Wall clock time and date at job start Tue Mar 31 2020 02:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86794 * 119.99896 * 2 1 4 4 H 1.48499 * 109.47255 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46979 * 300.00036 * 3 2 1 6 6 H 1.48494 * 109.47401 * 59.99838 * 3 2 1 7 7 C 1.38812 * 120.00348 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00502 * 206.64734 * 7 2 1 9 9 N 1.36942 * 119.99702 * 26.64365 * 7 2 1 10 10 C 1.43468 * 118.93747 * 197.93690 * 9 7 2 11 11 C 1.53795 * 107.96100 * 273.62948 * 10 9 7 12 12 C 1.47600 * 111.84321 * 281.54533 * 11 10 9 13 13 N 1.48213 * 110.04001 * 58.43495 * 12 11 10 14 14 C 1.34781 * 119.97101 * 102.55421 * 13 12 11 15 15 O 1.21275 * 119.99633 * 359.71554 * 14 13 12 16 16 C 1.50704 * 119.99784 * 179.72369 * 14 13 12 17 17 H 1.08997 * 115.55987 * 321.75696 * 16 14 13 18 18 C 1.52999 * 117.49458 * 176.06842 * 16 14 13 19 19 C 1.53003 * 117.49758 * 107.44724 * 16 14 13 20 20 H 1.09003 * 117.49390 * 214.97314 * 19 16 14 21 21 C 1.50704 * 117.51764 * 0.02562 * 19 16 14 22 22 O 1.20821 * 120.00093 * 335.81521 * 21 19 16 23 23 O 1.34228 * 119.99500 * 155.81559 * 21 19 16 24 24 C 1.43626 * 120.06155 * 282.27203 * 13 12 11 25 25 C 1.48853 * 118.94276 * 17.95628 * 9 7 2 26 26 H 0.96995 * 120.00633 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.76375 * 33.25027 * 10 9 7 28 28 H 1.09003 * 109.76156 * 153.96427 * 10 9 7 29 29 H 1.09004 * 109.00039 * 42.27337 * 11 10 9 30 30 H 1.09001 * 109.00676 * 161.13506 * 11 10 9 31 31 H 1.08998 * 109.44936 * 298.27696 * 12 11 10 32 32 H 1.09000 * 109.50955 * 178.62909 * 12 11 10 33 33 H 1.08996 * 117.49859 * 145.02333 * 18 16 14 34 34 H 1.08997 * 117.51886 * 359.97438 * 18 16 14 35 35 H 0.96697 * 116.99863 * 180.02562 * 23 21 19 36 36 H 1.08996 * 108.87400 * 211.70281 * 24 13 12 37 37 H 1.09004 * 108.87149 * 330.13663 * 24 13 12 38 38 H 1.09001 * 109.47973 * 20.63861 * 25 9 7 39 39 H 1.09002 * 109.49326 * 260.61000 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3964 -1.2126 6 1 1.8914 2.3964 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0043 -1.2520 0.4189 9 7 1.4347 -2.3248 -0.5329 10 6 1.9723 -3.6099 -0.1896 11 6 3.1219 -3.9186 -1.1635 12 6 2.6227 -4.3757 -2.4752 13 7 1.7424 -3.3430 -3.0715 14 6 2.2084 -2.5469 -4.0542 15 8 3.3491 -2.6723 -4.4465 16 6 1.3119 -1.5009 -4.6653 17 1 0.2714 -1.7951 -4.8022 18 6 1.9259 -0.5681 -5.7111 19 6 1.5924 -0.0382 -4.3150 20 1 0.7362 0.6300 -4.2216 21 6 2.7442 0.2468 -3.3859 22 8 3.1247 -0.6038 -2.6168 23 8 3.3473 1.4457 -3.4128 24 6 0.3914 -3.1940 -2.6074 25 6 0.2716 -2.1726 -1.4493 26 1 -0.4851 0.8400 -0.0004 27 1 2.3503 -3.5902 0.8326 28 1 1.1966 -4.3703 -0.2810 29 1 3.7199 -3.0181 -1.3035 30 1 3.7506 -4.6989 -0.7347 31 1 2.0591 -5.2998 -2.3471 32 1 3.4655 -4.5597 -3.1414 33 1 1.2892 -0.2484 -6.5360 34 1 2.9782 -0.7104 -5.9570 35 1 4.0816 1.5816 -2.7986 36 1 -0.2318 -2.8609 -3.4373 37 1 0.0282 -4.1622 -2.2626 38 1 0.2594 -1.1615 -1.8563 39 1 -0.6515 -2.3540 -0.8988 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601074851.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:15:41 Heat of formation + Delta-G solvation = -49.587152 kcal Electronic energy + Delta-G solvation = -25029.858432 eV Core-core repulsion = 21554.207867 eV Total energy + Delta-G solvation = -3475.650564 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.37282 -39.03383 -37.17871 -35.85848 -35.15177 -34.10162 -32.53502 -30.74525 -27.56596 -25.97716 -25.04273 -23.76147 -23.53457 -21.26238 -20.49805 -19.63971 -18.24807 -17.67845 -16.98392 -16.35934 -15.96623 -15.46461 -15.21687 -14.75423 -14.17260 -14.09777 -13.81291 -13.58300 -13.05470 -13.01487 -12.52848 -12.26283 -12.07762 -11.85879 -11.70139 -11.23439 -11.00521 -10.90517 -10.66590 -10.54566 -10.46484 -10.33747 -10.14385 -10.06635 -9.76169 -9.69575 -9.64321 -9.20834 -8.26064 -7.91141 -6.67546 -5.71401 -2.94807 2.82892 2.97894 3.34088 3.38214 3.48454 3.49810 3.66525 4.11798 4.61554 4.79330 4.86480 5.01866 5.19248 5.34999 5.51660 5.60728 5.65068 5.75206 5.80586 5.90107 5.98439 6.01006 6.11394 6.17726 6.21911 6.38248 6.52627 6.64696 6.89775 7.02221 7.11171 7.22653 7.47526 7.50967 7.93793 8.10054 8.49478 8.57129 8.81336 9.30030 10.01579 10.43594 11.38815 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.014451 B = 0.012087 C = 0.008338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.135705 B = 2316.024006 C = 3357.123088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.000 4.000 3 Si 0.864 3.136 4 H -0.280 1.280 5 H -0.284 1.284 6 H -0.298 1.298 7 C -0.206 4.206 8 H 0.060 0.940 9 N -0.582 5.582 10 C 0.164 3.836 11 C -0.169 4.169 12 C 0.135 3.865 13 N -0.574 5.574 14 C 0.563 3.437 15 O -0.556 6.556 16 C -0.157 4.157 17 H 0.133 0.867 18 C -0.130 4.130 19 C -0.122 4.122 20 H 0.140 0.860 21 C 0.478 3.522 22 O -0.432 6.432 23 O -0.524 6.524 24 C 0.082 3.918 25 C 0.166 3.834 26 H 0.248 0.752 27 H 0.043 0.957 28 H 0.031 0.969 29 H 0.077 0.923 30 H 0.049 0.951 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.404 0.596 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.077 0.923 39 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.093 -3.762 -9.527 10.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.196 4.196 3 Si 0.695 3.305 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.226 1.226 7 C -0.336 4.336 8 H 0.078 0.922 9 N -0.302 5.302 10 C 0.036 3.964 11 C -0.210 4.210 12 C 0.013 3.987 13 N -0.304 5.304 14 C 0.351 3.649 15 O -0.435 6.435 16 C -0.178 4.178 17 H 0.150 0.850 18 C -0.167 4.167 19 C -0.142 4.142 20 H 0.158 0.842 21 C 0.316 3.684 22 O -0.313 6.313 23 O -0.337 6.337 24 C -0.044 4.044 25 C 0.040 3.960 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.049 0.951 29 H 0.095 0.905 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.131 0.869 34 H 0.129 0.871 35 H 0.261 0.739 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.095 0.905 39 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 0.168 -4.080 -9.742 10.563 hybrid contribution 0.694 1.269 0.631 1.578 sum 0.862 -2.811 -9.111 9.573 Atomic orbital electron populations 1.70155 1.04936 1.24749 1.55600 1.24507 0.94750 0.97418 1.02914 0.86789 0.80301 0.85896 0.77534 1.20498 1.21034 1.22634 1.18995 0.96365 0.86736 1.31530 0.92208 1.43587 1.35014 1.01098 1.50541 1.20244 0.92952 0.87863 0.95357 1.21948 1.01179 1.01464 0.96390 1.20585 0.93955 0.88806 0.95322 1.47093 1.13372 1.34892 1.35079 1.19018 0.86521 0.80335 0.79068 1.90595 1.18808 1.70264 1.63875 1.22380 1.01485 0.90368 1.03542 0.84957 1.23072 1.03462 0.99378 0.90792 1.21519 0.98351 0.96802 0.97517 0.84223 1.21990 0.83278 0.80067 0.83049 1.90956 1.60639 1.45297 1.34409 1.84420 1.49435 1.37281 1.62589 1.22156 0.82176 1.01172 0.98889 1.21849 0.89339 0.97211 0.87650 0.94235 0.93870 0.95070 0.90475 0.93292 0.92512 0.90774 0.86941 0.87141 0.73855 0.91885 0.92302 0.90470 0.94706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.59 11.26 55.49 0.62 -24.97 16 2 C 0.00 0.00 4.67 -17.43 -0.08 -0.08 16 3 Si 0.86 21.73 28.40 -169.99 -4.83 16.90 16 4 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 5 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 7 C -0.21 -5.59 7.68 -15.06 -0.12 -5.71 16 8 H 0.06 1.71 7.96 -52.49 -0.42 1.29 16 9 N -0.58 -13.92 2.55 -171.99 -0.44 -14.36 16 10 C 0.16 3.40 5.63 -5.23 -0.03 3.37 16 11 C -0.17 -3.22 5.65 -28.92 -0.16 -3.39 16 12 C 0.13 2.37 5.74 -5.71 -0.03 2.34 16 13 N -0.57 -10.62 2.45 -176.41 -0.43 -11.05 16 14 C 0.56 10.82 5.08 -10.98 -0.06 10.77 16 15 O -0.56 -12.23 15.28 -8.00 -0.12 -12.36 16 16 C -0.16 -2.47 5.18 -91.77 -0.48 -2.95 16 17 H 0.13 1.70 6.59 -51.93 -0.34 1.36 16 18 C -0.13 -1.75 9.75 -26.73 -0.26 -2.01 16 19 C -0.12 -2.02 6.29 -91.77 -0.58 -2.60 16 20 H 0.14 2.08 8.14 -51.93 -0.42 1.66 16 21 C 0.48 9.62 7.21 36.01 0.26 9.88 16 22 O -0.43 -10.07 13.11 -23.84 -0.31 -10.38 16 23 O -0.52 -9.48 13.25 -39.25 -0.52 -10.00 16 24 C 0.08 1.42 5.08 -4.58 -0.02 1.40 16 25 C 0.17 3.66 5.29 -1.75 -0.01 3.66 16 26 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 27 H 0.04 0.92 8.02 -51.93 -0.42 0.50 16 28 H 0.03 0.59 7.59 -51.93 -0.39 0.19 16 29 H 0.08 1.80 7.91 -51.93 -0.41 1.39 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.85 8.05 -51.93 -0.42 0.43 16 32 H 0.07 1.35 7.13 -51.93 -0.37 0.98 16 33 H 0.11 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.11 1.65 7.67 -51.93 -0.40 1.25 16 35 H 0.40 6.29 9.10 45.56 0.41 6.71 16 36 H 0.06 0.94 6.01 -51.93 -0.31 0.62 16 37 H 0.06 0.93 7.73 -51.93 -0.40 0.53 16 38 H 0.08 1.91 6.35 -51.93 -0.33 1.58 16 39 H 0.04 0.83 8.10 -51.93 -0.42 0.41 16 LS Contribution 311.81 15.07 4.70 4.70 Total: -1.00 -33.37 311.81 -7.51 -40.88 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -4.62 Total: 5.98 kcal Atomic # 6 Polarization: 16.23 SS G_CDS: -1.56 Total: 14.67 kcal Atomic # 7 Polarization: -50.13 SS G_CDS: -0.25 Total: -50.38 kcal Atomic # 8 Polarization: -31.79 SS G_CDS: -0.95 Total: -32.74 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.83 Total: 16.90 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -33.37 -7.51 -40.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601074851.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.704 kcal (2) G-P(sol) polarization free energy of solvation -33.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds