Wall clock time and date at job start Tue Mar 31 2020 03:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 112.77663 * 2 1 4 4 C 1.53749 * 113.46442 * 229.10237 * 2 1 3 5 5 C 1.53494 * 83.25645 * 271.50308 * 4 2 1 6 6 N 1.47059 * 113.47000 * 130.78097 * 2 1 3 7 7 C 1.34777 * 136.06052 * 267.70153 * 6 2 1 8 8 O 1.21343 * 120.00084 * 359.62207 * 7 6 2 9 9 C 1.49454 * 120.00164 * 179.62875 * 7 6 2 10 10 O 1.21353 * 119.99759 * 359.97438 * 9 7 6 11 11 N 1.34773 * 120.00135 * 180.27489 * 9 7 6 12 12 C 1.47026 * 125.64540 * 359.73977 * 11 9 7 13 13 C 1.54324 * 107.26854 * 181.02402 * 12 11 9 14 14 C 1.55156 * 102.94272 * 22.20089 * 13 12 11 15 15 O 1.42894 * 111.00851 * 82.60587 * 14 13 12 16 16 C 1.50699 * 111.00209 * 206.42141 * 14 13 12 17 17 H 1.08000 * 120.00215 * 359.97438 * 16 14 13 18 18 C 1.37880 * 119.99904 * 179.97438 * 16 14 13 19 19 N 1.31516 * 120.00154 * 359.97438 * 18 16 14 20 20 Si 1.86804 * 120.00141 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.46906 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.46984 * 119.99703 * 20 18 16 23 23 H 1.48500 * 109.46959 * 239.99763 * 20 18 16 24 24 C 1.47422 * 125.65034 * 179.43938 * 11 9 7 25 25 H 1.09005 * 109.46833 * 308.71986 * 1 2 3 26 26 H 1.09002 * 109.47003 * 68.72002 * 1 2 3 27 27 H 1.08996 * 109.47319 * 188.72301 * 1 2 3 28 28 H 1.08999 * 114.39833 * 157.93940 * 4 2 1 29 29 H 1.09002 * 114.27202 * 25.05422 * 4 2 1 30 30 H 1.09007 * 113.46353 * 218.98469 * 5 4 2 31 31 H 1.09000 * 113.47189 * 88.54704 * 5 4 2 32 32 H 1.08996 * 109.88608 * 300.44434 * 12 11 9 33 33 H 1.09005 * 109.88168 * 61.46112 * 12 11 9 34 34 H 1.09003 * 110.71776 * 140.55867 * 13 12 11 35 35 H 1.08998 * 110.72666 * 263.83155 * 13 12 11 36 36 H 0.96695 * 114.00191 * 180.02562 * 15 14 13 37 37 H 0.96998 * 120.00590 * 179.97438 * 19 18 16 38 38 H 1.08999 * 110.36613 * 274.74393 * 24 11 9 39 39 H 1.09000 * 110.36616 * 37.07002 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9520 1.0050 0.0000 4 6 2.1422 -0.9234 -1.0661 5 6 2.0338 -1.9774 0.0445 6 7 2.1157 -0.8811 1.0214 7 6 2.5366 -0.7452 2.2946 8 8 2.4699 0.3348 2.8436 9 6 3.0857 -1.9247 3.0300 10 8 3.1521 -3.0049 2.4810 11 7 3.5015 -1.7900 4.3049 12 6 3.4767 -0.5455 5.0873 13 6 4.0704 -0.8652 6.4755 14 6 4.9177 -2.1368 6.2066 15 8 6.2007 -1.7953 5.6782 16 6 5.0553 -2.9683 7.4559 17 1 4.5905 -2.6431 8.3749 18 6 5.7744 -4.1443 7.4256 19 7 6.3399 -4.5407 6.3063 20 14 5.9443 -5.1755 8.9739 21 1 5.2202 -4.5157 10.0899 22 1 5.3673 -6.5231 8.7370 23 1 7.3810 -5.3070 9.3258 24 6 4.0506 -2.8676 5.1479 25 1 -0.3633 0.6429 0.8018 26 1 -0.3633 0.3730 -0.9576 27 1 -0.3634 -1.0157 0.1558 28 1 3.1654 -0.6721 -1.3455 29 1 1.4949 -1.1091 -1.9232 30 1 2.8851 -2.6571 0.0824 31 1 1.0766 -2.4987 0.0563 32 1 4.0800 0.2156 4.5925 33 1 2.4502 -0.1942 5.1927 34 1 4.7019 -0.0473 6.8225 35 1 3.2786 -1.0743 7.1948 36 1 6.7658 -2.5579 5.4938 37 1 6.8462 -5.3678 6.2850 38 1 3.2443 -3.4201 5.6304 39 1 4.6676 -3.5392 4.5510 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345749810.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:22 Heat of formation + Delta-G solvation = -92.810532 kcal Electronic energy + Delta-G solvation = -22963.147165 eV Core-core repulsion = 19485.622295 eV Total energy + Delta-G solvation = -3477.524871 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.05133 -40.77924 -39.12688 -38.82134 -36.16399 -34.19025 -31.99823 -31.86642 -29.91098 -29.77527 -27.66462 -25.63367 -25.14707 -23.75861 -21.71160 -21.37689 -19.51333 -19.21108 -18.38254 -18.09777 -17.52690 -17.13708 -16.86675 -16.50555 -16.26249 -15.45542 -15.26619 -14.87402 -14.72861 -14.54932 -14.11522 -13.75656 -13.53334 -13.52748 -13.39257 -13.28763 -13.00725 -12.87552 -12.61878 -12.55304 -12.34506 -12.22885 -12.20186 -12.14679 -11.42727 -11.27662 -10.72724 -10.56875 -10.36589 -9.97080 -9.65113 -8.28582 -6.45680 0.29787 1.09617 1.42042 1.45257 1.56433 2.06154 2.26964 2.38953 2.97231 3.07301 3.35286 3.73739 3.90144 4.03981 4.05555 4.11456 4.17534 4.26689 4.30707 4.52057 4.61655 4.67948 4.71281 4.88369 4.91150 4.93769 4.99875 5.01170 5.10255 5.13176 5.29460 5.35466 5.39386 5.72662 5.98246 6.22304 6.32259 6.48221 6.63516 6.90745 7.26785 7.35958 8.77972 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.034961 B = 0.004163 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.704324 B = 6724.437723 C = 7095.525696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.121 3.879 3 H 0.087 0.913 4 C -0.126 4.126 5 C 0.094 3.906 6 N -0.627 5.627 7 C 0.535 3.465 8 O -0.541 6.541 9 C 0.503 3.497 10 O -0.556 6.556 11 N -0.584 5.584 12 C 0.120 3.880 13 C -0.115 4.115 14 C 0.233 3.767 15 O -0.590 6.590 16 C -0.555 4.555 17 H 0.073 0.927 18 C 0.027 3.973 19 N -0.919 5.919 20 Si 0.969 3.031 21 H -0.264 1.264 22 H -0.281 1.281 23 H -0.280 1.280 24 C 0.105 3.895 25 H 0.049 0.951 26 H 0.110 0.890 27 H 0.064 0.936 28 H 0.097 0.903 29 H 0.134 0.866 30 H 0.070 0.930 31 H 0.105 0.895 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.379 0.621 37 H 0.272 0.728 38 H 0.060 0.940 39 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.641 6.604 -13.183 18.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.020 3.980 3 H 0.105 0.895 4 C -0.163 4.163 5 C -0.028 4.028 6 N -0.362 5.362 7 C 0.319 3.681 8 O -0.419 6.419 9 C 0.287 3.713 10 O -0.436 6.436 11 N -0.316 5.316 12 C -0.002 4.002 13 C -0.152 4.152 14 C 0.193 3.807 15 O -0.400 6.400 16 C -0.593 4.593 17 H 0.091 0.909 18 C -0.174 4.174 19 N -0.559 5.559 20 Si 0.794 3.206 21 H -0.188 1.188 22 H -0.206 1.206 23 H -0.205 1.205 24 C -0.017 4.017 25 H 0.068 0.932 26 H 0.128 0.872 27 H 0.083 0.917 28 H 0.116 0.884 29 H 0.152 0.848 30 H 0.088 0.912 31 H 0.123 0.877 32 H 0.083 0.917 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.113 0.887 36 H 0.229 0.771 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.725 7.111 -13.042 18.322 hybrid contribution 0.684 -1.486 0.948 1.890 sum -10.041 5.625 -12.094 16.695 Atomic orbital electron populations 1.21993 0.91528 1.02980 1.04260 1.23016 0.95857 0.96467 0.82667 0.89461 1.23501 1.03435 0.93330 0.96053 1.23376 1.03501 0.91963 0.83945 1.49864 1.58848 1.17912 1.09597 1.19463 0.79614 0.87862 0.81212 1.90695 1.56572 1.28010 1.66606 1.20199 0.80137 0.89181 0.81800 1.90663 1.56851 1.28759 1.67316 1.48695 1.58249 1.13677 1.11008 1.22128 1.01482 0.84981 0.91561 1.22732 0.98992 0.98237 0.95262 1.19896 0.80634 0.90986 0.89219 1.86079 1.28716 1.38586 1.86573 1.21832 1.34300 1.06674 0.96522 0.90917 1.25852 0.93916 0.98130 0.99489 1.69676 1.34499 1.24154 1.27524 0.85330 0.77902 0.78054 0.79287 1.18779 1.20634 1.20534 1.23149 0.96715 0.89668 0.92200 0.93163 0.87155 0.91698 0.88399 0.84794 0.91166 0.87690 0.91675 0.90011 0.89594 0.88743 0.77052 0.91815 0.92190 0.92931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.79 71.98 0.70 -1.33 16 2 C 0.12 2.21 4.96 41.87 0.21 2.42 16 3 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 4 C -0.13 -1.62 8.09 31.01 0.25 -1.36 16 5 C 0.09 2.00 7.24 83.17 0.60 2.61 16 6 N -0.63 -17.76 3.49 -834.94 -2.92 -20.67 16 7 C 0.53 19.97 8.11 87.27 0.71 20.68 16 8 O -0.54 -21.50 14.89 -3.23 -0.05 -21.55 16 9 C 0.50 21.86 7.91 87.27 0.69 22.55 16 10 O -0.56 -25.82 15.46 -3.26 -0.05 -25.87 16 11 N -0.58 -26.33 3.32 -812.91 -2.70 -29.03 16 12 C 0.12 4.85 5.49 86.73 0.48 5.32 16 13 C -0.11 -4.73 6.12 31.78 0.19 -4.54 16 14 C 0.23 11.66 0.89 -10.07 -0.01 11.65 16 15 O -0.59 -31.62 13.19 -148.98 -1.97 -33.59 16 16 C -0.56 -28.99 8.25 25.60 0.21 -28.78 16 17 H 0.07 3.66 7.76 -2.91 -0.02 3.64 16 18 C 0.03 1.39 5.29 84.66 0.45 1.83 16 19 N -0.92 -49.68 10.72 21.45 0.23 -49.45 16 20 Si 0.97 41.39 29.54 68.60 2.03 43.42 16 21 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 22 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 23 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 24 C 0.10 5.24 5.64 86.93 0.49 5.73 16 25 H 0.05 0.84 8.14 -2.38 -0.02 0.83 16 26 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.06 0.89 7.02 -2.39 -0.02 0.88 16 28 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.13 0.72 8.11 -2.39 -0.02 0.70 16 30 H 0.07 1.82 7.39 -2.38 -0.02 1.80 16 31 H 0.11 1.86 7.28 -2.39 -0.02 1.84 16 32 H 0.06 2.68 7.59 -2.39 -0.02 2.66 16 33 H 0.08 2.99 7.68 -2.38 -0.02 2.97 16 34 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 35 H 0.09 3.55 8.01 -2.39 -0.02 3.54 16 36 H 0.38 21.06 6.93 -74.06 -0.51 20.54 16 37 H 0.27 13.99 8.31 -92.71 -0.77 13.22 16 38 H 0.06 3.01 8.03 -2.39 -0.02 3.00 16 39 H 0.05 2.95 7.64 -2.39 -0.02 2.93 16 Total: -1.00 -66.98 322.21 0.10 -66.88 By element: Atomic # 1 Polarization: 32.54 SS G_CDS: 0.55 Total: 33.09 kcal Atomic # 6 Polarization: 31.80 SS G_CDS: 4.98 Total: 36.78 kcal Atomic # 7 Polarization: -93.76 SS G_CDS: -5.39 Total: -99.15 kcal Atomic # 8 Polarization: -78.95 SS G_CDS: -2.06 Total: -81.01 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal Total: -66.98 0.10 -66.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345749810.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.932 kcal (2) G-P(sol) polarization free energy of solvation -66.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds