Wall clock time and date at job start Tue Mar 31 2020 02:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86799 * 120.00024 * 2 1 4 4 H 1.48502 * 109.46864 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.46915 * 119.99909 * 3 2 1 6 6 H 1.48497 * 109.47400 * 240.00148 * 3 2 1 7 7 C 1.37881 * 119.99735 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99828 * 341.36106 * 7 2 1 9 9 C 1.50693 * 119.99803 * 161.37015 * 7 2 1 10 10 O 1.42902 * 110.63915 * 297.89680 * 9 7 2 11 11 C 1.55162 * 110.72411 * 61.23160 * 9 7 2 12 12 C 1.54908 * 101.58221 * 153.86646 * 11 9 7 13 13 N 1.47426 * 104.83038 * 322.99214 * 12 11 9 14 14 C 1.34783 * 125.64595 * 204.16034 * 13 12 11 15 15 O 1.21286 * 119.99888 * 179.97438 * 14 13 12 16 16 C 1.50695 * 120.00050 * 359.96576 * 14 13 12 17 17 H 1.08996 * 109.60624 * 60.31603 * 16 14 13 18 18 C 1.53347 * 109.60548 * 180.81025 * 16 14 13 19 19 C 1.53052 * 108.43951 * 187.27143 * 18 16 14 20 20 C 1.50178 * 109.89670 * 311.11147 * 19 18 16 21 21 O 1.21271 * 118.25235 * 197.56083 * 20 19 18 22 22 N 1.33363 * 123.50227 * 17.58401 * 20 19 18 23 23 C 1.45747 * 124.10943 * 357.75607 * 22 20 19 24 24 C 1.47020 * 108.70377 * 24.12938 * 13 12 11 25 25 H 0.96994 * 120.00054 * 174.90604 * 1 2 3 26 26 H 0.96697 * 113.99963 * 53.81494 * 10 9 7 27 27 H 1.08998 * 111.00615 * 271.94140 * 11 9 7 28 28 H 1.08998 * 110.99806 * 35.79408 * 11 9 7 29 29 H 1.09003 * 110.36567 * 204.15960 * 12 11 9 30 30 H 1.09002 * 110.36704 * 81.83036 * 12 11 9 31 31 H 1.09003 * 109.67311 * 307.02032 * 18 16 14 32 32 H 1.08998 * 109.67136 * 67.54928 * 18 16 14 33 33 H 1.08999 * 109.39708 * 190.98467 * 19 18 16 34 34 H 1.09000 * 109.33172 * 71.19730 * 19 18 16 35 35 H 0.97005 * 117.94306 * 177.77709 * 22 20 19 36 36 H 1.09005 * 109.29777 * 258.78774 * 23 22 20 37 37 H 1.08994 * 109.13726 * 139.30494 * 23 22 20 38 38 H 1.09001 * 109.88104 * 239.51720 * 24 13 12 39 39 H 1.09006 * 109.87903 * 118.35800 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6965 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 1.5070 -2.1049 0.2980 9 6 3.4523 -1.2281 -0.4175 10 8 3.5950 -0.8102 -1.7765 11 6 4.3159 -0.3486 0.5249 12 6 5.7038 -1.0244 0.3959 13 7 5.4136 -2.4664 0.2969 14 6 6.2614 -3.4624 0.6220 15 8 5.9144 -4.6182 0.5002 16 6 7.6406 -3.1400 1.1367 17 1 7.5615 -2.5590 2.0555 18 6 8.4046 -4.4410 1.4108 19 6 9.7255 -4.0907 2.1002 20 6 10.4205 -2.9938 1.3457 21 8 11.6024 -2.8159 1.5506 22 7 9.8071 -2.2046 0.4628 23 6 8.4055 -2.3352 0.0852 24 6 4.0459 -2.6380 -0.2146 25 1 -0.4850 -0.8367 -0.0746 26 1 3.1965 0.0499 -1.9674 27 1 4.3496 0.6830 0.1745 28 1 3.9503 -0.3995 1.5505 29 1 6.3092 -0.8191 1.2788 30 1 6.2127 -0.6772 -0.5033 31 1 7.8114 -5.0852 2.0599 32 1 8.6065 -4.9532 0.4701 33 1 10.3649 -4.9730 2.1271 34 1 9.5240 -3.7583 3.1185 35 1 10.3266 -1.4996 0.0456 36 1 8.3375 -2.8432 -0.8769 37 1 7.9643 -1.3422 0.0002 38 1 3.4468 -3.1921 0.5080 39 1 4.0699 -3.1706 -1.1654 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001639943611.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:44 Heat of formation + Delta-G solvation = -114.735396 kcal Electronic energy + Delta-G solvation = -23076.222712 eV Core-core repulsion = 19597.747108 eV Total energy + Delta-G solvation = -3478.475604 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -40.85563 -39.62271 -37.88690 -36.32091 -34.81546 -33.22671 -32.62716 -30.94527 -29.87062 -28.39283 -25.43533 -24.86624 -23.24610 -22.46611 -20.45969 -19.66256 -18.90843 -18.02502 -17.49164 -16.96276 -16.27153 -15.90978 -15.69916 -15.40621 -14.98394 -14.59760 -14.34219 -13.99738 -13.82481 -13.61661 -13.27854 -12.69754 -12.57015 -12.27656 -12.25535 -11.95079 -11.87672 -11.62908 -11.40107 -11.25749 -11.08662 -10.66574 -10.43158 -9.97797 -9.79307 -9.66734 -9.49177 -9.35982 -9.04054 -8.42492 -8.34846 -6.76550 -4.47389 2.40662 2.64501 2.99613 3.02168 3.14077 3.17322 3.34611 4.15751 4.26188 4.28919 4.42445 4.45919 4.81481 4.90200 4.97391 5.02231 5.09033 5.17717 5.27679 5.39667 5.43756 5.49621 5.52372 5.71396 5.78425 5.92586 6.00739 6.26129 6.42602 6.48140 6.48619 6.63911 6.81094 7.03120 7.59675 7.74833 7.95436 8.06442 8.27520 8.54257 8.68281 9.25425 10.58789 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.031647 B = 0.004433 C = 0.004114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.537003 B = 6314.192446 C = 6804.953047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.037 3.963 3 Si 1.046 2.954 4 H -0.286 1.286 5 H -0.276 1.276 6 H -0.282 1.282 7 C -0.622 4.622 8 H 0.067 0.933 9 C 0.219 3.781 10 O -0.581 6.581 11 C -0.174 4.174 12 C 0.098 3.902 13 N -0.608 5.608 14 C 0.532 3.468 15 O -0.541 6.541 16 C -0.121 4.121 17 H 0.106 0.894 18 C -0.103 4.103 19 C -0.135 4.135 20 C 0.520 3.480 21 O -0.561 6.561 22 N -0.717 5.717 23 C 0.113 3.887 24 C 0.133 3.867 25 H 0.275 0.725 26 H 0.365 0.635 27 H 0.071 0.929 28 H 0.088 0.912 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.105 0.895 34 H 0.102 0.898 35 H 0.402 0.598 36 H 0.074 0.926 37 H 0.090 0.910 38 H 0.077 0.923 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.116 -1.153 2.149 15.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.171 4.171 3 Si 0.875 3.125 4 H -0.212 1.212 5 H -0.202 1.202 6 H -0.209 1.209 7 C -0.659 4.659 8 H 0.085 0.915 9 C 0.179 3.821 10 O -0.390 6.390 11 C -0.212 4.212 12 C -0.025 4.025 13 N -0.341 5.341 14 C 0.319 3.681 15 O -0.419 6.419 16 C -0.143 4.143 17 H 0.124 0.876 18 C -0.141 4.141 19 C -0.175 4.175 20 C 0.307 3.693 21 O -0.440 6.440 22 N -0.369 5.369 23 C -0.012 4.012 24 C 0.011 3.989 25 H 0.085 0.915 26 H 0.215 0.785 27 H 0.090 0.910 28 H 0.106 0.894 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.108 0.892 32 H 0.096 0.904 33 H 0.124 0.876 34 H 0.120 0.880 35 H 0.237 0.763 36 H 0.092 0.908 37 H 0.108 0.892 38 H 0.096 0.904 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 15.527 -0.874 2.346 15.728 hybrid contribution -0.135 -0.676 -0.177 0.711 sum 15.392 -1.549 2.168 15.621 Atomic orbital electron populations 1.70789 1.07088 1.31120 1.42576 1.25820 0.96239 1.02340 0.92734 0.84202 0.74858 0.76360 0.77034 1.21248 1.20245 1.20924 1.22275 0.94533 0.97531 1.51587 0.91483 1.19866 0.94215 0.88559 0.79486 1.86377 1.81587 1.41105 1.29961 1.23988 0.94497 0.99374 1.03372 1.22479 0.98963 0.80477 1.00557 1.48655 1.15640 1.06354 1.63450 1.19750 0.85545 0.84569 0.78252 1.90704 1.77420 1.19414 1.54358 1.21589 0.93035 0.99235 1.00418 0.87575 1.21497 0.94245 0.95854 1.02543 1.21692 0.97400 0.98058 1.00356 1.20270 0.87071 0.82717 0.79241 1.90756 1.16181 1.71465 1.65643 1.45446 1.12013 1.35291 1.44131 1.21493 0.80474 1.01692 0.97509 1.21948 0.79965 0.98200 0.98743 0.91459 0.78518 0.91024 0.89384 0.91341 0.91192 0.89185 0.90350 0.87646 0.87960 0.76260 0.90765 0.89182 0.90435 0.91589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.88 13.70 55.43 0.76 -24.12 16 2 C 0.04 0.95 5.35 -17.81 -0.10 0.86 16 3 Si 1.05 21.74 23.51 -169.99 -4.00 17.74 16 4 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -5.24 6.35 56.52 0.36 -4.88 16 6 H -0.28 -5.18 5.81 56.52 0.33 -4.85 16 7 C -0.62 -15.88 8.66 -34.44 -0.30 -16.18 16 8 H 0.07 1.88 7.82 -52.49 -0.41 1.47 16 9 C 0.22 4.70 0.81 -89.94 -0.07 4.63 16 10 O -0.58 -12.60 13.10 -35.23 -0.46 -13.06 16 11 C -0.17 -3.13 4.06 -24.58 -0.10 -3.23 16 12 C 0.10 1.39 5.13 -2.53 -0.01 1.38 16 13 N -0.61 -10.01 3.32 -170.52 -0.57 -10.57 16 14 C 0.53 8.16 7.20 -10.99 -0.08 8.08 16 15 O -0.54 -10.17 16.22 5.55 0.09 -10.08 16 16 C -0.12 -1.30 1.94 -91.63 -0.18 -1.48 16 17 H 0.11 1.00 7.85 -51.93 -0.41 0.59 16 18 C -0.10 -1.03 4.72 -26.52 -0.13 -1.15 16 19 C -0.14 -1.20 6.03 -28.11 -0.17 -1.37 16 20 C 0.52 5.86 7.71 -11.87 -0.09 5.77 16 21 O -0.56 -8.47 17.78 5.57 0.10 -8.37 16 22 N -0.72 -6.69 5.45 -61.39 -0.33 -7.02 16 23 C 0.11 1.05 6.14 -4.49 -0.03 1.02 16 24 C 0.13 2.69 6.22 -3.07 -0.02 2.67 16 25 H 0.28 7.78 8.73 -40.82 -0.36 7.42 16 26 H 0.37 7.51 5.76 45.56 0.26 7.77 16 27 H 0.07 1.23 4.70 -51.93 -0.24 0.98 16 28 H 0.09 1.63 7.92 -51.93 -0.41 1.22 16 29 H 0.07 0.76 7.27 -51.93 -0.38 0.38 16 30 H 0.07 0.90 7.29 -51.93 -0.38 0.52 16 31 H 0.09 0.93 7.89 -51.93 -0.41 0.52 16 32 H 0.08 0.82 8.13 -51.93 -0.42 0.40 16 33 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.40 3.29 8.80 -40.82 -0.36 2.93 16 36 H 0.07 0.72 8.11 -51.93 -0.42 0.30 16 37 H 0.09 0.74 5.36 -51.93 -0.28 0.47 16 38 H 0.08 1.66 7.66 -51.93 -0.40 1.26 16 39 H 0.07 1.39 8.07 -51.93 -0.42 0.97 16 LS Contribution 303.94 15.07 4.58 4.58 Total: -1.00 -31.59 303.94 -5.89 -37.48 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -4.79 Total: 12.45 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -1.27 Total: 0.99 kcal Atomic # 7 Polarization: -41.58 SS G_CDS: -0.14 Total: -41.72 kcal Atomic # 8 Polarization: -31.24 SS G_CDS: -0.27 Total: -31.51 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.00 Total: 17.74 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.59 -5.89 -37.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001639943611.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.257 kcal (2) G-P(sol) polarization free energy of solvation -31.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds