Wall clock time and date at job start Tue Mar 31 2020 02:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86797 * 119.99787 * 2 1 4 4 H 1.48500 * 109.47309 * 85.01964 * 3 2 1 5 5 H 1.48500 * 109.47052 * 205.02256 * 3 2 1 6 6 H 1.48500 * 109.47143 * 325.01834 * 3 2 1 7 7 C 1.40046 * 120.00068 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99749 * 186.78953 * 7 2 1 9 9 C 1.46370 * 120.00170 * 6.79296 * 7 2 1 10 10 O 1.21689 * 120.00101 * 6.75142 * 9 7 2 11 11 N 1.34781 * 120.00175 * 186.74986 * 9 7 2 12 12 C 1.46496 * 119.99983 * 179.97438 * 11 9 7 13 13 H 1.09002 * 110.43726 * 36.08765 * 12 11 9 14 14 C 1.54629 * 110.48617 * 158.76963 * 12 11 9 15 15 C 1.54489 * 101.76454 * 143.47516 * 14 12 11 16 16 N 1.46762 * 105.47182 * 334.58838 * 15 14 12 17 17 C 1.46498 * 124.34729 * 197.03795 * 16 15 14 18 18 C 1.53180 * 109.54408 * 239.82160 * 17 16 15 19 19 C 1.53104 * 109.15599 * 183.24012 * 18 17 16 20 20 O 1.42905 * 109.48587 * 57.47519 * 19 18 17 21 21 C 1.42898 * 114.09829 * 298.88577 * 20 19 18 22 22 C 1.53090 * 109.41293 * 61.16030 * 21 20 19 23 23 C 1.34419 * 111.30153 * 17.01113 * 16 15 14 24 24 O 1.21291 * 124.93940 * 179.55772 * 23 16 15 25 25 H 0.96992 * 120.00478 * 0.02562 * 1 2 3 26 26 H 0.96999 * 119.99847 * 359.97438 * 11 9 7 27 27 H 1.08995 * 110.97000 * 261.59526 * 14 12 11 28 28 H 1.08998 * 110.96612 * 25.36112 * 14 12 11 29 29 H 1.08994 * 110.24448 * 215.58656 * 15 14 12 30 30 H 1.08996 * 110.24570 * 93.58753 * 15 14 12 31 31 H 1.09002 * 109.54445 * 359.97438 * 17 16 15 32 32 H 1.09004 * 109.51953 * 303.05734 * 18 17 16 33 33 H 1.08999 * 109.51922 * 63.24679 * 18 17 16 34 34 H 1.08993 * 109.41057 * 297.49100 * 19 18 17 35 35 H 1.08998 * 109.48741 * 177.50545 * 19 18 17 36 36 H 1.09001 * 109.48024 * 301.17517 * 21 20 19 37 37 H 1.08998 * 109.49032 * 181.14822 * 21 20 19 38 38 H 1.09011 * 109.51698 * 182.48344 * 22 21 20 39 39 H 1.08998 * 109.57532 * 62.33309 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.3829 2.1072 1.3948 5 1 3.5869 1.4121 -0.5922 6 1 1.4947 2.6200 -0.8027 7 6 2.0070 -1.2128 -0.0005 8 1 3.0813 -1.2161 0.1100 9 6 1.2829 -2.4759 -0.1510 10 8 0.0914 -2.4685 -0.3983 11 7 1.9358 -3.6473 -0.0158 12 6 1.2109 -4.9115 -0.1659 13 1 0.4471 -4.8228 -0.9385 14 6 2.1905 -6.0607 -0.4987 15 6 1.5657 -7.2417 0.2770 16 7 0.8064 -6.6312 1.3746 17 6 0.3462 -7.3535 2.5632 18 6 -1.1811 -7.2752 2.6509 19 6 -1.6463 -7.9626 3.9374 20 8 -1.0206 -7.3422 5.0625 21 6 0.4059 -7.4276 5.0573 22 6 0.9537 -6.7168 3.8169 23 6 0.5881 -5.3241 1.1495 24 8 -0.0204 -4.5834 1.8927 25 1 -0.4850 0.8399 -0.0004 26 1 2.8856 -3.6532 0.1809 27 1 2.2060 -6.2622 -1.5698 28 1 3.1920 -5.8385 -0.1304 29 1 2.3481 -7.8885 0.6736 30 1 0.8994 -7.8092 -0.3726 31 1 0.6543 -8.3970 2.4978 32 1 -1.4921 -6.2306 2.6645 33 1 -1.6216 -7.7763 1.7888 34 1 -1.3718 -9.0169 3.9045 35 1 -2.7287 -7.8714 4.0275 36 1 0.7072 -8.4749 5.0390 37 1 0.8020 -6.9510 5.9540 38 1 2.0386 -6.8188 3.7881 39 1 0.6881 -5.6603 3.8543 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001642998578.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:16:09 Heat of formation + Delta-G solvation = -114.209123 kcal Electronic energy + Delta-G solvation = -23008.805452 eV Core-core repulsion = 19530.352669 eV Total energy + Delta-G solvation = -3478.452783 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.52185 -38.87129 -36.92016 -35.88792 -34.35060 -32.59095 -31.92265 -31.17346 -29.36302 -27.09866 -25.64105 -24.55683 -23.61973 -21.65738 -20.95956 -19.89390 -18.56524 -17.37879 -16.69479 -16.34187 -16.01305 -15.68602 -15.21792 -15.02889 -14.57800 -14.21252 -14.07350 -13.92304 -13.43265 -13.26460 -12.97581 -12.42097 -12.35756 -12.09486 -11.94296 -11.88296 -11.61739 -11.30609 -11.05745 -10.97057 -10.95541 -10.73789 -10.42798 -10.40119 -10.18114 -9.75810 -9.25812 -8.76528 -8.44588 -7.58314 -7.46886 -6.14850 -4.57012 3.06321 3.18527 3.19284 3.25214 3.29090 3.82267 4.15257 4.49247 4.57696 4.68015 4.70024 4.79849 4.92434 4.96356 5.02021 5.10226 5.20874 5.26351 5.31536 5.36841 5.50501 5.52714 5.58212 5.73746 5.84906 5.88357 5.92795 6.04061 6.24594 6.29526 6.31680 6.87828 7.11713 7.42956 7.49144 7.89192 8.04812 8.35308 8.77677 9.08313 9.52713 10.66116 10.83933 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.023163 B = 0.004479 C = 0.004107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.556730 B = 6249.855005 C = 6815.974729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.089 3.911 3 Si 0.907 3.093 4 H -0.273 1.273 5 H -0.265 1.265 6 H -0.279 1.279 7 C -0.546 4.546 8 H 0.067 0.933 9 C 0.560 3.440 10 O -0.569 6.569 11 N -0.747 5.747 12 C 0.129 3.871 13 H 0.109 0.891 14 C -0.138 4.138 15 C 0.110 3.890 16 N -0.631 5.631 17 C 0.165 3.835 18 C -0.175 4.175 19 C 0.068 3.932 20 O -0.381 6.381 21 C 0.068 3.932 22 C -0.173 4.173 23 C 0.502 3.498 24 O -0.491 6.491 25 H 0.268 0.732 26 H 0.383 0.617 27 H 0.091 0.909 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.048 0.952 35 H 0.095 0.905 36 H 0.048 0.952 37 H 0.095 0.905 38 H 0.073 0.927 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.599 -18.767 3.674 19.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.131 4.131 3 Si 0.732 3.268 4 H -0.199 1.199 5 H -0.189 1.189 6 H -0.204 1.204 7 C -0.583 4.583 8 H 0.085 0.915 9 C 0.364 3.636 10 O -0.450 6.450 11 N -0.403 5.403 12 C 0.018 3.982 13 H 0.126 0.874 14 C -0.177 4.177 15 C -0.014 4.014 16 N -0.369 5.369 17 C 0.062 3.938 18 C -0.213 4.213 19 C -0.009 4.009 20 O -0.299 6.299 21 C -0.009 4.009 22 C -0.212 4.212 23 C 0.287 3.713 24 O -0.362 6.362 25 H 0.079 0.921 26 H 0.215 0.785 27 H 0.109 0.891 28 H 0.102 0.898 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.111 0.889 33 H 0.092 0.908 34 H 0.066 0.934 35 H 0.113 0.887 36 H 0.066 0.934 37 H 0.113 0.887 38 H 0.091 0.909 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.055 -18.132 4.081 18.835 hybrid contribution 1.135 0.509 -0.167 1.255 sum 4.190 -17.623 3.914 18.532 Atomic orbital electron populations 1.70006 1.07101 1.27299 1.35034 1.25679 0.94558 1.00222 0.92609 0.86377 0.80245 0.81608 0.78611 1.19895 1.18864 1.20402 1.20802 0.94090 0.89444 1.53968 0.91461 1.18235 0.86784 0.82107 0.76508 1.90604 1.15598 1.86332 1.52500 1.46112 1.11139 1.03609 1.79440 1.21120 0.95826 0.86273 0.94938 0.87379 1.22885 0.99422 0.94018 1.01345 1.21968 0.94989 0.95933 0.88489 1.48505 1.57466 1.10506 1.20424 1.20803 0.93672 0.95038 0.84294 1.22651 0.95743 1.04546 0.98374 1.22521 0.98153 0.95050 0.85198 1.87957 1.19122 1.78916 1.43942 1.22523 0.81153 0.99014 0.98239 1.22635 1.00672 1.03515 0.94365 1.21868 0.79496 0.80848 0.89045 1.90733 1.39146 1.55361 1.50975 0.92086 0.78495 0.89051 0.89816 0.90949 0.91471 0.90060 0.88927 0.90817 0.93421 0.88679 0.93409 0.88686 0.90874 0.88965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.87 11.91 55.55 0.66 -23.21 16 2 C 0.09 2.57 5.48 -17.36 -0.10 2.48 16 3 Si 0.91 20.70 29.56 -169.99 -5.03 15.67 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.26 -5.78 7.11 56.52 0.40 -5.38 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.55 -15.86 9.53 -35.63 -0.34 -16.20 16 8 H 0.07 1.77 7.86 -52.49 -0.41 1.36 16 9 C 0.56 16.37 7.67 -12.99 -0.10 16.27 16 10 O -0.57 -19.04 14.82 5.20 0.08 -18.96 16 11 N -0.75 -16.90 5.15 -55.23 -0.28 -17.18 16 12 C 0.13 2.46 3.23 -67.94 -0.22 2.25 16 13 H 0.11 2.28 7.66 -51.93 -0.40 1.88 16 14 C -0.14 -1.67 6.87 -25.09 -0.17 -1.84 16 15 C 0.11 1.15 7.30 -3.12 -0.02 1.13 16 16 N -0.63 -9.18 2.84 -164.63 -0.47 -9.65 16 17 C 0.16 2.10 2.83 -67.75 -0.19 1.91 16 18 C -0.17 -2.34 5.47 -26.58 -0.15 -2.48 16 19 C 0.07 0.77 6.84 37.21 0.25 1.02 16 20 O -0.38 -5.21 10.77 -35.23 -0.38 -5.59 16 21 C 0.07 0.77 6.84 37.20 0.25 1.02 16 22 C -0.17 -2.31 5.46 -26.59 -0.15 -2.46 16 23 C 0.50 10.10 7.03 -10.86 -0.08 10.02 16 24 O -0.49 -12.55 15.00 5.55 0.08 -12.47 16 25 H 0.27 7.58 8.29 -40.82 -0.34 7.25 16 26 H 0.38 7.49 8.36 -40.82 -0.34 7.15 16 27 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.08 0.92 7.80 -51.93 -0.41 0.52 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 0.79 8.07 -51.93 -0.42 0.37 16 32 H 0.09 1.66 6.68 -51.93 -0.35 1.31 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 39 H 0.09 1.65 6.71 -51.93 -0.35 1.30 16 LS Contribution 320.63 15.07 4.83 4.83 Total: -1.00 -39.28 320.63 -7.11 -46.39 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -5.61 Total: 7.05 kcal Atomic # 6 Polarization: 14.12 SS G_CDS: -1.00 Total: 13.12 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: -0.09 Total: -50.04 kcal Atomic # 8 Polarization: -36.81 SS G_CDS: -0.22 Total: -37.02 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.03 Total: 15.67 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -39.28 -7.11 -46.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001642998578.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.822 kcal (2) G-P(sol) polarization free energy of solvation -39.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds