Wall clock time and date at job start Tue Mar 31 2020 03:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34231 * 117.00042 * 2 1 4 4 O 1.20827 * 119.99907 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99865 * 180.02562 * 3 2 1 6 6 H 1.08995 * 115.56317 * 34.31088 * 5 3 2 7 7 C 1.53004 * 117.49722 * 248.62263 * 5 3 2 8 8 C 1.52995 * 117.49649 * 180.02562 * 5 3 2 9 9 H 1.09001 * 117.52441 * 0.02562 * 8 5 3 10 10 C 1.50705 * 117.49686 * 214.97577 * 8 5 3 11 11 O 1.21277 * 119.99819 * 359.97438 * 10 8 5 12 12 N 1.34777 * 119.99890 * 179.97438 * 10 8 5 13 13 C 1.46497 * 120.00169 * 180.02562 * 12 10 8 14 14 C 1.52996 * 109.47528 * 174.22236 * 13 12 10 15 15 N 1.46500 * 115.55783 * 325.04233 * 14 13 12 16 16 C 1.36930 * 120.00318 * 272.02772 * 15 14 13 17 17 H 1.07996 * 120.00164 * 5.58465 * 16 15 14 18 18 C 1.38820 * 120.00164 * 185.57561 * 16 15 14 19 19 N 1.31614 * 119.99572 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99986 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47287 * 60.00220 * 20 18 16 22 22 H 1.48495 * 109.47201 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47130 * 300.00125 * 20 18 16 24 24 C 1.53002 * 117.50064 * 179.35776 * 14 13 12 25 25 C 1.52998 * 117.50207 * 110.73069 * 14 13 12 26 26 H 1.09005 * 109.47368 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47304 * 299.99950 * 1 2 3 28 28 H 1.08999 * 109.47246 * 59.99837 * 1 2 3 29 29 H 1.08996 * 117.50199 * 145.01811 * 7 5 3 30 30 H 1.08999 * 117.51766 * 359.97438 * 7 5 3 31 31 H 0.96997 * 120.00210 * 0.02562 * 12 10 8 32 32 H 1.09005 * 109.46873 * 54.22194 * 13 12 10 33 33 H 1.09001 * 109.47286 * 294.22589 * 13 12 10 34 34 H 0.97012 * 119.99788 * 92.03578 * 15 14 13 35 35 H 0.97007 * 119.99681 * 179.97438 * 19 18 16 36 36 H 1.09001 * 117.49977 * 145.01929 * 24 14 13 37 37 H 1.08996 * 117.49715 * 359.97438 * 24 14 13 38 38 H 1.09007 * 117.49670 * 0.02562 * 25 14 13 39 39 H 1.09000 * 117.50161 * 214.98181 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 4.0782 0.4885 -0.5552 7 6 4.2464 1.8056 1.2631 8 6 4.2007 2.6670 0.0001 9 1 3.5300 3.5262 0.0013 10 6 5.4857 2.8465 -0.7667 11 8 5.9781 1.9062 -1.3534 12 7 6.0876 4.0519 -0.8003 13 6 7.3364 4.2266 -1.5461 14 6 7.7291 5.7052 -1.5442 15 7 6.6150 6.6552 -1.5952 16 6 6.1124 7.0567 -2.8040 17 1 6.4752 6.6065 -3.7161 18 6 5.1363 8.0423 -2.8570 19 7 4.6944 8.5912 -1.7454 20 14 4.4501 8.5896 -4.5060 21 1 3.8262 7.4297 -5.1921 22 1 3.4289 9.6460 -4.2912 23 1 5.5500 9.1284 -5.3456 24 6 9.0222 6.0937 -2.2638 25 6 8.9638 6.1073 -0.7349 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 5.2057 1.3684 1.5398 30 1 3.6056 2.0982 2.0948 31 1 5.6940 4.8039 -0.3307 32 1 7.1965 3.8891 -2.5731 33 1 8.1257 3.6404 -1.0754 34 1 6.2334 6.9998 -0.7726 35 1 4.0125 9.2802 -1.7824 36 1 9.0441 7.0561 -2.7752 37 1 9.5934 5.2958 -2.7383 38 1 9.4966 5.3182 -0.2042 39 1 8.9472 7.0786 -0.2405 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001499177871.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:36:57 Heat of formation + Delta-G solvation = -76.127985 kcal Electronic energy + Delta-G solvation = -21843.557181 eV Core-core repulsion = 18366.755720 eV Total energy + Delta-G solvation = -3476.801461 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.88412 -40.80448 -39.13751 -37.96855 -36.81655 -35.17807 -34.90066 -31.60583 -29.38810 -28.45805 -26.01239 -25.64934 -24.49593 -23.19820 -21.76195 -21.09316 -20.44803 -19.28066 -19.05064 -18.06113 -17.84483 -17.43655 -17.16534 -16.49070 -16.24433 -15.94793 -15.33495 -15.14224 -15.04310 -14.81165 -14.35629 -13.97810 -13.69772 -13.56929 -13.42210 -12.95396 -12.91077 -12.80086 -12.27458 -12.21641 -11.98095 -11.94920 -11.86370 -11.77807 -11.66720 -11.59898 -11.05911 -10.83980 -10.63336 -9.91871 -9.09949 -7.96188 -5.25191 0.86766 1.36275 1.45347 1.46561 1.52030 1.58917 2.25865 2.53252 2.66528 3.05475 3.36926 3.38104 3.61815 3.64791 3.70052 3.91899 3.95295 4.12713 4.21284 4.28039 4.30256 4.41231 4.56656 4.68041 4.74937 4.81196 4.86605 4.88719 4.90834 5.05183 5.18169 5.24050 5.43089 5.50510 5.57867 6.26790 6.57904 6.60858 7.20260 7.33242 8.05848 8.29789 9.25524 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.014380 B = 0.004453 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.621204 B = 6286.321245 C = 7685.362542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.355 6.355 3 C 0.495 3.505 4 O -0.535 6.535 5 C -0.142 4.142 6 H 0.151 0.849 7 C -0.081 4.081 8 C -0.171 4.171 9 H 0.129 0.871 10 C 0.541 3.459 11 O -0.582 6.582 12 N -0.696 5.696 13 C 0.155 3.845 14 C 0.093 3.907 15 N -0.697 5.697 16 C -0.229 4.229 17 H 0.067 0.933 18 C -0.064 4.064 19 N -0.961 5.961 20 Si 0.960 3.040 21 H -0.287 1.287 22 H -0.296 1.296 23 H -0.279 1.279 24 C -0.172 4.172 25 C -0.160 4.160 26 H 0.137 0.863 27 H 0.066 0.934 28 H 0.057 0.943 29 H 0.137 0.863 30 H 0.132 0.868 31 H 0.408 0.592 32 H 0.045 0.955 33 H 0.084 0.916 34 H 0.379 0.621 35 H 0.251 0.749 36 H 0.077 0.923 37 H 0.111 0.889 38 H 0.120 0.880 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.427 -16.267 8.145 18.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.271 6.271 3 C 0.340 3.660 4 O -0.425 6.425 5 C -0.162 4.162 6 H 0.168 0.832 7 C -0.118 4.118 8 C -0.192 4.192 9 H 0.147 0.853 10 C 0.328 3.672 11 O -0.463 6.463 12 N -0.345 5.345 13 C 0.029 3.971 14 C 0.001 3.999 15 N -0.337 5.337 16 C -0.360 4.360 17 H 0.085 0.915 18 C -0.257 4.257 19 N -0.611 5.611 20 Si 0.790 3.210 21 H -0.213 1.213 22 H -0.222 1.222 23 H -0.205 1.205 24 C -0.210 4.210 25 C -0.198 4.198 26 H 0.155 0.845 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.155 0.845 30 H 0.150 0.850 31 H 0.244 0.756 32 H 0.063 0.937 33 H 0.102 0.898 34 H 0.212 0.788 35 H 0.059 0.941 36 H 0.095 0.905 37 H 0.130 0.870 38 H 0.138 0.862 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.334 -16.560 7.536 18.197 hybrid contribution -1.274 1.419 -0.844 2.086 sum -1.608 -15.141 6.692 16.632 Atomic orbital electron populations 1.23621 0.74355 1.06012 1.02628 1.86477 1.25202 1.31920 1.83477 1.22728 0.90644 0.81357 0.71274 1.90698 1.67548 1.37468 1.46760 1.21666 0.87769 0.99035 1.07712 0.83172 1.23276 1.03228 0.96145 0.89161 1.22198 0.96926 0.95980 1.04116 0.85313 1.19689 0.84768 0.82490 0.80237 1.90640 1.67072 1.41328 1.47291 1.45724 1.25585 1.11306 1.51860 1.21145 0.85704 0.94944 0.95348 1.20467 0.84145 0.88720 1.06572 1.41709 1.36561 1.50388 1.05029 1.19340 1.15611 1.14279 0.86800 0.91479 1.25360 1.01081 0.99768 0.99447 1.69755 1.33674 1.30890 1.26802 0.85421 0.77798 0.77324 0.80459 1.21340 1.22196 1.20478 1.23148 0.99713 1.02821 0.95353 1.23353 0.99690 1.03148 0.93637 0.84502 0.91480 0.92390 0.84534 0.85020 0.75564 0.93658 0.89848 0.78779 0.94059 0.90471 0.87046 0.86150 0.89748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.56 113.37 1.20 1.61 16 2 O -0.35 -7.82 10.57 -51.42 -0.54 -8.37 16 3 C 0.50 13.06 7.74 71.23 0.55 13.61 16 4 O -0.53 -17.44 16.01 21.96 0.35 -17.09 16 5 C -0.14 -3.44 5.81 -11.54 -0.07 -3.51 16 6 H 0.15 3.61 7.67 -2.39 -0.02 3.59 16 7 C -0.08 -1.51 9.94 30.58 0.30 -1.21 16 8 C -0.17 -4.69 5.70 -11.56 -0.07 -4.76 16 9 H 0.13 3.89 7.67 -2.39 -0.02 3.87 16 10 C 0.54 17.96 7.61 87.66 0.67 18.63 16 11 O -0.58 -22.01 16.25 -3.02 -0.05 -22.06 16 12 N -0.70 -23.58 5.39 -463.06 -2.50 -26.08 16 13 C 0.15 5.26 5.90 86.38 0.51 5.77 16 14 C 0.09 3.37 2.51 3.60 0.01 3.37 16 15 N -0.70 -32.30 4.50 -303.35 -1.37 -33.66 16 16 C -0.23 -12.15 9.75 84.04 0.82 -11.33 16 17 H 0.07 3.56 7.83 -2.91 -0.02 3.54 16 18 C -0.06 -3.54 5.50 84.86 0.47 -3.07 16 19 N -0.96 -56.44 13.07 21.65 0.28 -56.16 16 20 Si 0.96 46.07 29.55 68.60 2.03 48.10 16 21 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 22 H -0.30 -14.32 7.11 99.48 0.71 -13.62 16 23 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 24 C -0.17 -5.57 9.90 30.60 0.30 -5.26 16 25 C -0.16 -4.70 10.10 30.60 0.31 -4.40 16 26 H 0.14 1.14 8.14 -2.38 -0.02 1.12 16 27 H 0.07 1.01 8.13 -2.39 -0.02 0.99 16 28 H 0.06 0.99 8.13 -2.39 -0.02 0.97 16 29 H 0.14 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.41 14.11 7.69 -92.71 -0.71 13.39 16 32 H 0.05 1.72 8.13 -2.38 -0.02 1.71 16 33 H 0.08 2.42 7.90 -2.39 -0.02 2.40 16 34 H 0.38 18.65 7.94 -92.70 -0.74 17.91 16 35 H 0.25 14.51 8.31 -92.70 -0.77 13.74 16 36 H 0.08 2.85 8.14 -2.39 -0.02 2.84 16 37 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 38 H 0.12 2.74 8.05 -2.38 -0.02 2.72 16 39 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 Total: -1.00 -69.11 343.99 2.84 -66.27 By element: Atomic # 1 Polarization: 39.96 SS G_CDS: -0.37 Total: 39.59 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: 5.00 Total: 9.46 kcal Atomic # 7 Polarization: -112.32 SS G_CDS: -3.58 Total: -115.90 kcal Atomic # 8 Polarization: -47.28 SS G_CDS: -0.24 Total: -47.52 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -69.11 2.84 -66.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499177871.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.857 kcal (2) G-P(sol) polarization free energy of solvation -69.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds