Wall clock time and date at job start Tue Mar 31 2020 03:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34229 * 116.99794 * 2 1 4 4 O 1.20824 * 120.00481 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99731 * 179.97438 * 3 2 1 6 6 H 1.08994 * 115.55333 * 325.58393 * 5 3 2 7 7 C 1.53004 * 117.49945 * 111.25053 * 5 3 2 8 8 C 1.53003 * 117.49960 * 179.90834 * 5 3 2 9 9 H 1.09002 * 117.49714 * 0.02562 * 8 5 3 10 10 C 1.50694 * 117.49749 * 144.99813 * 8 5 3 11 11 O 1.21283 * 120.00379 * 0.02562 * 10 8 5 12 12 N 1.34780 * 120.00235 * 180.02562 * 10 8 5 13 13 C 1.46499 * 120.00613 * 179.97438 * 12 10 8 14 14 C 1.52997 * 109.47472 * 176.04716 * 13 12 10 15 15 N 1.46501 * 115.54934 * 279.55626 * 14 13 12 16 16 C 1.36933 * 119.99937 * 294.63453 * 15 14 13 17 17 H 1.08000 * 120.00364 * 353.16759 * 16 15 14 18 18 C 1.38820 * 119.99646 * 173.16741 * 16 15 14 19 19 N 1.31610 * 120.00149 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99760 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47100 * 59.99866 * 20 18 16 22 22 H 1.48493 * 109.47113 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47030 * 300.00258 * 20 18 16 24 24 C 1.52993 * 117.49682 * 133.88439 * 14 13 12 25 25 C 1.52996 * 117.49697 * 65.22437 * 14 13 12 26 26 H 1.08998 * 109.47289 * 300.00315 * 1 2 3 27 27 H 1.08994 * 109.47540 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46878 * 60.00295 * 1 2 3 29 29 H 1.08992 * 117.50310 * 214.98035 * 7 5 3 30 30 H 1.09002 * 117.49880 * 359.97438 * 7 5 3 31 31 H 0.97001 * 119.99211 * 359.97438 * 12 10 8 32 32 H 1.08998 * 109.46756 * 296.05444 * 13 12 10 33 33 H 1.09007 * 109.46894 * 56.04514 * 13 12 10 34 34 H 0.97001 * 119.99688 * 114.63531 * 15 14 13 35 35 H 0.97001 * 120.00023 * 179.97438 * 19 18 16 36 36 H 1.09004 * 117.50429 * 0.02562 * 24 14 13 37 37 H 1.09009 * 117.49673 * 145.01946 * 24 14 13 38 38 H 1.09003 * 117.50300 * 214.97758 * 25 14 13 39 39 H 1.09005 * 117.49976 * 359.97438 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 4.0780 0.4895 0.5567 7 6 4.2466 1.8028 -1.2641 8 6 4.2008 2.6671 -0.0016 9 1 3.5297 3.5260 -0.0031 10 6 5.4853 2.8476 0.7654 11 8 5.9775 1.9081 1.3537 12 7 6.0873 4.0530 0.7978 13 6 7.3358 4.2286 1.5439 14 6 7.8565 5.6526 1.3389 15 7 8.5771 5.8875 0.0852 16 6 9.7696 5.2560 -0.1477 17 1 10.2336 4.6728 0.6339 18 6 10.3822 5.3656 -1.3886 19 7 9.8170 6.0767 -2.3410 20 14 12.0093 4.5047 -1.7062 21 1 11.8402 3.0415 -1.5174 22 1 12.4500 4.7771 -3.0978 23 1 13.0313 5.0116 -0.7556 24 6 8.3256 6.4183 2.5776 25 6 7.0107 6.8007 1.8934 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 5.2059 1.3650 -1.5398 30 1 3.6056 2.0927 -2.0968 31 1 5.6939 4.8043 0.3269 32 1 7.1521 4.0580 2.6046 33 1 8.0774 3.5153 1.1842 34 1 8.2095 6.4904 -0.5798 35 1 10.2453 6.1535 -3.2080 36 1 8.2637 5.9075 3.5386 37 1 9.1703 7.0972 2.4597 38 1 6.9908 7.7310 1.3257 39 1 6.0831 6.5415 2.4039 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001499177870.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:36:53 Heat of formation + Delta-G solvation = -78.496830 kcal Electronic energy + Delta-G solvation = -21667.383543 eV Core-core repulsion = 18190.479361 eV Total energy + Delta-G solvation = -3476.904182 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.87917 -40.82924 -39.15141 -37.96403 -36.80067 -35.31134 -34.79232 -31.63543 -29.37215 -28.46513 -25.98061 -25.67003 -24.57972 -23.21897 -21.75231 -21.13645 -20.47220 -19.28203 -19.11128 -18.06995 -17.75007 -17.41621 -17.04262 -16.71686 -16.23211 -15.86239 -15.58647 -15.09684 -14.96364 -14.81299 -14.34229 -13.89448 -13.64593 -13.53596 -13.44376 -12.93199 -12.90971 -12.82794 -12.28792 -12.23604 -11.96560 -11.87807 -11.84388 -11.77252 -11.73913 -11.63827 -11.11296 -10.93214 -10.57963 -10.04530 -9.01845 -7.95481 -5.24280 0.87307 1.37007 1.47110 1.48640 1.53609 1.54443 2.19444 2.53626 2.67883 3.08334 3.39095 3.39768 3.61089 3.65799 3.67851 3.85243 3.92399 4.08481 4.19571 4.29185 4.32826 4.33029 4.56647 4.70286 4.77230 4.80094 4.83680 4.87809 4.94708 5.05778 5.20783 5.25194 5.38488 5.47619 5.55595 6.27825 6.55690 6.60819 7.20346 7.33770 8.07226 8.31050 9.26649 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.020266 B = 0.003584 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.299553 B = 7811.443563 C = 8546.906171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.358 6.358 3 C 0.501 3.499 4 O -0.529 6.529 5 C -0.140 4.140 6 H 0.145 0.855 7 C -0.099 4.099 8 C -0.157 4.157 9 H 0.151 0.849 10 C 0.538 3.462 11 O -0.583 6.583 12 N -0.697 5.697 13 C 0.158 3.842 14 C 0.100 3.900 15 N -0.698 5.698 16 C -0.232 4.232 17 H 0.069 0.931 18 C -0.067 4.067 19 N -0.963 5.963 20 Si 0.964 3.036 21 H -0.283 1.283 22 H -0.295 1.295 23 H -0.279 1.279 24 C -0.184 4.184 25 C -0.155 4.155 26 H 0.063 0.937 27 H 0.133 0.867 28 H 0.066 0.934 29 H 0.117 0.883 30 H 0.134 0.866 31 H 0.411 0.589 32 H 0.074 0.926 33 H 0.042 0.958 34 H 0.377 0.623 35 H 0.251 0.749 36 H 0.107 0.893 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.756 -7.783 5.277 20.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.274 6.274 3 C 0.345 3.655 4 O -0.419 6.419 5 C -0.159 4.159 6 H 0.163 0.837 7 C -0.137 4.137 8 C -0.178 4.178 9 H 0.169 0.831 10 C 0.325 3.675 11 O -0.464 6.464 12 N -0.346 5.346 13 C 0.032 3.968 14 C 0.007 3.993 15 N -0.337 5.337 16 C -0.363 4.363 17 H 0.087 0.913 18 C -0.260 4.260 19 N -0.613 5.613 20 Si 0.793 3.207 21 H -0.209 1.209 22 H -0.221 1.221 23 H -0.205 1.205 24 C -0.224 4.224 25 C -0.192 4.192 26 H 0.082 0.918 27 H 0.151 0.849 28 H 0.085 0.915 29 H 0.136 0.864 30 H 0.152 0.848 31 H 0.247 0.753 32 H 0.092 0.908 33 H 0.060 0.940 34 H 0.211 0.789 35 H 0.060 0.940 36 H 0.125 0.875 37 H 0.098 0.902 38 H 0.111 0.889 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -17.467 -8.255 5.684 20.139 hybrid contribution 0.719 0.317 -0.767 1.098 sum -16.749 -7.938 4.917 19.176 Atomic orbital electron populations 1.23628 0.74169 1.05961 1.02821 1.86490 1.25367 1.32102 1.83421 1.22520 0.90226 0.81411 0.71303 1.90658 1.67333 1.37136 1.46744 1.21627 0.88166 0.99291 1.06862 0.83716 1.23234 1.02860 0.97582 0.89991 1.22248 0.96577 0.96247 1.02711 0.83126 1.19852 0.85143 0.82370 0.80126 1.90669 1.67193 1.41286 1.47302 1.45738 1.24775 1.11669 1.52444 1.21030 0.84694 0.95967 0.95081 1.20347 1.00159 0.90659 0.88118 1.41815 1.22006 1.53233 1.16633 1.19369 0.97354 1.23684 0.95931 0.91298 1.25442 1.02408 1.02042 0.96111 1.69774 1.41300 1.46051 1.04215 0.85362 0.80416 0.78429 0.76474 1.20924 1.22101 1.20534 1.23391 0.97952 1.04029 0.97009 1.23167 0.95297 0.97969 1.02780 0.91818 0.84884 0.91473 0.86448 0.84789 0.75273 0.90832 0.93968 0.78946 0.94018 0.87460 0.90196 0.88920 0.86326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 113.37 1.20 1.54 16 2 O -0.36 -7.04 10.57 -51.41 -0.54 -7.59 16 3 C 0.50 11.42 7.74 71.24 0.55 11.97 16 4 O -0.53 -14.14 16.01 21.97 0.35 -13.79 16 5 C -0.14 -3.15 5.81 -11.54 -0.07 -3.22 16 6 H 0.15 3.42 7.67 -2.39 -0.02 3.40 16 7 C -0.10 -2.03 9.94 30.62 0.30 -1.72 16 8 C -0.16 -3.77 5.70 -11.52 -0.07 -3.84 16 9 H 0.15 3.23 7.67 -2.39 -0.02 3.22 16 10 C 0.54 16.91 7.61 87.65 0.67 17.58 16 11 O -0.58 -22.42 16.26 -3.04 -0.05 -22.47 16 12 N -0.70 -21.58 5.52 -463.06 -2.55 -24.13 16 13 C 0.16 5.60 5.72 86.38 0.49 6.09 16 14 C 0.10 3.61 2.16 3.60 0.01 3.62 16 15 N -0.70 -32.99 5.49 -303.36 -1.66 -34.66 16 16 C -0.23 -12.44 9.56 84.04 0.80 -11.64 16 17 H 0.07 3.66 7.83 -2.91 -0.02 3.64 16 18 C -0.07 -3.77 5.50 84.87 0.47 -3.30 16 19 N -0.96 -56.97 13.07 21.65 0.28 -56.69 16 20 Si 0.96 45.81 29.55 68.60 2.03 47.84 16 21 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 22 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 23 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 24 C -0.18 -5.80 10.11 30.62 0.31 -5.49 16 25 C -0.15 -4.35 10.07 30.62 0.31 -4.04 16 26 H 0.06 0.82 8.13 -2.39 -0.02 0.80 16 27 H 0.13 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.07 0.82 8.13 -2.39 -0.02 0.80 16 29 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.13 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.41 11.22 8.41 -92.71 -0.78 10.44 16 32 H 0.07 2.36 7.94 -2.39 -0.02 2.35 16 33 H 0.04 1.82 7.79 -2.38 -0.02 1.80 16 34 H 0.38 19.08 8.05 -92.71 -0.75 18.33 16 35 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 36 H 0.11 2.87 8.08 -2.39 -0.02 2.85 16 37 H 0.08 2.80 8.14 -2.38 -0.02 2.78 16 38 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 39 H 0.12 2.66 8.14 -2.38 -0.02 2.64 16 Total: -1.00 -69.43 345.13 2.38 -67.05 By element: Atomic # 1 Polarization: 37.32 SS G_CDS: -0.45 Total: 36.87 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: 4.98 Total: 7.56 kcal Atomic # 7 Polarization: -111.54 SS G_CDS: -3.94 Total: -115.48 kcal Atomic # 8 Polarization: -43.60 SS G_CDS: -0.24 Total: -43.84 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -69.43 2.38 -67.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499177870.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.449 kcal (2) G-P(sol) polarization free energy of solvation -69.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds