Wall clock time and date at job start Tue Mar 31 2020 02:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86799 * 120.00024 * 2 1 4 4 H 1.48502 * 109.46864 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.46915 * 119.99909 * 3 2 1 6 6 H 1.48497 * 109.47400 * 240.00148 * 3 2 1 7 7 C 1.37881 * 119.99735 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99828 * 341.36106 * 7 2 1 9 9 C 1.50693 * 119.99803 * 161.37015 * 7 2 1 10 10 O 1.42902 * 110.63915 * 297.89680 * 9 7 2 11 11 C 1.55162 * 110.72411 * 61.23160 * 9 7 2 12 12 C 1.54908 * 101.58221 * 153.86646 * 11 9 7 13 13 N 1.47426 * 104.83038 * 322.99214 * 12 11 9 14 14 C 1.34783 * 125.64595 * 204.16034 * 13 12 11 15 15 O 1.21286 * 119.99888 * 179.97438 * 14 13 12 16 16 C 1.50695 * 120.00050 * 359.96576 * 14 13 12 17 17 H 1.08996 * 109.60624 * 60.31603 * 16 14 13 18 18 C 1.53347 * 109.60548 * 180.81025 * 16 14 13 19 19 C 1.53052 * 108.43951 * 187.27143 * 18 16 14 20 20 C 1.50178 * 109.89670 * 311.11147 * 19 18 16 21 21 O 1.21271 * 118.25235 * 197.56083 * 20 19 18 22 22 N 1.33363 * 123.50227 * 17.58401 * 20 19 18 23 23 C 1.45747 * 124.10943 * 357.75607 * 22 20 19 24 24 C 1.47020 * 108.70377 * 24.12938 * 13 12 11 25 25 H 0.96994 * 120.00054 * 174.90604 * 1 2 3 26 26 H 0.96697 * 113.99963 * 53.81494 * 10 9 7 27 27 H 1.08998 * 111.00615 * 271.94140 * 11 9 7 28 28 H 1.08998 * 110.99806 * 35.79408 * 11 9 7 29 29 H 1.09003 * 110.36567 * 204.15960 * 12 11 9 30 30 H 1.09002 * 110.36704 * 81.83036 * 12 11 9 31 31 H 1.09003 * 109.67311 * 307.02032 * 18 16 14 32 32 H 1.08998 * 109.67136 * 67.54928 * 18 16 14 33 33 H 1.08999 * 109.39708 * 190.98467 * 19 18 16 34 34 H 1.09000 * 109.33172 * 71.19730 * 19 18 16 35 35 H 0.97005 * 117.94306 * 177.77709 * 22 20 19 36 36 H 1.09005 * 109.29777 * 258.78774 * 23 22 20 37 37 H 1.08994 * 109.13726 * 139.30494 * 23 22 20 38 38 H 1.09001 * 109.88104 * 239.51720 * 24 13 12 39 39 H 1.09006 * 109.87903 * 118.35800 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6965 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 1.5070 -2.1049 0.2980 9 6 3.4523 -1.2281 -0.4175 10 8 3.5950 -0.8102 -1.7765 11 6 4.3159 -0.3486 0.5249 12 6 5.7038 -1.0244 0.3959 13 7 5.4136 -2.4664 0.2969 14 6 6.2614 -3.4624 0.6220 15 8 5.9144 -4.6182 0.5002 16 6 7.6406 -3.1400 1.1367 17 1 7.5615 -2.5590 2.0555 18 6 8.4046 -4.4410 1.4108 19 6 9.7255 -4.0907 2.1002 20 6 10.4205 -2.9938 1.3457 21 8 11.6024 -2.8159 1.5506 22 7 9.8071 -2.2046 0.4628 23 6 8.4055 -2.3352 0.0852 24 6 4.0459 -2.6380 -0.2146 25 1 -0.4850 -0.8367 -0.0746 26 1 3.1965 0.0499 -1.9674 27 1 4.3496 0.6830 0.1745 28 1 3.9503 -0.3995 1.5505 29 1 6.3092 -0.8191 1.2788 30 1 6.2127 -0.6772 -0.5033 31 1 7.8114 -5.0852 2.0599 32 1 8.6065 -4.9532 0.4701 33 1 10.3649 -4.9730 2.1271 34 1 9.5240 -3.7583 3.1185 35 1 10.3266 -1.4996 0.0456 36 1 8.3375 -2.8432 -0.8769 37 1 7.9643 -1.3422 0.0002 38 1 3.4468 -3.1921 0.5080 39 1 4.0699 -3.1706 -1.1654 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001639943611.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:43 Heat of formation + Delta-G solvation = -142.499199 kcal Electronic energy + Delta-G solvation = -23077.426641 eV Core-core repulsion = 19597.747108 eV Total energy + Delta-G solvation = -3479.679533 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.86582 -40.77634 -39.32980 -37.30253 -36.35548 -34.60822 -34.01382 -32.22403 -31.04530 -29.83429 -26.99624 -25.78521 -24.41897 -23.63891 -21.88969 -20.89779 -19.98785 -19.80312 -18.57698 -17.98567 -17.41459 -17.18969 -16.94625 -16.67233 -16.07129 -15.88824 -15.39120 -15.10940 -15.03907 -14.82612 -14.47267 -14.41345 -13.92036 -13.70848 -13.65928 -13.12189 -12.91687 -12.82912 -12.64538 -12.30721 -12.14043 -12.08965 -12.00348 -11.52018 -11.13923 -10.96472 -10.88828 -10.83797 -10.28727 -10.15263 -9.71239 -8.85222 -6.57948 1.38948 1.47134 1.51540 1.58420 1.70857 1.86712 2.28112 2.44852 2.90451 3.27384 3.48627 3.53245 3.63335 3.66325 3.79353 3.91771 4.15357 4.20090 4.26189 4.36027 4.42193 4.49648 4.61587 4.69250 4.72811 4.86183 4.95232 4.99733 5.05140 5.07667 5.17821 5.29455 5.74973 5.78274 5.88836 6.24503 6.35805 6.52463 7.00214 7.03832 7.16126 7.26577 8.48505 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.031647 B = 0.004433 C = 0.004114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.537003 B = 6314.192446 C = 6804.953047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.011 4.011 3 Si 1.082 2.918 4 H -0.301 1.301 5 H -0.238 1.238 6 H -0.237 1.237 7 C -0.634 4.634 8 H 0.017 0.983 9 C 0.215 3.785 10 O -0.584 6.584 11 C -0.173 4.173 12 C 0.100 3.900 13 N -0.609 5.609 14 C 0.531 3.469 15 O -0.583 6.583 16 C -0.111 4.111 17 H 0.133 0.867 18 C -0.099 4.099 19 C -0.126 4.126 20 C 0.517 3.483 21 O -0.604 6.604 22 N -0.705 5.705 23 C 0.117 3.883 24 C 0.138 3.862 25 H 0.255 0.745 26 H 0.371 0.629 27 H 0.091 0.909 28 H 0.080 0.920 29 H 0.115 0.885 30 H 0.096 0.904 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.113 0.887 34 H 0.122 0.878 35 H 0.409 0.591 36 H 0.071 0.929 37 H 0.113 0.887 38 H 0.049 0.951 39 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.499 1.030 2.598 18.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.211 4.211 3 Si 0.903 3.097 4 H -0.229 1.229 5 H -0.162 1.162 6 H -0.161 1.161 7 C -0.671 4.671 8 H 0.035 0.965 9 C 0.174 3.826 10 O -0.394 6.394 11 C -0.211 4.211 12 C -0.021 4.021 13 N -0.342 5.342 14 C 0.320 3.680 15 O -0.463 6.463 16 C -0.132 4.132 17 H 0.151 0.849 18 C -0.137 4.137 19 C -0.165 4.165 20 C 0.306 3.694 21 O -0.486 6.486 22 N -0.356 5.356 23 C -0.007 4.007 24 C 0.015 3.985 25 H 0.064 0.936 26 H 0.221 0.779 27 H 0.110 0.890 28 H 0.099 0.901 29 H 0.133 0.867 30 H 0.114 0.886 31 H 0.103 0.897 32 H 0.087 0.913 33 H 0.131 0.869 34 H 0.140 0.860 35 H 0.246 0.754 36 H 0.089 0.911 37 H 0.130 0.870 38 H 0.067 0.933 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 18.930 1.298 2.781 19.178 hybrid contribution -1.314 -1.512 -0.351 2.033 sum 17.617 -0.214 2.430 17.785 Atomic orbital electron populations 1.70946 1.08686 1.29952 1.45941 1.27496 0.95967 1.06579 0.91084 0.83879 0.74644 0.70659 0.80565 1.22904 1.16191 1.16132 1.22476 0.97318 0.95854 1.51477 0.96486 1.19759 0.92345 0.90427 0.80064 1.86354 1.81332 1.41685 1.29979 1.23863 0.95706 0.99943 1.01601 1.22732 0.97322 0.78014 1.04051 1.48682 1.13970 1.08067 1.63440 1.20589 0.86768 0.83618 0.76975 1.90693 1.78500 1.21298 1.55836 1.21591 0.89781 1.00239 1.01635 0.84919 1.21446 0.94629 0.95470 1.02201 1.21666 0.96364 0.97723 1.00793 1.20625 0.86573 0.82959 0.79267 1.90749 1.17982 1.72715 1.67187 1.45352 1.12000 1.34908 1.43323 1.21504 0.80080 1.02488 0.96630 1.21555 0.82408 0.97278 0.97300 0.93580 0.77895 0.89041 0.90094 0.86726 0.88567 0.89653 0.91294 0.86869 0.86010 0.75368 0.91055 0.86956 0.93257 0.93450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.13 13.70 21.45 0.29 -53.84 16 2 C -0.01 -0.58 5.35 84.65 0.45 -0.13 16 3 Si 1.08 41.33 23.51 68.60 1.61 42.95 16 4 H -0.30 -12.34 7.11 99.48 0.71 -11.63 16 5 H -0.24 -7.68 6.35 99.48 0.63 -7.05 16 6 H -0.24 -7.32 5.81 99.48 0.58 -6.74 16 7 C -0.63 -33.54 8.66 25.60 0.22 -33.32 16 8 H 0.02 1.02 7.82 -2.91 -0.02 1.00 16 9 C 0.21 9.01 0.81 -10.35 -0.01 9.01 16 10 O -0.58 -24.18 13.10 -148.98 -1.95 -26.14 16 11 C -0.17 -5.53 4.06 31.99 0.13 -5.40 16 12 C 0.10 2.31 5.13 86.85 0.45 2.75 16 13 N -0.61 -18.58 3.32 -811.79 -2.70 -21.28 16 14 C 0.53 15.14 7.20 87.65 0.63 15.77 16 15 O -0.58 -21.75 16.22 -3.05 -0.05 -21.80 16 16 C -0.11 -1.95 1.94 -11.45 -0.02 -1.98 16 17 H 0.13 1.73 7.85 -2.39 -0.02 1.72 16 18 C -0.10 -1.71 4.72 30.73 0.14 -1.56 16 19 C -0.13 -1.84 6.03 29.70 0.18 -1.66 16 20 C 0.52 10.05 7.71 87.71 0.68 10.73 16 21 O -0.60 -16.91 17.78 -3.00 -0.05 -16.97 16 22 N -0.70 -10.36 5.45 -467.32 -2.55 -12.90 16 23 C 0.12 1.64 6.14 86.50 0.53 2.17 16 24 C 0.14 5.64 6.22 86.73 0.54 6.18 16 25 H 0.26 15.48 8.73 -92.71 -0.81 14.67 16 26 H 0.37 14.17 5.76 -74.06 -0.43 13.75 16 27 H 0.09 2.59 4.70 -2.39 -0.01 2.58 16 28 H 0.08 2.72 7.92 -2.39 -0.02 2.70 16 29 H 0.11 1.69 7.27 -2.39 -0.02 1.67 16 30 H 0.10 1.81 7.29 -2.39 -0.02 1.79 16 31 H 0.08 1.59 7.89 -2.39 -0.02 1.57 16 32 H 0.07 1.32 8.13 -2.39 -0.02 1.30 16 33 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.41 5.11 8.80 -92.70 -0.82 4.29 16 36 H 0.07 1.11 8.11 -2.38 -0.02 1.09 16 37 H 0.11 1.13 5.36 -2.39 -0.01 1.12 16 38 H 0.05 2.24 7.66 -2.39 -0.02 2.23 16 39 H 0.05 2.06 8.07 -2.38 -0.02 2.05 16 Total: -1.00 -74.60 303.94 -1.86 -76.46 By element: Atomic # 1 Polarization: 31.33 SS G_CDS: -0.39 Total: 30.95 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: 3.92 Total: 2.56 kcal Atomic # 7 Polarization: -83.07 SS G_CDS: -4.95 Total: -88.02 kcal Atomic # 8 Polarization: -62.85 SS G_CDS: -2.05 Total: -64.90 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 1.61 Total: 42.95 kcal Total: -74.60 -1.86 -76.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001639943611.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.038 kcal (2) G-P(sol) polarization free energy of solvation -74.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds