Wall clock time and date at job start Tue Mar 31 2020 02:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86794 * 119.99896 * 2 1 4 4 H 1.48499 * 109.47255 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46979 * 300.00036 * 3 2 1 6 6 H 1.48494 * 109.47401 * 59.99838 * 3 2 1 7 7 C 1.38812 * 120.00348 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00502 * 206.64734 * 7 2 1 9 9 N 1.36942 * 119.99702 * 26.64365 * 7 2 1 10 10 C 1.43468 * 118.93747 * 197.93690 * 9 7 2 11 11 C 1.53795 * 107.96100 * 273.62948 * 10 9 7 12 12 C 1.47600 * 111.84321 * 281.54533 * 11 10 9 13 13 N 1.48213 * 110.04001 * 58.43495 * 12 11 10 14 14 C 1.34781 * 119.97101 * 102.55421 * 13 12 11 15 15 O 1.21275 * 119.99633 * 359.71554 * 14 13 12 16 16 C 1.50704 * 119.99784 * 179.72369 * 14 13 12 17 17 H 1.08997 * 115.55987 * 321.75696 * 16 14 13 18 18 C 1.52999 * 117.49458 * 176.06842 * 16 14 13 19 19 C 1.53003 * 117.49758 * 107.44724 * 16 14 13 20 20 H 1.09003 * 117.49390 * 214.97314 * 19 16 14 21 21 C 1.50704 * 117.51764 * 0.02562 * 19 16 14 22 22 O 1.20821 * 120.00093 * 335.81521 * 21 19 16 23 23 O 1.34228 * 119.99500 * 155.81559 * 21 19 16 24 24 C 1.43626 * 120.06155 * 282.27203 * 13 12 11 25 25 C 1.48853 * 118.94276 * 17.95628 * 9 7 2 26 26 H 0.96995 * 120.00633 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.76375 * 33.25027 * 10 9 7 28 28 H 1.09003 * 109.76156 * 153.96427 * 10 9 7 29 29 H 1.09004 * 109.00039 * 42.27337 * 11 10 9 30 30 H 1.09001 * 109.00676 * 161.13506 * 11 10 9 31 31 H 1.08998 * 109.44936 * 298.27696 * 12 11 10 32 32 H 1.09000 * 109.50955 * 178.62909 * 12 11 10 33 33 H 1.08996 * 117.49859 * 145.02333 * 18 16 14 34 34 H 1.08997 * 117.51886 * 359.97438 * 18 16 14 35 35 H 0.96697 * 116.99863 * 180.02562 * 23 21 19 36 36 H 1.08996 * 108.87400 * 211.70281 * 24 13 12 37 37 H 1.09004 * 108.87149 * 330.13663 * 24 13 12 38 38 H 1.09001 * 109.47973 * 20.63861 * 25 9 7 39 39 H 1.09002 * 109.49326 * 260.61000 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3964 -1.2126 6 1 1.8914 2.3964 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0043 -1.2520 0.4189 9 7 1.4347 -2.3248 -0.5329 10 6 1.9723 -3.6099 -0.1896 11 6 3.1219 -3.9186 -1.1635 12 6 2.6227 -4.3757 -2.4752 13 7 1.7424 -3.3430 -3.0715 14 6 2.2084 -2.5469 -4.0542 15 8 3.3491 -2.6723 -4.4465 16 6 1.3119 -1.5009 -4.6653 17 1 0.2714 -1.7951 -4.8022 18 6 1.9259 -0.5681 -5.7111 19 6 1.5924 -0.0382 -4.3150 20 1 0.7362 0.6300 -4.2216 21 6 2.7442 0.2468 -3.3859 22 8 3.1247 -0.6038 -2.6168 23 8 3.3473 1.4457 -3.4128 24 6 0.3914 -3.1940 -2.6074 25 6 0.2716 -2.1726 -1.4493 26 1 -0.4851 0.8400 -0.0004 27 1 2.3503 -3.5902 0.8326 28 1 1.1966 -4.3703 -0.2810 29 1 3.7199 -3.0181 -1.3035 30 1 3.7506 -4.6989 -0.7347 31 1 2.0591 -5.2998 -2.3471 32 1 3.4655 -4.5597 -3.1414 33 1 1.2892 -0.2484 -6.5360 34 1 2.9782 -0.7104 -5.9570 35 1 4.0816 1.5816 -2.7986 36 1 -0.2318 -2.8609 -3.4373 37 1 0.0282 -4.1622 -2.2626 38 1 0.2594 -1.1615 -1.8563 39 1 -0.6515 -2.3540 -0.8988 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601074851.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:15:40 Heat of formation + Delta-G solvation = -72.273030 kcal Electronic energy + Delta-G solvation = -25030.842165 eV Core-core repulsion = 21554.207867 eV Total energy + Delta-G solvation = -3476.634298 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.79151 -40.54434 -38.73177 -37.28300 -36.65480 -35.81997 -34.17666 -32.62123 -29.22980 -27.56845 -26.51957 -25.39437 -25.07506 -22.64745 -21.89249 -21.37957 -19.65052 -19.19003 -18.57119 -18.11257 -17.46529 -16.95631 -16.81693 -16.36986 -15.87698 -15.58436 -15.41047 -15.28326 -14.63958 -14.54236 -14.13272 -13.80371 -13.62692 -13.35449 -13.10393 -13.03181 -12.75605 -12.48623 -12.46414 -12.28293 -11.98894 -11.81993 -11.75282 -11.56326 -11.53424 -11.38626 -11.26317 -10.69303 -10.28759 -9.41328 -8.62574 -7.79750 -5.02879 1.30611 1.36444 1.40493 1.47486 1.57653 2.01529 2.33799 2.56838 2.86196 3.31564 3.55020 3.69241 3.74330 3.81114 4.06843 4.20911 4.31342 4.37463 4.46024 4.54260 4.65078 4.66787 4.79520 4.82269 4.87260 4.96323 5.04308 5.10829 5.27147 5.38613 5.55775 5.65858 5.70602 5.80892 5.91960 6.44737 6.67932 7.08641 7.27517 7.39036 8.06945 8.41480 9.27258 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.014451 B = 0.012087 C = 0.008338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.135705 B = 2316.024006 C = 3357.123088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.033 4.033 3 Si 0.903 3.097 4 H -0.284 1.284 5 H -0.275 1.275 6 H -0.309 1.309 7 C -0.199 4.199 8 H 0.033 0.967 9 N -0.593 5.593 10 C 0.160 3.840 11 C -0.152 4.152 12 C 0.132 3.868 13 N -0.578 5.578 14 C 0.553 3.447 15 O -0.593 6.593 16 C -0.165 4.165 17 H 0.168 0.832 18 C -0.097 4.097 19 C -0.143 4.143 20 H 0.158 0.842 21 C 0.468 3.532 22 O -0.474 6.474 23 O -0.522 6.522 24 C 0.090 3.910 25 C 0.172 3.828 26 H 0.244 0.756 27 H 0.030 0.970 28 H 0.059 0.941 29 H 0.026 0.974 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.065 0.935 33 H 0.161 0.839 34 H 0.092 0.908 35 H 0.410 0.590 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.050 0.950 39 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.446 -4.752 -11.400 12.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.227 4.227 3 Si 0.735 3.265 4 H -0.210 1.210 5 H -0.201 1.201 6 H -0.238 1.238 7 C -0.330 4.330 8 H 0.051 0.949 9 N -0.314 5.314 10 C 0.033 3.967 11 C -0.193 4.193 12 C 0.010 3.990 13 N -0.307 5.307 14 C 0.342 3.658 15 O -0.475 6.475 16 C -0.186 4.186 17 H 0.185 0.815 18 C -0.134 4.134 19 C -0.163 4.163 20 H 0.176 0.824 21 C 0.308 3.692 22 O -0.358 6.358 23 O -0.336 6.336 24 C -0.035 4.035 25 C 0.046 3.954 26 H 0.054 0.946 27 H 0.048 0.952 28 H 0.078 0.922 29 H 0.045 0.955 30 H 0.093 0.907 31 H 0.114 0.886 32 H 0.083 0.917 33 H 0.179 0.821 34 H 0.111 0.889 35 H 0.269 0.731 36 H 0.115 0.885 37 H 0.104 0.896 38 H 0.068 0.932 39 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -1.183 -5.077 -11.628 12.743 hybrid contribution 1.221 1.552 1.269 2.348 sum 0.039 -3.525 -10.359 10.942 Atomic orbital electron populations 1.70221 1.05396 1.24686 1.57154 1.24785 0.95213 0.98781 1.03893 0.86189 0.79253 0.83894 0.77198 1.21004 1.20093 1.23761 1.18882 0.95101 0.88273 1.30716 0.94907 1.43780 1.35342 1.01280 1.50997 1.20389 0.94001 0.87269 0.95044 1.21722 1.00181 1.00023 0.97339 1.20666 0.94431 0.90080 0.93788 1.47244 1.13835 1.34877 1.34760 1.19663 0.86523 0.80586 0.78987 1.90569 1.20558 1.71265 1.65093 1.22558 1.02759 0.88901 1.04333 0.81509 1.23234 1.03321 0.96400 0.90477 1.21704 0.97725 0.97789 0.99041 0.82444 1.22871 0.83695 0.79702 0.82950 1.90943 1.62186 1.46407 1.36292 1.84419 1.49672 1.36761 1.62702 1.22052 0.82238 1.01036 0.98175 1.21715 0.87688 0.97456 0.88533 0.94632 0.95175 0.92250 0.95506 0.90672 0.88645 0.91667 0.82087 0.88948 0.73100 0.88548 0.89643 0.93186 0.96563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.62 11.26 21.65 0.24 -52.38 16 2 C -0.03 -1.82 4.67 84.86 0.40 -1.42 16 3 Si 0.90 45.54 28.40 68.60 1.95 47.49 16 4 H -0.28 -14.35 7.11 99.48 0.71 -13.65 16 5 H -0.27 -13.30 7.11 99.48 0.71 -12.59 16 6 H -0.31 -15.98 7.11 99.48 0.71 -15.27 16 7 C -0.20 -10.99 7.68 84.03 0.65 -10.35 16 8 H 0.03 1.96 7.96 -2.91 -0.02 1.94 16 9 N -0.59 -28.32 2.55 -698.06 -1.78 -30.10 16 10 C 0.16 6.47 5.63 87.21 0.49 6.96 16 11 C -0.15 -5.68 5.65 29.17 0.16 -5.51 16 12 C 0.13 4.35 5.74 84.36 0.48 4.83 16 13 N -0.58 -20.09 2.45 -830.41 -2.03 -22.12 16 14 C 0.55 20.37 5.08 87.66 0.45 20.82 16 15 O -0.59 -25.89 15.28 9.95 0.15 -25.74 16 16 C -0.17 -4.71 5.18 -11.54 -0.06 -4.77 16 17 H 0.17 3.49 6.59 -2.39 -0.02 3.48 16 18 C -0.10 -2.31 9.75 30.60 0.30 -2.01 16 19 C -0.14 -4.44 6.29 -11.54 -0.07 -4.51 16 20 H 0.16 4.27 8.14 -2.39 -0.02 4.25 16 21 C 0.47 18.70 7.21 71.24 0.51 19.22 16 22 O -0.47 -22.52 13.11 26.85 0.35 -22.17 16 23 O -0.52 -18.78 13.25 -51.40 -0.68 -19.46 16 24 C 0.09 2.84 5.08 87.55 0.44 3.29 16 25 C 0.17 7.40 5.29 86.56 0.46 7.86 16 26 H 0.24 13.63 8.31 -92.71 -0.77 12.86 16 27 H 0.03 1.27 8.02 -2.39 -0.02 1.25 16 28 H 0.06 2.07 7.59 -2.39 -0.02 2.05 16 29 H 0.03 1.27 7.91 -2.38 -0.02 1.25 16 30 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.10 2.44 8.05 -2.39 -0.02 2.42 16 32 H 0.06 2.29 7.13 -2.39 -0.02 2.27 16 33 H 0.16 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.09 2.59 7.67 -2.39 -0.02 2.57 16 35 H 0.41 12.99 9.10 -74.06 -0.67 12.31 16 36 H 0.10 2.43 6.01 -2.39 -0.01 2.41 16 37 H 0.09 2.29 7.73 -2.38 -0.02 2.27 16 38 H 0.05 2.43 6.35 -2.39 -0.02 2.42 16 39 H 0.02 0.76 8.10 -2.39 -0.02 0.74 16 Total: -1.00 -75.31 311.81 2.81 -72.50 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: 0.40 Total: 17.57 kcal Atomic # 6 Polarization: 30.20 SS G_CDS: 4.21 Total: 34.41 kcal Atomic # 7 Polarization: -101.03 SS G_CDS: -3.57 Total: -104.60 kcal Atomic # 8 Polarization: -67.20 SS G_CDS: -0.18 Total: -67.38 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.95 Total: 47.49 kcal Total: -75.31 2.81 -72.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601074851.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.227 kcal (2) G-P(sol) polarization free energy of solvation -75.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds