Wall clock time and date at job start Tue Mar 31 2020 03:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34229 * 116.99794 * 2 1 4 4 O 1.20824 * 120.00481 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99731 * 179.97438 * 3 2 1 6 6 H 1.08994 * 115.55333 * 325.58393 * 5 3 2 7 7 C 1.53004 * 117.49945 * 111.25053 * 5 3 2 8 8 C 1.53003 * 117.49960 * 179.90834 * 5 3 2 9 9 H 1.09002 * 117.49714 * 0.02562 * 8 5 3 10 10 C 1.50694 * 117.49749 * 144.99813 * 8 5 3 11 11 O 1.21283 * 120.00379 * 0.02562 * 10 8 5 12 12 N 1.34780 * 120.00235 * 180.02562 * 10 8 5 13 13 C 1.46499 * 120.00613 * 179.97438 * 12 10 8 14 14 C 1.52997 * 109.47472 * 176.04716 * 13 12 10 15 15 N 1.46501 * 115.54934 * 279.55626 * 14 13 12 16 16 C 1.36933 * 119.99937 * 294.63453 * 15 14 13 17 17 H 1.08000 * 120.00364 * 353.16759 * 16 15 14 18 18 C 1.38820 * 119.99646 * 173.16741 * 16 15 14 19 19 N 1.31610 * 120.00149 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99760 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47100 * 59.99866 * 20 18 16 22 22 H 1.48493 * 109.47113 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47030 * 300.00258 * 20 18 16 24 24 C 1.52993 * 117.49682 * 133.88439 * 14 13 12 25 25 C 1.52996 * 117.49697 * 65.22437 * 14 13 12 26 26 H 1.08998 * 109.47289 * 300.00315 * 1 2 3 27 27 H 1.08994 * 109.47540 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46878 * 60.00295 * 1 2 3 29 29 H 1.08992 * 117.50310 * 214.98035 * 7 5 3 30 30 H 1.09002 * 117.49880 * 359.97438 * 7 5 3 31 31 H 0.97001 * 119.99211 * 359.97438 * 12 10 8 32 32 H 1.08998 * 109.46756 * 296.05444 * 13 12 10 33 33 H 1.09007 * 109.46894 * 56.04514 * 13 12 10 34 34 H 0.97001 * 119.99688 * 114.63531 * 15 14 13 35 35 H 0.97001 * 120.00023 * 179.97438 * 19 18 16 36 36 H 1.09004 * 117.50429 * 0.02562 * 24 14 13 37 37 H 1.09009 * 117.49673 * 145.01946 * 24 14 13 38 38 H 1.09003 * 117.50300 * 214.97758 * 25 14 13 39 39 H 1.09005 * 117.49976 * 359.97438 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 4.0780 0.4895 0.5567 7 6 4.2466 1.8028 -1.2641 8 6 4.2008 2.6671 -0.0016 9 1 3.5297 3.5260 -0.0031 10 6 5.4853 2.8476 0.7654 11 8 5.9775 1.9081 1.3537 12 7 6.0873 4.0530 0.7978 13 6 7.3358 4.2286 1.5439 14 6 7.8565 5.6526 1.3389 15 7 8.5771 5.8875 0.0852 16 6 9.7696 5.2560 -0.1477 17 1 10.2336 4.6728 0.6339 18 6 10.3822 5.3656 -1.3886 19 7 9.8170 6.0767 -2.3410 20 14 12.0093 4.5047 -1.7062 21 1 11.8402 3.0415 -1.5174 22 1 12.4500 4.7771 -3.0978 23 1 13.0313 5.0116 -0.7556 24 6 8.3256 6.4183 2.5776 25 6 7.0107 6.8007 1.8934 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 5.2059 1.3650 -1.5398 30 1 3.6056 2.0927 -2.0968 31 1 5.6939 4.8043 0.3269 32 1 7.1521 4.0580 2.6046 33 1 8.0774 3.5153 1.1842 34 1 8.2095 6.4904 -0.5798 35 1 10.2453 6.1535 -3.2080 36 1 8.2637 5.9075 3.5386 37 1 9.1703 7.0972 2.4597 38 1 6.9908 7.7310 1.3257 39 1 6.0831 6.5415 2.4039 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499177870.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:36:55 Heat of formation + Delta-G solvation = -56.778706 kcal Electronic energy + Delta-G solvation = -21666.441774 eV Core-core repulsion = 18190.479361 eV Total energy + Delta-G solvation = -3475.962414 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.92257 -39.61456 -37.77214 -36.96317 -35.77408 -33.76795 -33.02514 -29.72236 -28.58222 -27.22220 -24.77835 -23.94285 -23.48414 -21.89683 -20.79483 -19.86693 -19.05375 -18.26068 -17.14752 -17.11906 -16.59530 -16.53715 -15.65892 -15.32979 -14.79938 -14.41376 -14.20713 -13.89231 -13.66892 -13.36988 -13.09168 -12.88993 -12.47088 -12.31100 -12.12100 -11.93899 -11.09078 -11.02925 -10.99440 -10.97322 -10.90248 -10.81662 -10.68320 -10.31772 -10.24627 -9.80287 -9.74434 -9.33194 -8.88021 -8.64403 -7.08827 -5.85581 -3.16370 1.80963 2.29111 2.66694 3.37017 3.41292 3.45741 3.46795 3.69901 4.35730 4.38284 4.52060 4.55832 4.66319 4.80901 4.87938 4.92130 5.09097 5.20450 5.22112 5.29913 5.42390 5.45140 5.60858 5.72800 5.76287 5.80306 6.07253 6.08584 6.21957 6.40095 6.53792 6.65438 6.73506 6.81670 7.49124 7.67549 7.82586 8.32961 8.47067 9.43899 9.97210 10.32824 11.36147 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.020266 B = 0.003584 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.299553 B = 7811.443563 C = 8546.906171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.353 6.353 3 C 0.496 3.504 4 O -0.507 6.507 5 C -0.142 4.142 6 H 0.150 0.850 7 C -0.113 4.113 8 C -0.152 4.152 9 H 0.138 0.862 10 C 0.540 3.460 11 O -0.547 6.547 12 N -0.701 5.701 13 C 0.147 3.853 14 C 0.129 3.871 15 N -0.688 5.688 16 C -0.240 4.240 17 H 0.072 0.928 18 C -0.008 4.008 19 N -0.931 5.931 20 Si 0.908 3.092 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.285 1.285 24 C -0.187 4.187 25 C -0.187 4.187 26 H 0.063 0.937 27 H 0.102 0.898 28 H 0.063 0.937 29 H 0.120 0.880 30 H 0.112 0.888 31 H 0.402 0.598 32 H 0.058 0.942 33 H 0.081 0.919 34 H 0.388 0.612 35 H 0.257 0.743 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.372 -7.438 4.557 18.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.269 6.269 3 C 0.339 3.661 4 O -0.394 6.394 5 C -0.162 4.162 6 H 0.168 0.832 7 C -0.150 4.150 8 C -0.173 4.173 9 H 0.155 0.845 10 C 0.325 3.675 11 O -0.426 6.426 12 N -0.350 5.350 13 C 0.021 3.979 14 C 0.034 3.966 15 N -0.328 5.328 16 C -0.371 4.371 17 H 0.090 0.910 18 C -0.205 4.205 19 N -0.578 5.578 20 Si 0.738 3.262 21 H -0.211 1.211 22 H -0.217 1.217 23 H -0.212 1.212 24 C -0.228 4.228 25 C -0.225 4.225 26 H 0.082 0.918 27 H 0.120 0.880 28 H 0.082 0.918 29 H 0.139 0.861 30 H 0.131 0.869 31 H 0.237 0.763 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.223 0.777 35 H 0.067 0.933 36 H 0.101 0.899 37 H 0.114 0.886 38 H 0.110 0.890 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -16.059 -7.904 4.921 18.562 hybrid contribution 0.369 0.246 -0.643 0.781 sum -15.690 -7.657 4.278 17.975 Atomic orbital electron populations 1.23300 0.76109 1.03804 1.02649 1.86501 1.23461 1.32998 1.83944 1.22587 0.90335 0.81302 0.71894 1.90669 1.66895 1.36400 1.45477 1.21670 0.87999 1.00122 1.06379 0.83245 1.23118 1.02772 0.99133 0.90023 1.22338 0.97984 0.95139 1.01834 0.84468 1.19329 0.84441 0.83083 0.80648 1.90689 1.65925 1.40254 1.45722 1.45774 1.25503 1.11128 1.52610 1.21304 0.84765 0.97553 0.94244 1.20152 0.97947 0.89272 0.89193 1.41776 1.22358 1.53576 1.15062 1.19118 0.96505 1.25128 0.96324 0.91036 1.24775 0.99298 1.00506 0.95876 1.69646 1.39975 1.44081 1.04099 0.86261 0.83480 0.79462 0.76966 1.21063 1.21675 1.21153 1.23375 0.97484 1.04945 0.97024 1.23088 0.94822 0.99828 1.04725 0.91800 0.87951 0.91792 0.86145 0.86938 0.76336 0.92410 0.90101 0.77747 0.93343 0.89875 0.88623 0.88959 0.89405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.56 101.05 1.07 1.32 16 2 O -0.35 -3.76 10.57 -39.25 -0.41 -4.18 16 3 C 0.50 6.00 7.74 36.00 0.28 6.28 16 4 O -0.51 -7.14 16.01 -18.75 -0.30 -7.44 16 5 C -0.14 -1.68 5.81 -91.77 -0.53 -2.21 16 6 H 0.15 1.80 7.67 -51.93 -0.40 1.40 16 7 C -0.11 -1.24 9.94 -26.69 -0.27 -1.50 16 8 C -0.15 -1.92 5.70 -91.74 -0.52 -2.44 16 9 H 0.14 1.60 7.67 -51.93 -0.40 1.20 16 10 C 0.54 8.65 7.61 -10.99 -0.08 8.57 16 11 O -0.55 -10.51 16.26 5.55 0.09 -10.42 16 12 N -0.70 -11.18 5.52 -60.30 -0.33 -11.51 16 13 C 0.15 2.65 5.72 -4.04 -0.02 2.62 16 14 C 0.13 2.40 2.16 -131.83 -0.28 2.12 16 15 N -0.69 -16.21 5.49 -47.24 -0.26 -16.47 16 16 C -0.24 -6.39 9.56 -15.06 -0.14 -6.53 16 17 H 0.07 1.89 7.83 -52.49 -0.41 1.47 16 18 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 19 N -0.93 -27.08 13.07 55.49 0.73 -26.35 16 20 Si 0.91 22.03 29.55 -169.99 -5.02 17.01 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 24 C -0.19 -3.15 10.11 -26.70 -0.27 -3.42 16 25 C -0.19 -2.88 10.07 -26.70 -0.27 -3.15 16 26 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 27 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 29 H 0.12 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.40 5.76 8.41 -40.82 -0.34 5.42 16 32 H 0.06 0.97 7.94 -51.93 -0.41 0.56 16 33 H 0.08 1.72 7.79 -51.93 -0.40 1.31 16 34 H 0.39 9.71 8.05 -40.82 -0.33 9.38 16 35 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 36 H 0.08 1.24 8.08 -51.93 -0.42 0.82 16 37 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 38 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 39 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 345.13 15.07 5.20 5.20 Total: -1.00 -32.10 345.13 -7.09 -39.19 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: -5.63 Total: 13.65 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -1.15 Total: 1.32 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: 0.13 Total: -54.33 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: -0.62 Total: -22.04 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.10 -7.09 -39.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499177870.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.585 kcal (2) G-P(sol) polarization free energy of solvation -32.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds