Wall clock time and date at job start Tue Mar 31 2020 03:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99696 * 2 1 4 4 H 1.48502 * 109.47014 * 269.99549 * 3 2 1 5 5 H 1.48495 * 109.47331 * 29.99790 * 3 2 1 6 6 H 1.48497 * 109.46899 * 149.99929 * 3 2 1 7 7 C 1.37869 * 120.00194 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00285 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00278 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47491 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47159 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00262 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99928 * 179.72352 * 11 10 9 14 14 C 1.47080 * 120.88032 * 0.02562 * 13 11 10 15 15 C 1.53699 * 108.27697 * 128.75295 * 14 13 11 16 16 N 1.46903 * 109.25706 * 54.08274 * 15 14 13 17 17 C 1.46904 * 110.99735 * 172.60788 * 16 15 14 18 18 H 1.09000 * 110.43489 * 73.20799 * 17 16 15 19 19 C 1.54809 * 110.48801 * 310.51720 * 17 16 15 20 20 C 1.54990 * 102.09230 * 220.44442 * 19 17 16 21 21 O 1.44385 * 103.49184 * 37.02347 * 20 19 17 22 22 C 1.43743 * 106.97267 * 319.94093 * 21 20 19 23 23 C 1.46900 * 111.26543 * 296.75315 * 16 15 14 24 24 C 1.47083 * 120.88425 * 180.27648 * 13 11 10 25 25 H 0.97004 * 120.00291 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46801 * 59.99998 * 9 7 2 27 27 H 1.09000 * 109.47461 * 300.00530 * 9 7 2 28 28 H 1.09004 * 109.47066 * 60.00201 * 10 9 7 29 29 H 1.08994 * 109.47405 * 300.00031 * 10 9 7 30 30 H 1.09002 * 109.62409 * 248.51905 * 14 13 11 31 31 H 1.09001 * 109.63200 * 9.09754 * 14 13 11 32 32 H 1.09000 * 109.64873 * 294.07401 * 15 14 13 33 33 H 1.09006 * 109.44195 * 173.96041 * 15 14 13 34 34 H 1.08992 * 110.90645 * 338.64859 * 19 17 16 35 35 H 1.09002 * 110.90548 * 102.24606 * 19 17 16 36 36 H 1.09008 * 110.61900 * 278.52576 * 20 19 17 37 37 H 1.08999 * 110.61740 * 155.52610 * 20 19 17 38 38 H 1.08998 * 109.87987 * 267.08337 * 22 21 20 39 39 H 1.08998 * 109.87559 * 145.93333 * 22 21 20 40 40 H 1.08999 * 109.49361 * 303.14884 * 23 16 15 41 41 H 1.09003 * 109.51306 * 183.08234 * 23 16 15 42 42 H 1.09000 * 109.62176 * 350.90081 * 24 13 11 43 43 H 1.08997 * 109.62957 * 111.28370 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 6 1.4919 -4.9671 0.0033 12 8 0.2791 -4.9672 0.0041 13 7 2.1658 -6.1343 -0.0023 14 6 3.6364 -6.1568 -0.0095 15 6 4.1100 -7.0798 1.1246 16 7 3.4685 -8.3934 0.9799 17 6 4.0243 -9.3590 1.9374 18 1 3.6710 -9.1419 2.9454 19 6 5.5715 -9.3425 1.8872 20 6 5.9161 -10.8494 1.9995 21 8 4.8721 -11.4915 1.2363 22 6 3.6486 -10.7975 1.5323 23 6 2.0097 -8.2924 1.1209 24 6 1.4502 -7.4193 -0.0067 25 1 -0.4851 0.8401 -0.0004 26 1 0.6241 -2.5574 -0.8880 27 1 0.6247 -2.5563 0.8919 28 1 2.8727 -3.6038 0.8910 29 1 2.8713 -3.6047 -0.8890 30 1 3.9920 -6.5365 -0.9674 31 1 4.0189 -5.1491 0.1528 32 1 3.8386 -6.6465 2.0872 33 1 5.1925 -7.1957 1.0700 34 1 5.9256 -8.9319 0.9417 35 1 5.9821 -8.7857 2.7295 36 1 5.8858 -11.1736 3.0398 37 1 6.8929 -11.0535 1.5610 38 1 3.1321 -11.2914 2.3554 39 1 3.0100 -10.7790 0.6492 40 1 1.7677 -7.8422 2.0836 41 1 1.5686 -9.2876 1.0635 42 1 0.3866 -7.2464 0.1575 43 1 1.5965 -7.9166 -0.9655 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589708338.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:15 Heat of formation + Delta-G solvation = -98.446621 kcal Electronic energy + Delta-G solvation = -22585.001359 eV Core-core repulsion = 19243.065184 eV Total energy + Delta-G solvation = -3341.936175 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.39574 -40.43997 -38.56216 -35.64033 -35.61626 -33.33565 -32.29070 -31.68997 -30.04435 -28.08143 -26.93701 -25.13303 -23.78133 -23.10510 -22.21078 -21.34057 -19.85074 -18.90961 -17.98208 -17.41114 -17.18093 -16.82511 -16.68201 -16.43618 -16.11267 -16.00515 -15.51591 -15.05557 -14.81993 -14.75276 -14.21837 -13.87695 -13.74644 -13.47708 -13.19796 -12.93963 -12.81870 -12.76229 -12.49982 -12.38762 -12.29859 -12.06612 -11.96764 -11.94503 -11.75417 -11.55741 -11.30939 -10.70266 -10.59483 -10.57443 -9.82169 -9.34072 -8.18321 -6.32746 1.42242 1.45200 1.56024 1.65276 1.98440 2.42958 2.70697 3.04707 3.14739 3.46229 3.65195 3.89629 3.92994 4.04163 4.12746 4.19198 4.25073 4.30575 4.33471 4.40152 4.44870 4.50799 4.53945 4.70039 4.70974 4.79087 4.80753 4.84493 4.87975 4.92032 5.02356 5.08435 5.10989 5.46417 5.55415 5.60835 5.84055 5.85061 5.96199 6.02459 6.16504 6.39244 6.85737 7.22962 7.37803 8.94530 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.035311 B = 0.003078 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.773440 B = 9094.212106 C = 9695.743159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.008 4.008 3 Si 0.975 3.025 4 H -0.272 1.272 5 H -0.287 1.287 6 H -0.253 1.253 7 C -0.542 4.542 8 H 0.078 0.922 9 C 0.043 3.957 10 C -0.114 4.114 11 C 0.510 3.490 12 O -0.591 6.591 13 N -0.616 5.616 14 C 0.107 3.893 15 C 0.042 3.958 16 N -0.530 5.530 17 C 0.049 3.951 18 H 0.060 0.940 19 C -0.147 4.147 20 C 0.044 3.956 21 O -0.401 6.401 22 C 0.055 3.945 23 C 0.050 3.950 24 C 0.113 3.887 25 H 0.263 0.737 26 H -0.020 1.020 27 H -0.020 1.020 28 H 0.102 0.898 29 H 0.104 0.896 30 H 0.089 0.911 31 H 0.103 0.897 32 H 0.033 0.967 33 H 0.117 0.883 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.070 0.930 37 H 0.105 0.895 38 H 0.068 0.932 39 H 0.088 0.912 40 H 0.029 0.971 41 H 0.105 0.895 42 H 0.071 0.929 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.541 -22.223 4.887 27.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.205 4.205 3 Si 0.799 3.201 4 H -0.197 1.197 5 H -0.213 1.213 6 H -0.177 1.177 7 C -0.580 4.580 8 H 0.096 0.904 9 C 0.006 3.994 10 C -0.154 4.154 11 C 0.300 3.700 12 O -0.471 6.471 13 N -0.350 5.350 14 C -0.015 4.015 15 C -0.087 4.087 16 N -0.255 5.255 17 C -0.060 4.060 18 H 0.078 0.922 19 C -0.185 4.185 20 C -0.032 4.032 21 O -0.320 6.320 22 C -0.022 4.022 23 C -0.078 4.078 24 C -0.009 4.009 25 H 0.071 0.929 26 H -0.001 1.001 27 H -0.001 1.001 28 H 0.121 0.879 29 H 0.122 0.878 30 H 0.107 0.893 31 H 0.121 0.879 32 H 0.051 0.949 33 H 0.135 0.865 34 H 0.108 0.892 35 H 0.115 0.885 36 H 0.089 0.911 37 H 0.123 0.877 38 H 0.086 0.914 39 H 0.106 0.894 40 H 0.047 0.953 41 H 0.123 0.877 42 H 0.090 0.910 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 14.891 -22.482 4.286 27.305 hybrid contribution -0.743 1.420 0.901 1.839 sum 14.148 -21.061 5.188 25.897 Atomic orbital electron populations 1.70185 1.08392 1.27826 1.51501 1.26161 0.95718 1.04034 0.94616 0.85305 0.78706 0.77594 0.78544 1.19701 1.21271 1.17696 1.21705 0.94037 0.91478 1.50756 0.90425 1.18684 0.93668 0.92537 0.94539 1.21625 0.99285 0.90028 1.04459 1.21431 0.87655 0.86674 0.74224 1.90637 1.16655 1.87987 1.51828 1.48342 1.08288 1.05066 1.73328 1.22204 0.77486 1.01615 1.00229 1.22672 1.01113 0.88059 0.96817 1.62088 1.03763 1.08703 1.50991 1.23099 0.96163 0.92625 0.94064 0.92220 1.23302 0.92961 0.97797 1.04404 1.23697 0.92258 0.90704 0.96587 1.88872 1.18240 1.56643 1.68254 1.23240 0.87558 0.89945 1.01456 1.22420 0.88366 1.00616 0.96438 1.21668 0.96732 0.82781 0.99766 0.92862 1.00126 1.00139 0.87947 0.87831 0.89260 0.87930 0.94859 0.86548 0.89194 0.88456 0.91142 0.87683 0.91401 0.89408 0.95314 0.87716 0.91026 0.89950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.98 13.29 21.44 0.28 -59.70 16 2 C -0.01 -0.47 5.46 84.65 0.46 0.00 16 3 Si 0.97 44.16 29.54 68.60 2.03 46.18 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 5 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 6 H -0.25 -10.55 7.11 99.48 0.71 -9.85 16 7 C -0.54 -30.86 9.11 25.60 0.23 -30.62 16 8 H 0.08 3.98 7.74 -2.91 -0.02 3.96 16 9 C 0.04 2.44 4.26 29.85 0.13 2.57 16 10 C -0.11 -4.66 4.00 29.85 0.12 -4.54 16 11 C 0.51 20.52 7.71 87.66 0.68 21.19 16 12 O -0.59 -29.91 15.44 -3.04 -0.05 -29.96 16 13 N -0.62 -17.96 3.00 -817.10 -2.45 -20.42 16 14 C 0.11 2.16 6.53 86.50 0.56 2.73 16 15 C 0.04 0.68 5.31 86.54 0.46 1.14 16 16 N -0.53 -8.90 4.39 -863.35 -3.79 -12.69 16 17 C 0.05 0.67 2.80 45.90 0.13 0.80 16 18 H 0.06 0.81 8.11 -2.39 -0.02 0.79 16 19 C -0.15 -1.52 5.48 31.89 0.17 -1.35 16 20 C 0.04 0.49 7.72 72.66 0.56 1.05 16 21 O -0.40 -7.20 11.52 -148.98 -1.72 -8.91 16 22 C 0.06 0.82 6.90 72.35 0.50 1.32 16 23 C 0.05 0.97 5.43 86.37 0.47 1.44 16 24 C 0.11 2.89 6.59 86.34 0.57 3.46 16 25 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 26 H -0.02 -1.26 8.10 -2.38 -0.02 -1.28 16 27 H -0.02 -1.27 8.10 -2.39 -0.02 -1.29 16 28 H 0.10 3.64 7.67 -2.38 -0.02 3.63 16 29 H 0.10 3.71 7.99 -2.39 -0.02 3.69 16 30 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.10 1.97 6.02 -2.39 -0.01 1.95 16 32 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.12 1.32 6.02 -2.38 -0.01 1.30 16 34 H 0.09 1.00 6.98 -2.39 -0.02 0.98 16 35 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 37 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.09 1.40 7.16 -2.39 -0.02 1.38 16 40 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.10 1.61 6.94 -2.39 -0.02 1.59 16 42 H 0.07 2.18 7.06 -2.39 -0.02 2.16 16 43 H 0.08 1.90 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -78.36 337.14 0.33 -78.03 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: 0.98 Total: 8.29 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: 5.04 Total: -0.82 kcal Atomic # 7 Polarization: -86.85 SS G_CDS: -5.96 Total: -92.81 kcal Atomic # 8 Polarization: -37.11 SS G_CDS: -1.76 Total: -38.88 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Total: -78.36 0.33 -78.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589708338.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.412 kcal (2) G-P(sol) polarization free energy of solvation -78.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds