Wall clock time and date at job start Tue Mar 31 2020 03:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 117.00149 * 2 1 4 4 O 1.20822 * 120.00051 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00099 * 180.02562 * 3 2 1 6 6 C 1.52996 * 109.47519 * 179.97438 * 5 3 2 7 7 N 1.46488 * 109.47477 * 180.02562 * 6 5 3 8 8 C 1.37101 * 120.00210 * 270.00154 * 7 6 5 9 9 H 1.08005 * 120.00197 * 141.28664 * 8 7 6 10 10 C 1.38951 * 119.99788 * 321.28983 * 8 7 6 11 11 N 1.31408 * 120.00248 * 341.66016 * 10 8 7 12 12 Si 1.86801 * 119.99802 * 161.66486 * 10 8 7 13 13 H 1.48505 * 109.47329 * 59.99582 * 12 10 8 14 14 H 1.48497 * 109.47198 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.47208 * 299.99576 * 12 10 8 16 16 C 1.34774 * 119.99978 * 90.00122 * 7 6 5 17 17 O 1.21288 * 120.00067 * 354.53142 * 16 7 6 18 18 C 1.50708 * 120.00130 * 174.53324 * 16 7 6 19 19 H 1.09000 * 110.36772 * 328.96688 * 18 16 7 20 20 N 1.48558 * 110.40978 * 206.61669 * 18 16 7 21 21 C 1.48568 * 104.22048 * 201.73527 * 20 18 16 22 22 C 1.54383 * 104.59019 * 39.48294 * 21 20 18 23 23 H 1.09005 * 117.59904 * 197.00648 * 22 21 20 24 24 C 1.52998 * 118.13079 * 39.52556 * 22 21 20 25 25 C 1.52996 * 60.54706 * 268.33072 * 24 22 21 26 26 H 1.09001 * 120.22815 * 248.54881 * 25 24 22 27 27 H 1.08998 * 109.47195 * 59.99345 * 1 2 3 28 28 H 1.08992 * 109.47299 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46866 * 299.99565 * 1 2 3 30 30 H 1.09003 * 109.46716 * 60.00175 * 5 3 2 31 31 H 1.09003 * 109.47276 * 300.00374 * 5 3 2 32 32 H 1.09000 * 109.46512 * 60.00078 * 6 5 3 33 33 H 1.09003 * 109.47220 * 300.00492 * 6 5 3 34 34 H 0.96996 * 119.99990 * 185.03558 * 11 10 8 35 35 H 1.00891 * 111.00230 * 321.29112 * 20 18 16 36 36 H 1.08992 * 110.41215 * 158.26022 * 21 20 18 37 37 H 1.09001 * 110.41456 * 280.59072 * 21 20 18 38 38 H 1.09000 * 117.44141 * 15.97415 * 24 22 21 39 39 H 1.09002 * 117.44757 * 160.67857 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0003 2.7420 -0.0011 7 7 5.4632 2.8186 -0.0023 8 6 6.1487 2.8546 1.1845 9 1 7.0803 2.3176 1.2865 10 6 5.6450 3.5819 2.2560 11 7 4.7360 4.5086 2.0518 12 14 6.2602 3.2422 3.9868 13 1 7.7246 3.4813 4.0475 14 1 5.5715 4.1457 4.9431 15 1 5.9739 1.8299 4.3456 16 6 6.1352 2.8538 -1.1700 17 8 5.5381 2.7222 -2.2175 18 6 7.6285 3.0565 -1.1742 19 1 7.9304 3.6706 -0.3258 20 7 8.0625 3.6844 -2.4487 21 6 9.5031 3.3370 -2.5548 22 6 9.5899 1.8801 -2.0514 23 1 10.5723 1.5008 -1.7700 24 6 8.4755 0.9111 -2.4514 25 6 8.3567 1.6956 -1.1433 26 1 8.4210 1.1789 -0.1857 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 3.9557 0.7809 -0.8909 31 1 3.9565 0.7805 0.8891 32 1 3.6109 3.2362 0.8889 33 1 3.6102 3.2360 -0.8910 34 1 4.4377 5.0658 2.7875 35 1 7.5427 3.3136 -3.2299 36 1 9.8344 3.4015 -3.5911 37 1 10.1004 3.9953 -1.9238 38 1 7.8250 1.2060 -3.2748 39 1 8.6877 -0.1556 -2.3800 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001578804844.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:36:15 Heat of formation + Delta-G solvation = -96.259353 kcal Electronic energy + Delta-G solvation = -22965.791386 eV Core-core repulsion = 19488.116963 eV Total energy + Delta-G solvation = -3477.674423 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.67333 -41.36818 -39.52067 -37.64928 -36.79190 -33.86575 -33.24259 -32.60652 -29.82177 -28.58798 -26.93969 -25.90748 -24.75621 -22.26601 -21.59831 -20.95805 -20.61448 -19.06558 -18.56489 -17.89649 -17.65043 -17.52695 -17.09900 -16.68961 -16.30703 -15.62294 -15.38583 -15.03779 -14.65619 -14.44482 -14.16949 -13.79616 -13.68490 -13.58295 -13.16490 -13.10784 -12.88131 -12.74462 -12.66835 -12.56569 -12.38982 -12.12308 -11.95858 -11.80923 -11.63024 -11.18502 -11.06833 -10.83950 -10.13630 -9.72666 -9.49078 -8.28822 -6.10048 1.10770 1.44244 1.50306 1.58863 1.64950 1.95590 2.33215 2.63981 2.96165 3.04948 3.41525 3.74637 3.79186 3.83372 4.05478 4.11523 4.19557 4.28229 4.29782 4.30193 4.46619 4.57021 4.58513 4.67791 4.74447 4.86926 4.90733 4.95534 5.00955 5.07875 5.24363 5.24836 5.37672 5.52713 5.75251 5.97306 6.33928 6.40653 6.67811 7.11604 7.54319 7.97596 8.73483 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.012904 B = 0.006552 C = 0.004909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.273990 B = 4272.716961 C = 5701.873608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.362 6.362 3 C 0.473 3.527 4 O -0.537 6.537 5 C -0.112 4.112 6 C 0.132 3.868 7 N -0.443 5.443 8 C -0.355 4.355 9 H 0.105 0.895 10 C 0.004 3.996 11 N -0.894 5.894 12 Si 0.982 3.018 13 H -0.259 1.259 14 H -0.290 1.290 15 H -0.261 1.261 16 C 0.472 3.528 17 O -0.628 6.628 18 C 0.102 3.898 19 H 0.101 0.899 20 N -0.672 5.672 21 C 0.065 3.935 22 C -0.174 4.174 23 H 0.144 0.856 24 C -0.146 4.146 25 C -0.199 4.199 26 H 0.122 0.878 27 H 0.060 0.940 28 H 0.139 0.861 29 H 0.060 0.940 30 H 0.101 0.899 31 H 0.118 0.882 32 H 0.095 0.905 33 H 0.031 0.969 34 H 0.272 0.728 35 H 0.340 0.660 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.075 0.925 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.290 -9.832 -1.698 10.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.279 6.279 3 C 0.317 3.683 4 O -0.427 6.427 5 C -0.150 4.150 6 C 0.008 3.992 7 N -0.160 5.160 8 C -0.482 4.482 9 H 0.123 0.877 10 C -0.200 4.200 11 N -0.530 5.530 12 Si 0.806 3.194 13 H -0.183 1.183 14 H -0.215 1.215 15 H -0.186 1.186 16 C 0.261 3.739 17 O -0.516 6.516 18 C -0.010 4.010 19 H 0.119 0.881 20 N -0.302 5.302 21 C -0.064 4.064 22 C -0.193 4.193 23 H 0.162 0.838 24 C -0.182 4.182 25 C -0.219 4.219 26 H 0.140 0.860 27 H 0.078 0.922 28 H 0.157 0.843 29 H 0.079 0.921 30 H 0.119 0.881 31 H 0.136 0.864 32 H 0.113 0.887 33 H 0.050 0.950 34 H 0.082 0.918 35 H 0.158 0.842 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.093 0.907 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.642 -8.756 -1.837 9.659 hybrid contribution -0.516 -0.492 0.702 1.001 sum 3.126 -9.248 -1.135 9.828 Atomic orbital electron populations 1.23588 0.74749 1.05908 1.02452 1.86507 1.25191 1.32328 1.83859 1.23852 0.92123 0.81289 0.71028 1.90639 1.67848 1.37500 1.46726 1.21641 0.86738 1.00716 1.05928 1.20953 0.82660 0.93091 1.02518 1.43508 1.04336 1.62911 1.05245 1.19741 1.08650 1.31748 0.88038 0.87708 1.26339 0.96211 0.93318 1.04087 1.69954 1.30898 1.17941 1.34222 0.85150 0.78971 0.78586 0.76740 1.18346 1.21547 1.18598 1.20905 0.90518 0.79167 0.83262 1.90469 1.71143 1.57123 1.32870 1.21799 0.90641 0.93833 0.94774 0.88115 1.63312 1.04921 1.58012 1.03905 1.22754 0.88759 0.92177 1.02720 1.24156 0.94763 0.97033 1.03344 0.83833 1.22898 1.00454 0.98403 0.96490 1.23715 1.02308 0.98741 0.97144 0.86050 0.92155 0.84317 0.92099 0.88053 0.86434 0.88723 0.95001 0.91804 0.84196 0.88670 0.88739 0.90687 0.85985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.56 113.37 1.20 1.80 16 2 O -0.36 -11.58 10.57 -51.42 -0.54 -12.13 16 3 C 0.47 18.61 7.96 71.24 0.57 19.18 16 4 O -0.54 -24.40 15.73 21.98 0.35 -24.06 16 5 C -0.11 -4.56 6.13 29.85 0.18 -4.38 16 6 C 0.13 6.64 4.25 86.38 0.37 7.01 16 7 N -0.44 -22.09 2.51 -635.56 -1.60 -23.69 16 8 C -0.35 -17.12 8.07 84.04 0.68 -16.44 16 9 H 0.11 4.66 6.92 -2.91 -0.02 4.64 16 10 C 0.00 0.20 5.02 84.93 0.43 0.63 16 11 N -0.89 -48.12 11.35 21.66 0.25 -47.88 16 12 Si 0.98 38.09 29.59 68.60 2.03 40.12 16 13 H -0.26 -9.50 7.11 99.48 0.71 -8.80 16 14 H -0.29 -11.48 7.11 99.48 0.71 -10.77 16 15 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 16 C 0.47 22.93 6.91 87.66 0.61 23.53 16 17 O -0.63 -33.16 15.60 -3.05 -0.05 -33.21 16 18 C 0.10 4.13 2.69 44.32 0.12 4.25 16 19 H 0.10 4.39 7.17 -2.39 -0.02 4.37 16 20 N -0.67 -24.69 7.25 -482.77 -3.50 -28.19 16 21 C 0.06 1.73 7.37 86.45 0.64 2.36 16 22 C -0.17 -4.30 7.17 -9.90 -0.07 -4.37 16 23 H 0.14 2.72 8.14 -2.38 -0.02 2.70 16 24 C -0.15 -4.03 9.86 30.59 0.30 -3.73 16 25 C -0.20 -6.42 6.30 -9.90 -0.06 -6.48 16 26 H 0.12 3.80 7.79 -2.39 -0.02 3.78 16 27 H 0.06 1.42 8.13 -2.39 -0.02 1.40 16 28 H 0.14 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.06 1.43 8.13 -2.38 -0.02 1.41 16 30 H 0.10 4.04 8.14 -2.39 -0.02 4.02 16 31 H 0.12 4.45 8.14 -2.39 -0.02 4.43 16 32 H 0.09 5.20 5.44 -2.39 -0.01 5.19 16 33 H 0.03 1.75 7.46 -2.39 -0.02 1.73 16 34 H 0.27 13.99 8.32 -92.71 -0.77 13.21 16 35 H 0.34 13.13 6.85 -89.70 -0.61 12.51 16 36 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.07 2.37 7.33 -2.39 -0.02 2.35 16 39 H 0.12 2.76 8.14 -2.39 -0.02 2.74 16 Total: -1.00 -65.59 326.75 2.34 -63.25 By element: Atomic # 1 Polarization: 41.97 SS G_CDS: 0.46 Total: 42.42 kcal Atomic # 6 Polarization: 18.41 SS G_CDS: 4.95 Total: 23.36 kcal Atomic # 7 Polarization: -94.91 SS G_CDS: -4.85 Total: -99.76 kcal Atomic # 8 Polarization: -69.15 SS G_CDS: -0.25 Total: -69.39 kcal Atomic # 14 Polarization: 38.09 SS G_CDS: 2.03 Total: 40.12 kcal Total: -65.59 2.34 -63.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578804844.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.005 kcal (2) G-P(sol) polarization free energy of solvation -65.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds