Wall clock time and date at job start Tue Mar 31 2020 03:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 117.00149 * 2 1 4 4 O 1.20822 * 120.00051 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00099 * 180.02562 * 3 2 1 6 6 C 1.52996 * 109.47519 * 179.97438 * 5 3 2 7 7 N 1.46488 * 109.47477 * 180.02562 * 6 5 3 8 8 C 1.37101 * 120.00210 * 270.00154 * 7 6 5 9 9 H 1.08005 * 120.00197 * 141.28664 * 8 7 6 10 10 C 1.38951 * 119.99788 * 321.28983 * 8 7 6 11 11 N 1.31408 * 120.00248 * 341.66016 * 10 8 7 12 12 Si 1.86801 * 119.99802 * 161.66486 * 10 8 7 13 13 H 1.48505 * 109.47329 * 59.99582 * 12 10 8 14 14 H 1.48497 * 109.47198 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.47208 * 299.99576 * 12 10 8 16 16 C 1.34774 * 119.99978 * 90.00122 * 7 6 5 17 17 O 1.21288 * 120.00067 * 354.53142 * 16 7 6 18 18 C 1.50708 * 120.00130 * 174.53324 * 16 7 6 19 19 H 1.09000 * 110.36772 * 328.96688 * 18 16 7 20 20 N 1.48558 * 110.40978 * 206.61669 * 18 16 7 21 21 C 1.48568 * 104.22048 * 201.73527 * 20 18 16 22 22 C 1.54383 * 104.59019 * 39.48294 * 21 20 18 23 23 H 1.09005 * 117.59904 * 197.00648 * 22 21 20 24 24 C 1.52998 * 118.13079 * 39.52556 * 22 21 20 25 25 C 1.52996 * 60.54706 * 268.33072 * 24 22 21 26 26 H 1.09001 * 120.22815 * 248.54881 * 25 24 22 27 27 H 1.08998 * 109.47195 * 59.99345 * 1 2 3 28 28 H 1.08992 * 109.47299 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46866 * 299.99565 * 1 2 3 30 30 H 1.09003 * 109.46716 * 60.00175 * 5 3 2 31 31 H 1.09003 * 109.47276 * 300.00374 * 5 3 2 32 32 H 1.09000 * 109.46512 * 60.00078 * 6 5 3 33 33 H 1.09003 * 109.47220 * 300.00492 * 6 5 3 34 34 H 0.96996 * 119.99990 * 185.03558 * 11 10 8 35 35 H 1.00891 * 111.00230 * 321.29112 * 20 18 16 36 36 H 1.08992 * 110.41215 * 158.26022 * 21 20 18 37 37 H 1.09001 * 110.41456 * 280.59072 * 21 20 18 38 38 H 1.09000 * 117.44141 * 15.97415 * 24 22 21 39 39 H 1.09002 * 117.44757 * 160.67857 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0003 2.7420 -0.0011 7 7 5.4632 2.8186 -0.0023 8 6 6.1487 2.8546 1.1845 9 1 7.0803 2.3176 1.2865 10 6 5.6450 3.5819 2.2560 11 7 4.7360 4.5086 2.0518 12 14 6.2602 3.2422 3.9868 13 1 7.7246 3.4813 4.0475 14 1 5.5715 4.1457 4.9431 15 1 5.9739 1.8299 4.3456 16 6 6.1352 2.8538 -1.1700 17 8 5.5381 2.7222 -2.2175 18 6 7.6285 3.0565 -1.1742 19 1 7.9304 3.6706 -0.3258 20 7 8.0625 3.6844 -2.4487 21 6 9.5031 3.3370 -2.5548 22 6 9.5899 1.8801 -2.0514 23 1 10.5723 1.5008 -1.7700 24 6 8.4755 0.9111 -2.4514 25 6 8.3567 1.6956 -1.1433 26 1 8.4210 1.1789 -0.1857 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 3.9557 0.7809 -0.8909 31 1 3.9565 0.7805 0.8891 32 1 3.6109 3.2362 0.8889 33 1 3.6102 3.2360 -0.8910 34 1 4.4377 5.0658 2.7875 35 1 7.5427 3.3136 -3.2299 36 1 9.8344 3.4015 -3.5911 37 1 10.1004 3.9953 -1.9238 38 1 7.8250 1.2060 -3.2748 39 1 8.6877 -0.1556 -2.3800 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001578804844.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:36:16 Heat of formation + Delta-G solvation = -77.158641 kcal Electronic energy + Delta-G solvation = -22964.963117 eV Core-core repulsion = 19488.116963 eV Total energy + Delta-G solvation = -3476.846154 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.13098 -39.90735 -37.85534 -36.14823 -34.92560 -32.08028 -31.83141 -30.86237 -28.41236 -27.34660 -25.09123 -24.51601 -23.18430 -20.75866 -19.99552 -19.78433 -18.87699 -17.44515 -16.97697 -16.28745 -16.17178 -16.03814 -15.64010 -15.05251 -14.62130 -14.07824 -13.69681 -13.51532 -13.29958 -12.98455 -12.69420 -12.20014 -12.11890 -11.98302 -11.89565 -11.73142 -11.32115 -11.23259 -11.15012 -10.98991 -10.74602 -10.53762 -10.47284 -10.08502 -10.00043 -9.91899 -9.58548 -9.16301 -8.40413 -8.32702 -7.58601 -6.42558 -4.17824 2.67838 3.05217 3.08127 3.17600 3.17976 3.70774 3.87985 4.05863 4.52302 4.78455 4.95599 5.03136 5.08995 5.24032 5.28900 5.30984 5.36818 5.42546 5.64062 5.76318 5.83450 5.85290 5.94915 6.06217 6.11399 6.21491 6.26633 6.30997 6.40364 6.56066 6.73544 6.85814 7.10771 7.28833 7.45680 7.77278 7.87032 8.18898 8.29399 8.99857 9.40755 9.84103 10.58736 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.012904 B = 0.006552 C = 0.004909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.273990 B = 4272.716961 C = 5701.873608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.367 6.367 3 C 0.466 3.534 4 O -0.505 6.505 5 C -0.123 4.123 6 C 0.127 3.873 7 N -0.432 5.432 8 C -0.350 4.350 9 H 0.091 0.909 10 C 0.048 3.952 11 N -0.852 5.852 12 Si 0.915 3.085 13 H -0.271 1.271 14 H -0.283 1.283 15 H -0.271 1.271 16 C 0.483 3.517 17 O -0.602 6.602 18 C 0.097 3.903 19 H 0.120 0.880 20 N -0.654 5.654 21 C 0.069 3.931 22 C -0.207 4.207 23 H 0.111 0.889 24 C -0.149 4.149 25 C -0.172 4.172 26 H 0.118 0.882 27 H 0.059 0.941 28 H 0.095 0.905 29 H 0.060 0.940 30 H 0.097 0.903 31 H 0.104 0.896 32 H 0.117 0.883 33 H 0.064 0.936 34 H 0.274 0.726 35 H 0.346 0.654 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.497 -7.746 -2.177 8.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.284 6.284 3 C 0.309 3.691 4 O -0.392 6.392 5 C -0.162 4.162 6 C 0.003 3.997 7 N -0.150 5.150 8 C -0.477 4.477 9 H 0.108 0.892 10 C -0.160 4.160 11 N -0.487 5.487 12 Si 0.741 3.259 13 H -0.196 1.196 14 H -0.208 1.208 15 H -0.197 1.197 16 C 0.272 3.728 17 O -0.487 6.487 18 C -0.016 4.016 19 H 0.138 0.862 20 N -0.284 5.284 21 C -0.061 4.061 22 C -0.227 4.227 23 H 0.129 0.871 24 C -0.186 4.186 25 C -0.193 4.193 26 H 0.136 0.864 27 H 0.078 0.922 28 H 0.113 0.887 29 H 0.078 0.922 30 H 0.115 0.885 31 H 0.122 0.878 32 H 0.135 0.865 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.165 0.835 36 H 0.089 0.911 37 H 0.103 0.897 38 H 0.111 0.889 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.829 -6.636 -2.313 7.261 hybrid contribution 0.112 -1.152 0.945 1.494 sum 1.941 -7.787 -1.367 8.141 Atomic orbital electron populations 1.23163 0.77412 1.02998 1.02337 1.86541 1.22723 1.34481 1.84686 1.24111 0.92432 0.80866 0.71710 1.90649 1.67275 1.36217 1.45050 1.21899 0.85711 1.03467 1.05125 1.21212 0.82290 0.90899 1.05322 1.43288 1.04328 1.62742 1.04633 1.19365 1.08263 1.31905 0.88189 0.89160 1.25473 0.96199 0.93918 1.00386 1.69806 1.29119 1.16581 1.33235 0.86194 0.79156 0.78655 0.81901 1.19594 1.20813 1.19672 1.20180 0.88772 0.79983 0.83883 1.90505 1.70120 1.56005 1.32100 1.22008 0.93176 0.91813 0.94595 0.86245 1.63327 1.02641 1.57566 1.04899 1.22563 0.91227 0.91506 1.00801 1.24056 0.94372 0.97790 1.06439 0.87085 1.22817 1.00356 0.96900 0.98554 1.23814 1.00072 0.99506 0.95871 0.86381 0.92179 0.88651 0.92170 0.88512 0.87801 0.86531 0.91782 0.91560 0.83523 0.91095 0.89742 0.88908 0.88467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.56 101.05 1.07 1.51 16 2 O -0.37 -6.09 10.57 -39.26 -0.41 -6.50 16 3 C 0.47 9.08 7.96 36.01 0.29 9.37 16 4 O -0.51 -11.13 15.73 -18.75 -0.29 -11.43 16 5 C -0.12 -2.47 6.13 -27.89 -0.17 -2.64 16 6 C 0.13 3.04 4.25 -4.05 -0.02 3.03 16 7 N -0.43 -10.47 2.51 -114.82 -0.29 -10.76 16 8 C -0.35 -8.37 8.07 -14.93 -0.12 -8.49 16 9 H 0.09 2.03 6.92 -52.48 -0.36 1.67 16 10 C 0.05 1.17 5.02 -17.47 -0.09 1.08 16 11 N -0.85 -22.22 11.35 55.50 0.63 -21.59 16 12 Si 0.91 18.73 29.59 -169.99 -5.03 13.70 16 13 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 14 H -0.28 -5.88 7.11 56.52 0.40 -5.47 16 15 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 16 C 0.48 11.42 6.91 -10.98 -0.08 11.34 16 17 O -0.60 -15.30 15.60 5.55 0.09 -15.21 16 18 C 0.10 1.95 2.69 -67.22 -0.18 1.77 16 19 H 0.12 2.56 7.17 -51.93 -0.37 2.19 16 20 N -0.65 -12.13 7.25 -103.94 -0.75 -12.88 16 21 C 0.07 1.00 7.37 -2.18 -0.02 0.99 16 22 C -0.21 -2.91 7.17 -89.24 -0.64 -3.55 16 23 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16 24 C -0.15 -2.24 9.86 -26.73 -0.26 -2.50 16 25 C -0.17 -2.92 6.30 -89.24 -0.56 -3.48 16 26 H 0.12 1.96 7.79 -51.93 -0.40 1.55 16 27 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 28 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.06 0.75 8.13 -51.93 -0.42 0.32 16 30 H 0.10 1.90 8.14 -51.93 -0.42 1.48 16 31 H 0.10 1.98 8.14 -51.93 -0.42 1.55 16 32 H 0.12 3.04 5.44 -51.93 -0.28 2.76 16 33 H 0.06 1.66 7.46 -51.93 -0.39 1.27 16 34 H 0.27 6.80 8.32 -40.82 -0.34 6.46 16 35 H 0.35 6.63 6.85 -39.30 -0.27 6.36 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 38 H 0.09 1.51 7.33 -51.93 -0.38 1.13 16 39 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 326.75 15.07 4.92 4.92 Total: -1.00 -29.12 326.75 -7.32 -36.44 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: -5.40 Total: 14.91 kcal Atomic # 6 Polarization: 9.19 SS G_CDS: -0.78 Total: 8.41 kcal Atomic # 7 Polarization: -44.82 SS G_CDS: -0.41 Total: -45.23 kcal Atomic # 8 Polarization: -32.52 SS G_CDS: -0.62 Total: -33.14 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.03 Total: 13.70 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.12 -7.32 -36.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578804844.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.716 kcal (2) G-P(sol) polarization free energy of solvation -29.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds