 3.25760 3.42055 3.46713 3.83493 3.88413 4.05391 4.15071 4.28147 4.32876 4.39182 4.44008 4.56013 4.62156 4.72487 4.75278 4.78607 4.89621 4.94422 5.01800 5.21461 5.24929 5.35912 5.47699 5.59000 5.79605 5.95965 6.07257 6.59200 6.65565 6.99326 7.11487 7.33047 7.47151 8.81360 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.039015 B = 0.004063 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.502215 B = 6889.557002 C = 6965.361127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.604 5.604 3 C 0.512 3.488 4 O -0.581 6.581 5 C -0.151 4.151 6 C -0.105 4.105 7 C 0.119 3.881 8 H 0.142 0.858 9 C 0.507 3.493 10 O -0.590 6.590 11 N -0.602 5.602 12 C 0.102 3.898 13 C -0.131 4.131 14 C 0.233 3.767 15 O -0.597 6.597 16 C -0.563 4.563 17 H 0.054 0.946 18 C 0.039 3.961 19 N -0.908 5.908 20 Si 0.957 3.043 21 H -0.270 1.270 22 H -0.282 1.282 23 H -0.279 1.279 24 C 0.124 3.876 25 H 0.076 0.924 26 H 0.046 0.954 27 H 0.095 0.905 28 H 0.098 0.902 29 H 0.134 0.866 30 H 0.106 0.894 31 H 0.139 0.861 32 H 0.105 0.895 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.381 0.619 37 H 0.272 0.728 38 H 0.039 0.961 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.741 7.093 11.331 13.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.336 5.336 3 C 0.302 3.698 4 O -0.461 6.461 5 C -0.190 4.190 6 C -0.143 4.143 7 C 0.012 3.988 8 H 0.159 0.841 9 C 0.295 3.705 10 O -0.471 6.471 11 N -0.334 5.334 12 C -0.019 4.019 13 C -0.170 4.170 14 C 0.193 3.807 15 O -0.407 6.407 16 C -0.601 4.601 17 H 0.073 0.927 18 C -0.162 4.162 19 N -0.548 5.548 20 Si 0.783 3.217 21 H -0.195 1.195 22 H -0.207 1.207 23 H -0.204 1.204 24 C 0.001 3.999 25 H 0.095 0.905 26 H 0.065 0.935 27 H 0.114 0.886 28 H 0.117 0.883 29 H 0.152 0.848 30 H 0.124 0.876 31 H 0.157 0.843 32 H 0.123 0.877 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.233 0.767 37 H 0.082 0.918 38 H 0.057 0.943 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.107 8.563 10.799 14.128 hybrid contribution -0.056 -1.473 -1.305 1.969 sum 3.051 7.089 9.494 12.236 Atomic orbital electron populations 1.21683 0.77451 1.03552 1.02514 1.48037 1.07127 1.06511 1.71901 1.21579 0.91124 0.83682 0.73398 1.90667 1.79900 1.22613 1.52968 1.22404 0.92049 0.98916 1.05662 1.22784 0.92169 0.93719 1.05611 1.21886 0.95659 0.88463 0.92817 0.84106 1.21333 0.76436 0.80263 0.92496 1.90681 1.51402 1.61113 1.43914 1.48664 1.64877 1.10278 1.09616 1.22358 1.01151 0.89183 0.89247 1.22992 1.00691 0.95330 0.97964 1.19779 0.79711 0.88683 0.92505 1.86084 1.27758 1.33410 1.93473 1.21729 1.36986 0.92284 1.09106 0.92730 1.25547 0.94833 0.98759 0.97078 1.69604 1.43751 1.12266 1.29188 0.85567 0.78807 0.77925 0.79363 1.19540 1.20747 1.20381 1.22150 0.99850 0.92091 0.85772 0.90492 0.93495 0.88636 0.88334 0.84818 0.87567 0.84301 0.87703 0.90334 0.90964 0.91393 0.76710 0.91796 0.94282 0.90779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.17 11.14 127.77 1.42 3.60 16 2 N -0.60 -15.89 2.56 -822.39 -2.11 -18.00 16 3 C 0.51 14.66 8.03 87.90 0.71 15.36 16 4 O -0.58 -21.19 17.35 -3.05 -0.05 -21.24 16 5 C -0.15 -2.86 6.84 30.59 0.21 -2.65 16 6 C -0.11 -1.49 6.71 31.77 0.21 -1.27 16 7 C 0.12 2.63 2.90 44.82 0.13 2.76 16 8 H 0.14 2.29 7.50 -2.39 -0.02 2.27 16 9 C 0.51 16.71 7.02 87.66 0.62 17.33 16 10 O -0.59 -25.25 16.84 -3.04 -0.05 -25.30 16 11 N -0.60 -20.47 3.33 -811.72 -2.70 -23.17 16 12 C 0.10 2.81 6.30 86.73 0.55 3.35 16 13 C -0.13 -4.88 5.64 31.79 0.18 -4.70 16 14 C 0.23 10.63 0.89 -10.14 -0.01 10.62 16 15 O -0.60 -29.56 13.18 -148.98 -1.96 -31.52 16 16 C -0.56 -28.24 8.25 25.60 0.21 -28.03 16 17 H 0.05 2.77 7.77 -2.91 -0.02 2.75 16 18 C 0.04 1.91 5.30 84.66 0.45 2.35 16 19 N -0.91 -44.39 10.78 21.45 0.23 -44.16 16 20 Si 0.96 39.61 29.54 68.60 2.03 41.63 16 21 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 22 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 23 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 24 C 0.12 5.28 6.08 86.86 0.53 5.81 16 25 H 0.08 1.96 7.53 -2.38 -0.02 1.94 16 26 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 27 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.11 1.40 7.87 -2.39 -0.02 1.38 16 31 H 0.14 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.10 1.97 8.11 -2.39 -0.02 1.95 16 33 H 0.08 1.92 7.86 -2.38 -0.02 1.90 16 34 H 0.07 2.86 7.85 -2.39 -0.02 2.84 16 35 H 0.07 2.52 8.03 -2.39 -0.02 2.50 16 36 H 0.38 19.14 6.93 -74.06 -0.51 18.62 16 37 H 0.27 12.70 8.31 -92.71 -0.77 11.93 16 38 H 0.04 1.87 8.04 -2.39 -0.02 1.85 16 39 H 0.07 3.06 8.01 -2.39 -0.02 3.04 16 Total: -1.00 -69.70 324.51 1.13 -68.57 By element: Atomic # 1 Polarization: 28.12 SS G_CDS: 0.55 Total: 28.66 kcal Atomic # 6 Polarization: 19.33 SS G_CDS: 5.20 Total: 24.53 kcal Atomic # 7 Polarization: -80.75 SS G_CDS: -4.58 Total: -85.33 kcal Atomic # 8 Polarization: -76.00 SS G_CDS: -2.07 Total: -78.06 kcal Atomic # 14 Polarization: 39.61 SS G_CDS: 2.03 Total: 41.63 kcal Total: -69.70 1.13 -68.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332492224.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.037 kcal (2) G-P(sol) polarization free energy of solvation -69.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds