Wall clock time and date at job start Tue Mar 31 2020 02:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47015 * 2 1 4 4 C 1.53004 * 109.46647 * 119.99575 * 2 1 3 5 5 C 1.53002 * 109.46746 * 175.00189 * 4 2 1 6 6 H 1.09000 * 109.47312 * 55.00097 * 5 4 2 7 7 C 1.50701 * 109.47097 * 175.00196 * 5 4 2 8 8 O 1.21290 * 119.99962 * 119.99826 * 7 5 4 9 9 N 1.34776 * 119.99804 * 300.00079 * 7 5 4 10 10 C 1.37097 * 119.99645 * 179.97438 * 9 7 5 11 11 H 1.08001 * 120.00371 * 359.97438 * 10 9 7 12 12 C 1.38959 * 119.99717 * 180.02562 * 10 9 7 13 13 N 1.31408 * 120.00100 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99987 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47449 * 89.99463 * 14 12 10 16 16 H 1.48499 * 109.47094 * 209.99617 * 14 12 10 17 17 H 1.48505 * 109.47195 * 329.99498 * 14 12 10 18 18 N 1.46506 * 109.47035 * 294.99923 * 5 4 2 19 19 C 1.45754 * 117.94455 * 119.74266 * 18 5 4 20 20 C 1.53102 * 110.38699 * 160.74491 * 19 18 5 21 21 C 1.53337 * 108.52827 * 51.11210 * 20 19 18 22 22 C 1.53068 * 108.42642 * 292.31238 * 21 20 19 23 23 C 1.33347 * 117.95043 * 300.00051 * 18 5 4 24 24 O 1.21289 * 118.24430 * 2.20241 * 23 18 5 25 25 H 1.08997 * 109.47890 * 300.00106 * 1 2 3 26 26 H 1.09000 * 109.47070 * 60.00360 * 1 2 3 27 27 H 1.08999 * 109.47141 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47365 * 239.99899 * 2 1 3 29 29 H 1.09002 * 109.47291 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47240 * 299.99391 * 3 2 1 31 31 H 1.09006 * 109.47205 * 59.99755 * 3 2 1 32 32 H 1.08998 * 109.46791 * 55.00771 * 4 2 1 33 33 H 1.09000 * 109.47409 * 295.00094 * 4 2 1 34 34 H 0.96993 * 120.00049 * 359.97438 * 9 7 5 35 35 H 0.97001 * 120.00144 * 180.02562 * 13 12 10 36 36 H 1.09006 * 109.29764 * 281.23598 * 19 18 5 37 37 H 1.09004 * 109.30200 * 40.60617 * 19 18 5 38 38 H 1.08996 * 109.80145 * 291.32098 * 20 19 18 39 39 H 1.09007 * 109.67742 * 170.82729 * 20 19 18 40 40 H 1.09004 * 109.67261 * 172.57510 * 21 20 19 41 41 H 1.09000 * 109.67795 * 52.04491 * 21 20 19 42 42 H 1.09006 * 109.39727 * 288.76897 * 22 21 20 43 43 H 1.08999 * 109.33549 * 168.99061 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5647 -0.8310 1.1881 6 1 3.9953 0.1612 1.0529 7 6 4.0772 -1.4301 2.4725 8 8 4.7011 -2.4700 2.4500 9 7 3.8422 -0.8105 3.6460 10 6 4.3080 -1.3559 4.8144 11 1 4.8628 -2.2822 4.7945 12 6 4.0652 -0.7173 6.0245 13 7 3.3897 0.4096 6.0488 14 14 4.7004 -1.4599 7.6164 15 1 6.0616 -0.9375 7.8979 16 1 3.7897 -1.0946 8.7310 17 1 4.7548 -2.9382 7.4859 18 7 3.9479 -1.6872 0.0628 19 6 4.7803 -1.1077 -0.9839 20 6 5.4640 -2.2121 -1.7943 21 6 4.3975 -3.2177 -2.2443 22 6 3.8646 -3.9441 -1.0068 23 6 3.5089 -2.9463 0.0577 24 8 2.7837 -3.3050 0.9613 25 1 -0.3635 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6765 1.9563 0.8900 32 1 1.6053 -1.7197 1.2952 33 1 1.7515 -0.1582 2.1371 34 1 3.3436 0.0213 3.6639 35 1 3.2205 0.8556 6.8934 36 1 4.1591 -0.5030 -1.6448 37 1 5.5411 -0.4731 -0.5293 38 1 6.2061 -2.7179 -1.1766 39 1 5.9500 -1.7787 -2.6685 40 1 4.8399 -3.9392 -2.9312 41 1 3.5821 -2.6908 -2.7399 42 1 4.6297 -4.6214 -0.6271 43 1 2.9773 -4.5160 -1.2781 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087233653.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:05:46 Heat of formation + Delta-G solvation = -109.870670 kcal Electronic energy + Delta-G solvation = -24035.741922 eV Core-core repulsion = 20693.310363 eV Total energy + Delta-G solvation = -3342.431559 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.94937 -39.63369 -37.62340 -37.18065 -36.00231 -34.45403 -33.29903 -30.83115 -30.10283 -28.00002 -27.09846 -25.49659 -24.99095 -23.31983 -21.15099 -20.86322 -20.01341 -19.18275 -18.09220 -17.68142 -17.01347 -16.76349 -16.14552 -15.75761 -15.72891 -15.38819 -15.06478 -14.87127 -14.67999 -14.49824 -14.20283 -14.09343 -13.53411 -13.46132 -13.20265 -12.98141 -12.93694 -12.74853 -12.54519 -12.44301 -12.16750 -12.04275 -11.83557 -11.80692 -11.66911 -11.57262 -11.51875 -11.44543 -10.43519 -10.29904 -10.01255 -9.47280 -8.47686 -5.96438 1.34343 1.36691 1.50021 1.81784 2.04878 2.14884 2.29901 3.12478 3.26153 3.71915 3.89285 3.92781 3.94038 3.99242 4.01358 4.10271 4.17113 4.41269 4.52076 4.60294 4.60649 4.63963 4.76994 4.82647 4.88251 4.91219 4.98732 5.05899 5.08735 5.11414 5.14946 5.20056 5.31999 5.37204 5.39827 5.47106 5.52377 5.62988 5.98357 6.58109 6.69809 7.10970 7.44780 7.55050 8.11467 8.69729 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017393 B = 0.005812 C = 0.004897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.466383 B = 4816.281897 C = 5716.555557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.082 4.082 3 C -0.147 4.147 4 C -0.121 4.121 5 C 0.146 3.854 6 H 0.122 0.878 7 C 0.437 3.563 8 O -0.621 6.621 9 N -0.571 5.571 10 C -0.333 4.333 11 H 0.071 0.929 12 C -0.012 4.012 13 N -0.919 5.919 14 Si 0.992 3.008 15 H -0.266 1.266 16 H -0.267 1.267 17 H -0.279 1.279 18 N -0.581 5.581 19 C 0.103 3.897 20 C -0.131 4.131 21 C -0.110 4.110 22 C -0.129 4.129 23 C 0.509 3.491 24 O -0.592 6.592 25 H 0.049 0.951 26 H 0.077 0.923 27 H 0.040 0.960 28 H 0.074 0.926 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.395 0.605 35 H 0.278 0.722 36 H 0.096 0.904 37 H 0.072 0.928 38 H 0.052 0.948 39 H 0.119 0.881 40 H 0.099 0.901 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.561 2.919 -20.078 20.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.100 4.100 3 C -0.204 4.204 4 C -0.160 4.160 5 C 0.038 3.962 6 H 0.140 0.860 7 C 0.224 3.776 8 O -0.507 6.507 9 N -0.209 5.209 10 C -0.463 4.463 11 H 0.089 0.911 12 C -0.211 4.211 13 N -0.560 5.560 14 Si 0.816 3.184 15 H -0.191 1.191 16 H -0.192 1.192 17 H -0.204 1.204 18 N -0.312 5.312 19 C -0.019 4.019 20 C -0.169 4.169 21 C -0.147 4.147 22 C -0.169 4.169 23 C 0.299 3.701 24 O -0.472 6.472 25 H 0.068 0.932 26 H 0.095 0.905 27 H 0.059 0.941 28 H 0.093 0.907 29 H 0.077 0.923 30 H 0.095 0.905 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.228 0.772 35 H 0.088 0.912 36 H 0.114 0.886 37 H 0.091 0.909 38 H 0.071 0.929 39 H 0.137 0.863 40 H 0.118 0.882 41 H 0.103 0.897 42 H 0.106 0.894 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.552 2.163 -19.509 19.636 hybrid contribution 0.061 -0.183 1.632 1.643 sum -0.491 1.980 -17.877 17.993 Atomic orbital electron populations 1.21792 0.94686 1.01141 1.02379 1.21003 0.96104 0.96646 0.96251 1.21904 1.01202 0.94695 1.02561 1.21981 0.92705 1.01708 0.99579 1.20846 0.96684 0.94270 0.84410 0.86025 1.21138 0.83812 0.86269 0.86422 1.90448 1.46473 1.26272 1.87466 1.41824 1.50026 1.23927 1.05092 1.19586 1.33860 1.07728 0.85094 0.91139 1.26008 0.96898 0.96271 1.01956 1.69666 1.40234 1.17239 1.28853 0.84950 0.78536 0.77982 0.76952 1.19116 1.19201 1.20449 1.47057 1.51272 1.10821 1.22086 1.21849 0.94054 0.96999 0.88957 1.21929 0.97902 0.96321 1.00742 1.21645 0.99092 0.98705 0.95288 1.21669 1.03682 0.96840 0.94723 1.20737 0.79297 0.83023 0.87050 1.90656 1.39705 1.77775 1.39094 0.93154 0.90450 0.94128 0.90736 0.92314 0.90482 0.93122 0.92174 0.92484 0.77153 0.91244 0.88603 0.90934 0.92865 0.86263 0.88211 0.89722 0.89442 0.88088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.35 9.19 71.98 0.66 -2.69 16 2 C -0.08 -2.07 2.86 -10.79 -0.03 -2.10 16 3 C -0.15 -3.03 8.95 71.98 0.64 -2.38 16 4 C -0.12 -4.38 3.93 30.60 0.12 -4.26 16 5 C 0.15 5.56 2.28 44.25 0.10 5.66 16 6 H 0.12 3.91 5.99 -2.39 -0.01 3.90 16 7 C 0.44 23.02 6.36 87.66 0.56 23.58 16 8 O -0.62 -37.85 14.13 16.81 0.24 -37.61 16 9 N -0.57 -31.92 5.15 -306.98 -1.58 -33.50 16 10 C -0.33 -20.36 9.68 84.04 0.81 -19.55 16 11 H 0.07 4.65 7.16 -2.91 -0.02 4.62 16 12 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 13 N -0.92 -51.74 13.05 21.67 0.28 -51.46 16 14 Si 0.99 45.41 29.55 68.60 2.03 47.44 16 15 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 16 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 17 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 18 N -0.58 -19.08 1.98 -806.43 -1.59 -20.67 16 19 C 0.10 2.17 6.26 86.55 0.54 2.71 16 20 C -0.13 -2.18 6.03 30.74 0.19 -2.00 16 21 C -0.11 -1.75 6.03 30.73 0.19 -1.56 16 22 C -0.13 -3.41 6.03 29.70 0.18 -3.23 16 23 C 0.51 19.23 6.12 87.71 0.54 19.77 16 24 O -0.59 -29.40 12.84 16.81 0.22 -29.18 16 25 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.07 1.77 7.58 -2.39 -0.02 1.75 16 29 H 0.06 1.16 6.46 -2.39 -0.02 1.14 16 30 H 0.08 1.21 8.14 -2.39 -0.02 1.20 16 31 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 32 H 0.06 2.64 5.73 -2.39 -0.01 2.62 16 33 H 0.06 2.21 7.43 -2.39 -0.02 2.19 16 34 H 0.39 20.93 7.26 -92.71 -0.67 20.25 16 35 H 0.28 14.56 8.31 -92.71 -0.77 13.79 16 36 H 0.10 1.42 8.10 -2.38 -0.02 1.40 16 37 H 0.07 1.53 8.03 -2.38 -0.02 1.51 16 38 H 0.05 1.13 8.12 -2.39 -0.02 1.11 16 39 H 0.12 1.11 8.14 -2.38 -0.02 1.09 16 40 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 41 H 0.08 1.12 8.12 -2.39 -0.02 1.10 16 42 H 0.09 2.44 8.14 -2.38 -0.02 2.42 16 43 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -81.83 338.80 4.88 -76.96 By element: Atomic # 1 Polarization: 33.95 SS G_CDS: 0.33 Total: 34.28 kcal Atomic # 6 Polarization: 8.79 SS G_CDS: 4.96 Total: 13.75 kcal Atomic # 7 Polarization: -102.74 SS G_CDS: -2.89 Total: -105.63 kcal Atomic # 8 Polarization: -67.25 SS G_CDS: 0.45 Total: -66.79 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -81.83 4.88 -76.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087233653.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.915 kcal (2) G-P(sol) polarization free energy of solvation -81.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds