Wall clock time and date at job start Tue Mar 31 2020 02:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47015 * 2 1 4 4 C 1.53004 * 109.46647 * 119.99575 * 2 1 3 5 5 C 1.53002 * 109.46746 * 175.00189 * 4 2 1 6 6 H 1.09000 * 109.47312 * 55.00097 * 5 4 2 7 7 C 1.50701 * 109.47097 * 175.00196 * 5 4 2 8 8 O 1.21290 * 119.99962 * 119.99826 * 7 5 4 9 9 N 1.34776 * 119.99804 * 300.00079 * 7 5 4 10 10 C 1.37097 * 119.99645 * 179.97438 * 9 7 5 11 11 H 1.08001 * 120.00371 * 359.97438 * 10 9 7 12 12 C 1.38959 * 119.99717 * 180.02562 * 10 9 7 13 13 N 1.31408 * 120.00100 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99987 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47449 * 89.99463 * 14 12 10 16 16 H 1.48499 * 109.47094 * 209.99617 * 14 12 10 17 17 H 1.48505 * 109.47195 * 329.99498 * 14 12 10 18 18 N 1.46506 * 109.47035 * 294.99923 * 5 4 2 19 19 C 1.45754 * 117.94455 * 119.74266 * 18 5 4 20 20 C 1.53102 * 110.38699 * 160.74491 * 19 18 5 21 21 C 1.53337 * 108.52827 * 51.11210 * 20 19 18 22 22 C 1.53068 * 108.42642 * 292.31238 * 21 20 19 23 23 C 1.33347 * 117.95043 * 300.00051 * 18 5 4 24 24 O 1.21289 * 118.24430 * 2.20241 * 23 18 5 25 25 H 1.08997 * 109.47890 * 300.00106 * 1 2 3 26 26 H 1.09000 * 109.47070 * 60.00360 * 1 2 3 27 27 H 1.08999 * 109.47141 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47365 * 239.99899 * 2 1 3 29 29 H 1.09002 * 109.47291 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47240 * 299.99391 * 3 2 1 31 31 H 1.09006 * 109.47205 * 59.99755 * 3 2 1 32 32 H 1.08998 * 109.46791 * 55.00771 * 4 2 1 33 33 H 1.09000 * 109.47409 * 295.00094 * 4 2 1 34 34 H 0.96993 * 120.00049 * 359.97438 * 9 7 5 35 35 H 0.97001 * 120.00144 * 180.02562 * 13 12 10 36 36 H 1.09006 * 109.29764 * 281.23598 * 19 18 5 37 37 H 1.09004 * 109.30200 * 40.60617 * 19 18 5 38 38 H 1.08996 * 109.80145 * 291.32098 * 20 19 18 39 39 H 1.09007 * 109.67742 * 170.82729 * 20 19 18 40 40 H 1.09004 * 109.67261 * 172.57510 * 21 20 19 41 41 H 1.09000 * 109.67795 * 52.04491 * 21 20 19 42 42 H 1.09006 * 109.39727 * 288.76897 * 22 21 20 43 43 H 1.08999 * 109.33549 * 168.99061 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5647 -0.8310 1.1881 6 1 3.9953 0.1612 1.0529 7 6 4.0772 -1.4301 2.4725 8 8 4.7011 -2.4700 2.4500 9 7 3.8422 -0.8105 3.6460 10 6 4.3080 -1.3559 4.8144 11 1 4.8628 -2.2822 4.7945 12 6 4.0652 -0.7173 6.0245 13 7 3.3897 0.4096 6.0488 14 14 4.7004 -1.4599 7.6164 15 1 6.0616 -0.9375 7.8979 16 1 3.7897 -1.0946 8.7310 17 1 4.7548 -2.9382 7.4859 18 7 3.9479 -1.6872 0.0628 19 6 4.7803 -1.1077 -0.9839 20 6 5.4640 -2.2121 -1.7943 21 6 4.3975 -3.2177 -2.2443 22 6 3.8646 -3.9441 -1.0068 23 6 3.5089 -2.9463 0.0577 24 8 2.7837 -3.3050 0.9613 25 1 -0.3635 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6765 1.9563 0.8900 32 1 1.6053 -1.7197 1.2952 33 1 1.7515 -0.1582 2.1371 34 1 3.3436 0.0213 3.6639 35 1 3.2205 0.8556 6.8934 36 1 4.1591 -0.5030 -1.6448 37 1 5.5411 -0.4731 -0.5293 38 1 6.2061 -2.7179 -1.1766 39 1 5.9500 -1.7787 -2.6685 40 1 4.8399 -3.9392 -2.9312 41 1 3.5821 -2.6908 -2.7399 42 1 4.6297 -4.6214 -0.6271 43 1 2.9773 -4.5160 -1.2781 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087233653.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:05:46 Heat of formation + Delta-G solvation = -87.405876 kcal Electronic energy + Delta-G solvation = -24034.767776 eV Core-core repulsion = 20693.310363 eV Total energy + Delta-G solvation = -3341.457413 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.52259 -37.79935 -36.24599 -35.99382 -33.94690 -33.18360 -31.18930 -29.63399 -28.79491 -27.03184 -25.12069 -24.34799 -23.59055 -22.12043 -19.72638 -19.40071 -18.09506 -17.73216 -16.59188 -16.11644 -15.67863 -15.05079 -14.62191 -14.41503 -14.09833 -13.99923 -13.80941 -13.52913 -13.43294 -13.18759 -12.93182 -12.63575 -12.12784 -11.96457 -11.86657 -11.58206 -11.46735 -11.35707 -11.07697 -11.01957 -10.94590 -10.90377 -10.44654 -10.41130 -10.37102 -10.30729 -10.12227 -9.39899 -8.88451 -8.63443 -7.88787 -7.84147 -6.32251 -3.71985 3.21423 3.23568 3.31510 3.38881 3.44106 3.99677 4.26406 4.74012 4.76943 4.78379 4.90160 5.00020 5.11965 5.18037 5.27092 5.38003 5.45181 5.47220 5.58277 5.60010 5.71978 5.75914 5.84405 5.85234 5.90444 5.91981 5.97109 6.02222 6.07592 6.17263 6.19472 6.21172 6.42254 6.43878 6.56700 6.78901 7.00214 7.64134 8.00775 8.15186 8.69828 8.84812 9.28507 9.64726 10.17349 10.85731 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017393 B = 0.005812 C = 0.004897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.466383 B = 4816.281897 C = 5716.555557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 C -0.150 4.150 4 C -0.130 4.130 5 C 0.137 3.863 6 H 0.094 0.906 7 C 0.445 3.555 8 O -0.577 6.577 9 N -0.563 5.563 10 C -0.293 4.293 11 H 0.100 0.900 12 C 0.021 3.979 13 N -0.904 5.904 14 Si 0.928 3.072 15 H -0.279 1.279 16 H -0.284 1.284 17 H -0.271 1.271 18 N -0.584 5.584 19 C 0.117 3.883 20 C -0.135 4.135 21 C -0.121 4.121 22 C -0.132 4.132 23 C 0.524 3.476 24 O -0.528 6.528 25 H 0.055 0.945 26 H 0.048 0.952 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.058 0.942 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.391 0.609 35 H 0.270 0.730 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.095 0.905 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.898 1.404 -17.684 17.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 C -0.207 4.207 4 C -0.168 4.168 5 C 0.029 3.971 6 H 0.112 0.888 7 C 0.230 3.770 8 O -0.460 6.460 9 N -0.200 5.200 10 C -0.423 4.423 11 H 0.118 0.882 12 C -0.180 4.180 13 N -0.546 5.546 14 Si 0.755 3.245 15 H -0.205 1.205 16 H -0.210 1.210 17 H -0.195 1.195 18 N -0.317 5.317 19 C -0.006 4.006 20 C -0.173 4.173 21 C -0.158 4.158 22 C -0.172 4.172 23 C 0.312 3.688 24 O -0.404 6.404 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.113 0.887 33 H 0.092 0.908 34 H 0.224 0.776 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.114 0.886 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.903 0.595 -17.067 17.101 hybrid contribution 0.167 0.298 0.886 0.950 sum -0.737 0.893 -16.181 16.222 Atomic orbital electron populations 1.21802 0.95491 1.01577 1.01290 1.21066 0.95468 0.95859 0.98631 1.21923 1.00944 0.96237 1.01576 1.22102 0.93721 1.03309 0.97712 1.20956 0.95991 0.93392 0.86755 0.88810 1.19937 0.85275 0.87004 0.84823 1.90494 1.44768 1.24341 1.86421 1.41769 1.49651 1.23688 1.04911 1.19673 1.31865 1.07622 0.83115 0.88175 1.25213 0.97318 0.96046 0.99408 1.69609 1.40536 1.16863 1.27576 0.85885 0.78294 0.79422 0.80852 1.20541 1.20965 1.19518 1.46866 1.51380 1.11353 1.22119 1.21386 0.93826 0.95883 0.89554 1.21891 0.98387 0.96948 1.00056 1.21635 0.98691 0.98418 0.97078 1.21633 1.03331 0.97900 0.94376 1.19735 0.80324 0.82013 0.86724 1.90681 1.36850 1.76512 1.36380 0.92584 0.93249 0.92863 0.91666 0.92756 0.93204 0.92332 0.88654 0.90761 0.77562 0.92027 0.92091 0.91102 0.90705 0.90254 0.91065 0.91409 0.88634 0.88962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.19 37.16 0.34 -1.45 16 2 C -0.09 -1.23 2.86 -90.62 -0.26 -1.49 16 3 C -0.15 -1.76 8.95 37.16 0.33 -1.43 16 4 C -0.13 -2.29 3.93 -26.73 -0.11 -2.39 16 5 C 0.14 2.56 2.28 -69.08 -0.16 2.40 16 6 H 0.09 1.55 5.99 -51.93 -0.31 1.24 16 7 C 0.45 11.16 6.36 -10.99 -0.07 11.09 16 8 O -0.58 -16.60 14.13 -15.23 -0.22 -16.81 16 9 N -0.56 -14.98 5.15 -10.96 -0.06 -15.03 16 10 C -0.29 -8.55 9.68 -14.93 -0.14 -8.69 16 11 H 0.10 3.09 7.16 -52.49 -0.38 2.72 16 12 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 13 N -0.90 -25.27 13.05 55.50 0.72 -24.55 16 14 Si 0.93 21.89 29.55 -169.99 -5.02 16.87 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 18 N -0.58 -9.71 1.98 -168.57 -0.33 -10.04 16 19 C 0.12 1.40 6.26 -4.39 -0.03 1.37 16 20 C -0.14 -1.35 6.03 -26.50 -0.16 -1.51 16 21 C -0.12 -1.17 6.03 -26.52 -0.16 -1.33 16 22 C -0.13 -1.79 6.03 -28.10 -0.17 -1.96 16 23 C 0.52 9.69 6.12 -11.88 -0.07 9.61 16 24 O -0.53 -12.35 12.84 -15.23 -0.20 -12.55 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.87 7.58 -51.93 -0.39 0.47 16 29 H 0.05 0.62 6.46 -51.93 -0.34 0.29 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.10 1.97 5.73 -51.93 -0.30 1.67 16 33 H 0.07 1.37 7.43 -51.93 -0.39 0.98 16 34 H 0.39 9.92 7.26 -40.82 -0.30 9.63 16 35 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 36 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 37 H 0.07 0.84 8.03 -51.93 -0.42 0.42 16 38 H 0.07 0.86 8.12 -51.93 -0.42 0.44 16 39 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.61 8.12 -51.93 -0.42 0.19 16 42 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 338.80 15.07 5.11 5.11 Total: -1.00 -34.84 338.80 -7.76 -42.60 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -7.02 Total: 9.69 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: -0.75 Total: 4.72 kcal Atomic # 7 Polarization: -49.96 SS G_CDS: 0.33 Total: -49.62 kcal Atomic # 8 Polarization: -28.95 SS G_CDS: -0.41 Total: -29.36 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.84 -7.76 -42.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087233653.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.808 kcal (2) G-P(sol) polarization free energy of solvation -34.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds