Wall clock time and date at job start Tue Mar 31 2020 02:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 120.00067 * 2 1 4 4 H 1.48497 * 109.47062 * 239.99706 * 3 2 1 5 5 H 1.48498 * 109.46961 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47229 * 119.99532 * 3 2 1 7 7 C 1.38814 * 120.00020 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00393 * 195.55442 * 7 2 1 9 9 N 1.36939 * 119.99883 * 15.55145 * 7 2 1 10 10 C 1.46965 * 120.59348 * 207.69825 * 9 7 2 11 11 C 1.53372 * 108.63473 * 235.25006 * 10 9 7 12 12 N 1.46962 * 108.63488 * 310.57753 * 11 10 9 13 13 C 1.34772 * 120.59265 * 234.95334 * 12 11 10 14 14 O 1.21287 * 120.00350 * 355.20019 * 13 12 11 15 15 C 1.50700 * 120.00010 * 175.19969 * 13 12 11 16 16 H 1.09004 * 112.85137 * 22.28004 * 15 13 12 17 17 C 1.53786 * 113.61481 * 153.47497 * 15 13 12 18 18 C 1.53780 * 87.08489 * 89.11656 * 17 15 13 19 19 C 1.53779 * 87.07857 * 25.43275 * 18 17 15 20 20 H 1.09002 * 113.61623 * 89.11533 * 19 18 17 21 21 C 1.50700 * 113.61532 * 220.02019 * 19 18 17 22 22 O 1.20823 * 120.00062 * 112.87040 * 21 19 18 23 23 O 1.34233 * 120.00129 * 292.87514 * 21 19 18 24 24 C 1.46967 * 118.81356 * 55.22107 * 12 11 10 25 25 C 1.46962 * 120.59313 * 27.72337 * 9 7 2 26 26 H 0.96993 * 119.99665 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.61201 * 115.50175 * 10 9 7 28 28 H 1.09000 * 109.61133 * 354.99183 * 10 9 7 29 29 H 1.08994 * 109.61319 * 190.82939 * 11 10 9 30 30 H 1.09003 * 109.74722 * 70.40249 * 11 10 9 31 31 H 1.09007 * 113.61228 * 203.66867 * 17 15 13 32 32 H 1.09005 * 113.61025 * 334.47894 * 17 15 13 33 33 H 1.08992 * 113.61243 * 139.98077 * 18 17 15 34 34 H 1.09005 * 113.60985 * 270.80228 * 18 17 15 35 35 H 0.96699 * 117.00400 * 180.02562 * 23 21 19 36 36 H 1.09001 * 109.60621 * 64.52064 * 24 12 11 37 37 H 1.08998 * 109.61124 * 185.02815 * 24 12 11 38 38 H 1.09004 * 109.60733 * 244.49290 * 25 9 7 39 39 H 1.08994 * 109.61131 * 5.00055 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0606 -1.2193 0.2513 9 7 1.3632 -2.3665 -0.3169 10 6 1.8255 -3.6513 0.2267 11 6 2.0882 -4.6111 -0.9404 12 7 0.9193 -4.5983 -1.8312 13 6 0.2861 -5.7450 -2.1483 14 8 0.7302 -6.8080 -1.7692 15 6 -0.9740 -5.7063 -2.9740 16 1 -1.0647 -4.7952 -3.5656 17 6 -1.2214 -6.9919 -3.7810 18 6 -1.9791 -7.5234 -2.5529 19 6 -2.2429 -6.0554 -2.1784 20 1 -3.1565 -5.6510 -2.6142 21 6 -2.1248 -5.7784 -0.7018 22 8 -1.2304 -5.0794 -0.2879 23 8 -3.0131 -6.3084 0.1537 24 6 0.4570 -3.3135 -2.3746 25 6 0.1943 -2.3537 -1.2076 26 1 -0.4849 0.8400 -0.0004 27 1 1.0589 -4.0697 0.8790 28 1 2.7461 -3.5001 0.7902 29 1 2.2448 -5.6193 -0.5569 30 1 2.9715 -4.2880 -1.4913 31 1 -1.8558 -6.8435 -4.6550 32 1 -0.3111 -7.5468 -4.0081 33 1 -2.8824 -8.0791 -2.8041 34 1 -1.3426 -8.0494 -1.8412 35 1 -2.8967 -6.1022 1.0912 36 1 1.2236 -2.8952 -3.0269 37 1 -0.4637 -3.4647 -2.9383 38 1 -0.6884 -2.6797 -0.6575 39 1 0.0377 -1.3456 -1.5912 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574480622.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:03:02 Heat of formation + Delta-G solvation = -61.516609 kcal Electronic energy + Delta-G solvation = -23929.663890 eV Core-core repulsion = 20453.496026 eV Total energy + Delta-G solvation = -3476.167864 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.11880 -39.19448 -37.62924 -36.20341 -35.79835 -33.72957 -31.32181 -30.05580 -27.52048 -27.34690 -25.98148 -23.55021 -22.69397 -22.05683 -21.09716 -19.61273 -18.10257 -17.99086 -17.24291 -16.40090 -16.27703 -15.62212 -14.97046 -14.68531 -14.51469 -14.45368 -13.91568 -13.54011 -13.25474 -13.11464 -12.73721 -12.70447 -12.48939 -11.89541 -11.64177 -11.44273 -11.28585 -11.25007 -10.93349 -10.79289 -10.62922 -10.44937 -10.41220 -10.11803 -10.05520 -9.88443 -9.73312 -9.15574 -8.49613 -8.04186 -6.58892 -5.76974 -3.21066 2.43864 2.93542 3.17078 3.38193 3.43466 3.44673 3.60729 4.29478 4.47194 4.50151 4.68320 4.71224 5.09334 5.31409 5.37508 5.42581 5.50766 5.57015 5.69105 5.85104 5.88827 5.95867 6.03658 6.08643 6.22502 6.26520 6.34645 6.50364 6.60442 6.70630 6.97411 7.11599 7.42456 7.65631 7.77172 8.09796 8.13695 8.44808 8.71581 9.21619 9.84579 10.42834 11.29891 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.026806 B = 0.005361 C = 0.005085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.288983 B = 5221.502145 C = 5505.026217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.000 4.000 3 Si 0.904 3.096 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.250 4.250 8 H 0.066 0.934 9 N -0.590 5.590 10 C 0.136 3.864 11 C 0.102 3.898 12 N -0.574 5.574 13 C 0.540 3.460 14 O -0.567 6.567 15 C -0.125 4.125 16 H 0.107 0.893 17 C -0.119 4.119 18 C -0.118 4.118 19 C -0.088 4.088 20 H 0.132 0.868 21 C 0.470 3.530 22 O -0.471 6.471 23 O -0.522 6.522 24 C 0.081 3.919 25 C 0.162 3.838 26 H 0.254 0.746 27 H 0.029 0.971 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.057 0.943 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.097 0.903 35 H 0.408 0.592 36 H 0.058 0.942 37 H 0.068 0.932 38 H 0.031 0.969 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.237 -11.970 -7.003 15.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.198 4.198 3 Si 0.734 3.266 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.209 1.209 7 C -0.379 4.379 8 H 0.083 0.917 9 N -0.313 5.313 10 C 0.009 3.991 11 C -0.022 4.022 12 N -0.304 5.304 13 C 0.328 3.672 14 O -0.448 6.448 15 C -0.146 4.146 16 H 0.125 0.875 17 C -0.157 4.157 18 C -0.155 4.155 19 C -0.107 4.107 20 H 0.150 0.850 21 C 0.310 3.690 22 O -0.356 6.356 23 O -0.334 6.334 24 C -0.043 4.043 25 C 0.035 3.965 26 H 0.064 0.936 27 H 0.047 0.953 28 H 0.078 0.922 29 H 0.095 0.905 30 H 0.075 0.925 31 H 0.110 0.890 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.116 0.884 35 H 0.267 0.733 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.049 0.951 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.878 -12.209 -7.067 15.283 hybrid contribution 0.346 1.323 0.696 1.534 sum -5.532 -10.886 -6.371 13.773 Atomic orbital electron populations 1.69998 1.05221 1.25479 1.54275 1.25049 0.95328 0.98343 1.01067 0.86338 0.78835 0.83277 0.78114 1.21061 1.21661 1.20931 1.19200 0.92133 0.84571 1.42042 0.91667 1.43942 1.33548 1.01608 1.52173 1.21231 0.97989 0.87071 0.92778 1.22106 0.86648 1.00786 0.92697 1.47703 1.29969 1.06480 1.46258 1.19467 0.83983 0.83769 0.79999 1.90595 1.67605 1.29817 1.56828 1.22557 0.92818 1.01430 0.97781 0.87528 1.22735 1.01505 0.94923 0.96554 1.22901 1.00928 0.93324 0.98349 1.22385 0.99928 1.00590 0.87844 0.85032 1.23262 0.79222 0.76854 0.89688 1.90937 1.32080 1.33895 1.78649 1.84466 1.54791 1.71193 1.22956 1.22683 0.98265 0.84537 0.98806 1.21166 0.89154 0.97812 0.88338 0.93624 0.95346 0.92235 0.90506 0.92484 0.89033 0.89849 0.90330 0.88424 0.73341 0.92327 0.91365 0.95120 0.88510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.11 11.04 55.49 0.61 -25.49 16 2 C 0.00 0.01 4.96 -17.43 -0.09 -0.08 16 3 Si 0.90 21.59 29.58 -169.99 -5.03 16.56 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.25 -6.88 9.59 -15.06 -0.14 -7.03 16 8 H 0.07 1.76 7.88 -52.49 -0.41 1.35 16 9 N -0.59 -15.12 2.97 -172.04 -0.51 -15.63 16 10 C 0.14 3.09 6.67 -3.60 -0.02 3.07 16 11 C 0.10 2.05 6.58 -3.60 -0.02 2.03 16 12 N -0.57 -11.17 2.18 -172.49 -0.38 -11.54 16 13 C 0.54 9.77 4.54 -10.99 -0.05 9.72 16 14 O -0.57 -11.54 14.65 5.55 0.08 -11.46 16 15 C -0.12 -1.69 3.57 -90.96 -0.33 -2.01 16 16 H 0.11 1.30 5.83 -51.93 -0.30 0.99 16 17 C -0.12 -1.26 7.44 -25.92 -0.19 -1.45 16 18 C -0.12 -1.29 7.21 -25.92 -0.19 -1.48 16 19 C -0.09 -1.07 4.21 -90.96 -0.38 -1.45 16 20 H 0.13 1.21 8.14 -51.93 -0.42 0.78 16 21 C 0.47 7.16 7.48 36.01 0.27 7.43 16 22 O -0.47 -9.20 13.53 -18.78 -0.25 -9.46 16 23 O -0.52 -6.50 13.42 -39.27 -0.53 -7.03 16 24 C 0.08 1.56 6.49 -3.60 -0.02 1.54 16 25 C 0.16 3.87 5.51 -3.60 -0.02 3.85 16 26 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.06 1.29 7.93 -51.93 -0.41 0.87 16 29 H 0.08 1.54 7.02 -51.93 -0.36 1.17 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 0.98 7.91 -51.93 -0.41 0.57 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.10 1.33 7.20 -51.93 -0.37 0.95 16 35 H 0.41 3.81 9.10 45.56 0.41 4.22 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.07 1.11 5.25 -51.93 -0.27 0.83 16 38 H 0.03 0.80 7.15 -51.93 -0.37 0.43 16 39 H 0.10 2.54 5.88 -51.93 -0.31 2.24 16 LS Contribution 311.27 15.07 4.69 4.69 Total: -1.00 -34.10 311.27 -6.99 -41.09 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -4.48 Total: 4.13 kcal Atomic # 6 Polarization: 15.33 SS G_CDS: -1.19 Total: 14.14 kcal Atomic # 7 Polarization: -52.39 SS G_CDS: -0.28 Total: -52.67 kcal Atomic # 8 Polarization: -27.25 SS G_CDS: -0.70 Total: -27.94 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -34.10 -6.99 -41.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480622.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.426 kcal (2) G-P(sol) polarization free energy of solvation -34.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds