Wall clock time and date at job start Tue Mar 31 2020 02:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86797 * 119.99787 * 2 1 4 4 H 1.48500 * 109.47309 * 85.01964 * 3 2 1 5 5 H 1.48500 * 109.47052 * 205.02256 * 3 2 1 6 6 H 1.48500 * 109.47143 * 325.01834 * 3 2 1 7 7 C 1.40046 * 120.00068 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99749 * 186.78953 * 7 2 1 9 9 C 1.46370 * 120.00170 * 6.79296 * 7 2 1 10 10 O 1.21689 * 120.00101 * 6.75142 * 9 7 2 11 11 N 1.34781 * 120.00175 * 186.74986 * 9 7 2 12 12 C 1.46496 * 119.99983 * 179.97438 * 11 9 7 13 13 H 1.09002 * 110.43726 * 36.08765 * 12 11 9 14 14 C 1.54629 * 110.48617 * 158.76963 * 12 11 9 15 15 C 1.54489 * 101.76454 * 143.47516 * 14 12 11 16 16 N 1.46762 * 105.47182 * 334.58838 * 15 14 12 17 17 C 1.46498 * 124.34729 * 197.03795 * 16 15 14 18 18 C 1.53180 * 109.54408 * 239.82160 * 17 16 15 19 19 C 1.53104 * 109.15599 * 183.24012 * 18 17 16 20 20 O 1.42905 * 109.48587 * 57.47519 * 19 18 17 21 21 C 1.42898 * 114.09829 * 298.88577 * 20 19 18 22 22 C 1.53090 * 109.41293 * 61.16030 * 21 20 19 23 23 C 1.34419 * 111.30153 * 17.01113 * 16 15 14 24 24 O 1.21291 * 124.93940 * 179.55772 * 23 16 15 25 25 H 0.96992 * 120.00478 * 0.02562 * 1 2 3 26 26 H 0.96999 * 119.99847 * 359.97438 * 11 9 7 27 27 H 1.08995 * 110.97000 * 261.59526 * 14 12 11 28 28 H 1.08998 * 110.96612 * 25.36112 * 14 12 11 29 29 H 1.08994 * 110.24448 * 215.58656 * 15 14 12 30 30 H 1.08996 * 110.24570 * 93.58753 * 15 14 12 31 31 H 1.09002 * 109.54445 * 359.97438 * 17 16 15 32 32 H 1.09004 * 109.51953 * 303.05734 * 18 17 16 33 33 H 1.08999 * 109.51922 * 63.24679 * 18 17 16 34 34 H 1.08993 * 109.41057 * 297.49100 * 19 18 17 35 35 H 1.08998 * 109.48741 * 177.50545 * 19 18 17 36 36 H 1.09001 * 109.48024 * 301.17517 * 21 20 19 37 37 H 1.08998 * 109.49032 * 181.14822 * 21 20 19 38 38 H 1.09011 * 109.51698 * 182.48344 * 22 21 20 39 39 H 1.08998 * 109.57532 * 62.33309 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.3829 2.1072 1.3948 5 1 3.5869 1.4121 -0.5922 6 1 1.4947 2.6200 -0.8027 7 6 2.0070 -1.2128 -0.0005 8 1 3.0813 -1.2161 0.1100 9 6 1.2829 -2.4759 -0.1510 10 8 0.0914 -2.4685 -0.3983 11 7 1.9358 -3.6473 -0.0158 12 6 1.2109 -4.9115 -0.1659 13 1 0.4471 -4.8228 -0.9385 14 6 2.1905 -6.0607 -0.4987 15 6 1.5657 -7.2417 0.2770 16 7 0.8064 -6.6312 1.3746 17 6 0.3462 -7.3535 2.5632 18 6 -1.1811 -7.2752 2.6509 19 6 -1.6463 -7.9626 3.9374 20 8 -1.0206 -7.3422 5.0625 21 6 0.4059 -7.4276 5.0573 22 6 0.9537 -6.7168 3.8169 23 6 0.5881 -5.3241 1.1495 24 8 -0.0204 -4.5834 1.8927 25 1 -0.4850 0.8399 -0.0004 26 1 2.8856 -3.6532 0.1809 27 1 2.2060 -6.2622 -1.5698 28 1 3.1920 -5.8385 -0.1304 29 1 2.3481 -7.8885 0.6736 30 1 0.8994 -7.8092 -0.3726 31 1 0.6543 -8.3970 2.4978 32 1 -1.4921 -6.2306 2.6645 33 1 -1.6216 -7.7763 1.7888 34 1 -1.3718 -9.0169 3.9045 35 1 -2.7287 -7.8714 4.0275 36 1 0.7072 -8.4749 5.0390 37 1 0.8020 -6.9510 5.9540 38 1 2.0386 -6.8188 3.7881 39 1 0.6881 -5.6603 3.8543 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001642998578.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:16:08 Heat of formation + Delta-G solvation = -147.221953 kcal Electronic energy + Delta-G solvation = -23010.236996 eV Core-core repulsion = 19530.352669 eV Total energy + Delta-G solvation = -3479.884327 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.82260 -40.02103 -38.93478 -37.39180 -35.77447 -34.63690 -33.69894 -32.12774 -30.69144 -28.82484 -27.38685 -25.63310 -24.59877 -22.96260 -22.27512 -21.58821 -19.96921 -19.32778 -17.96368 -17.74498 -17.26652 -17.09066 -16.88088 -16.20446 -15.89155 -15.60147 -15.56126 -15.30181 -14.77193 -14.62904 -14.42549 -14.08292 -13.91390 -13.45233 -13.27723 -13.18319 -12.88859 -12.81503 -12.66037 -12.55407 -12.31545 -12.10657 -12.00014 -11.81376 -11.43664 -11.02151 -10.89039 -10.61380 -9.88851 -9.63242 -9.40809 -8.32452 -6.86155 1.36887 1.39807 1.55546 1.60016 1.96356 2.24363 2.48116 2.94259 3.09411 3.37540 3.62048 3.66892 3.74078 3.89760 3.95003 4.02029 4.12222 4.15368 4.25018 4.37481 4.48044 4.57605 4.59154 4.69947 4.73080 4.80504 4.99382 5.02118 5.09921 5.14669 5.19867 5.30035 5.75127 5.84152 6.07032 6.22255 6.24154 6.25123 6.85248 7.31162 7.50493 8.49525 8.67220 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.023163 B = 0.004479 C = 0.004107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.556730 B = 6249.855005 C = 6815.974729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.026 3.974 3 Si 1.001 2.999 4 H -0.265 1.265 5 H -0.243 1.243 6 H -0.272 1.272 7 C -0.577 4.577 8 H 0.090 0.910 9 C 0.543 3.457 10 O -0.626 6.626 11 N -0.736 5.736 12 C 0.114 3.886 13 H 0.076 0.924 14 C -0.119 4.119 15 C 0.107 3.893 16 N -0.617 5.617 17 C 0.159 3.841 18 C -0.174 4.174 19 C 0.069 3.931 20 O -0.412 6.412 21 C 0.068 3.932 22 C -0.171 4.171 23 C 0.490 3.510 24 O -0.565 6.565 25 H 0.274 0.726 26 H 0.398 0.602 27 H 0.119 0.881 28 H 0.102 0.898 29 H 0.120 0.880 30 H 0.094 0.906 31 H 0.137 0.863 32 H 0.031 0.969 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.721 -21.763 3.544 23.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.189 4.189 3 Si 0.820 3.180 4 H -0.190 1.190 5 H -0.165 1.165 6 H -0.197 1.197 7 C -0.613 4.613 8 H 0.108 0.892 9 C 0.347 3.653 10 O -0.512 6.512 11 N -0.391 5.391 12 C 0.004 3.996 13 H 0.094 0.906 14 C -0.157 4.157 15 C -0.015 4.015 16 N -0.352 5.352 17 C 0.057 3.943 18 C -0.212 4.212 19 C -0.007 4.007 20 O -0.331 6.331 21 C -0.008 4.008 22 C -0.209 4.209 23 C 0.276 3.724 24 O -0.442 6.442 25 H 0.083 0.917 26 H 0.233 0.767 27 H 0.138 0.862 28 H 0.120 0.880 29 H 0.138 0.862 30 H 0.112 0.888 31 H 0.155 0.845 32 H 0.050 0.950 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.115 0.885 36 H 0.108 0.892 37 H 0.116 0.884 38 H 0.109 0.891 39 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 6.257 -21.251 3.941 22.500 hybrid contribution 0.147 1.311 -0.127 1.325 sum 6.404 -19.940 3.814 21.287 Atomic orbital electron populations 1.70202 1.09859 1.28956 1.36622 1.27060 0.95466 1.05274 0.91070 0.84968 0.79082 0.74838 0.79102 1.18953 1.16538 1.19680 1.21425 0.95386 0.90264 1.54259 0.89165 1.18632 0.86337 0.84320 0.76052 1.90551 1.17973 1.87696 1.54954 1.45649 1.11769 1.03682 1.78019 1.21417 0.97095 0.87009 0.94073 0.90594 1.22939 0.98215 0.90928 1.03652 1.22409 0.96228 0.95444 0.87390 1.48549 1.56176 1.08697 1.21766 1.21145 0.92946 0.97153 0.83035 1.22618 0.96861 1.01241 1.00530 1.22649 0.98293 0.96603 0.83195 1.87921 1.20613 1.79780 1.44809 1.22671 0.79927 1.01083 0.97156 1.22589 1.01888 1.00254 0.96195 1.22038 0.78969 0.82635 0.88725 1.90700 1.42389 1.57890 1.53205 0.91664 0.76666 0.86242 0.88004 0.86217 0.88806 0.84529 0.95026 0.89334 0.89218 0.88519 0.89208 0.88420 0.89053 0.95007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -54.28 11.91 21.84 0.26 -54.02 16 2 C 0.03 1.53 5.48 85.30 0.47 1.99 16 3 Si 1.00 43.15 29.56 68.60 2.03 45.17 16 4 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 5 H -0.24 -9.49 7.11 99.48 0.71 -8.78 16 6 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 7 C -0.58 -34.53 9.53 24.83 0.24 -34.30 16 8 H 0.09 4.77 7.86 -2.91 -0.02 4.75 16 9 C 0.54 33.51 7.67 86.36 0.66 34.17 16 10 O -0.63 -45.02 14.82 -4.31 -0.06 -45.09 16 11 N -0.74 -34.48 5.15 -446.86 -2.30 -36.78 16 12 C 0.11 4.47 3.23 44.98 0.15 4.62 16 13 H 0.08 3.44 7.66 -2.39 -0.02 3.42 16 14 C -0.12 -2.50 6.87 31.66 0.22 -2.28 16 15 C 0.11 1.73 7.30 86.84 0.63 2.36 16 16 N -0.62 -16.94 2.84 -793.37 -2.25 -19.19 16 17 C 0.16 3.67 2.83 45.11 0.13 3.80 16 18 C -0.17 -4.63 5.47 30.69 0.17 -4.47 16 19 C 0.07 1.46 6.84 72.02 0.49 1.95 16 20 O -0.41 -11.01 10.77 -148.98 -1.60 -12.62 16 21 C 0.07 1.41 6.84 72.01 0.49 1.90 16 22 C -0.17 -4.42 5.46 30.68 0.17 -4.26 16 23 C 0.49 20.63 7.03 87.90 0.62 21.24 16 24 O -0.57 -31.66 15.00 -3.06 -0.05 -31.71 16 25 H 0.27 16.27 8.29 -92.71 -0.77 15.50 16 26 H 0.40 15.68 8.36 -92.71 -0.78 14.90 16 27 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.10 1.82 7.80 -2.39 -0.02 1.80 16 29 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.14 1.77 8.07 -2.39 -0.02 1.75 16 32 H 0.03 1.23 6.68 -2.38 -0.02 1.22 16 33 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.09 1.96 8.14 -2.38 -0.02 1.94 16 39 H 0.03 1.22 6.71 -2.39 -0.02 1.20 16 Total: -1.00 -99.31 320.63 0.74 -98.57 By element: Atomic # 1 Polarization: 28.64 SS G_CDS: 0.29 Total: 28.93 kcal Atomic # 6 Polarization: 22.31 SS G_CDS: 4.43 Total: 26.74 kcal Atomic # 7 Polarization: -105.71 SS G_CDS: -4.29 Total: -110.00 kcal Atomic # 8 Polarization: -87.70 SS G_CDS: -1.71 Total: -89.41 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Total: -99.31 0.74 -98.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001642998578.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.655 kcal (2) G-P(sol) polarization free energy of solvation -99.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds