Wall clock time and date at job start Tue Mar 31 2020 02:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47086 * 2 1 4 4 C 1.53006 * 109.46721 * 119.99711 * 2 1 3 5 5 C 1.52999 * 109.47066 * 65.00228 * 4 2 1 6 6 H 1.09007 * 109.46896 * 304.99741 * 5 4 2 7 7 C 1.50699 * 109.47136 * 185.00171 * 5 4 2 8 8 O 1.21296 * 119.99592 * 240.00327 * 7 5 4 9 9 N 1.34773 * 120.00280 * 59.99316 * 7 5 4 10 10 C 1.37096 * 120.00033 * 180.02562 * 9 7 5 11 11 H 1.07995 * 120.00165 * 0.02562 * 10 9 7 12 12 C 1.38949 * 119.99819 * 180.02562 * 10 9 7 13 13 N 1.31409 * 120.00520 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99821 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47084 * 60.00432 * 14 12 10 16 16 H 1.48497 * 109.47144 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.47320 * 300.00300 * 14 12 10 18 18 N 1.46498 * 109.47294 * 64.99805 * 5 4 2 19 19 C 1.45753 * 117.94706 * 239.99978 * 18 5 4 20 20 C 1.52927 * 110.48908 * 160.92293 * 19 18 5 21 21 C 1.53348 * 108.67100 * 50.75080 * 20 19 18 22 22 C 1.53058 * 108.43797 * 292.48594 * 21 20 19 23 23 C 1.33353 * 117.94642 * 60.01847 * 18 5 4 24 24 O 1.21280 * 118.24584 * 2.24717 * 23 18 5 25 25 H 1.08995 * 109.46946 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47458 * 300.00556 * 1 2 3 27 27 H 1.09000 * 109.46747 * 60.00261 * 1 2 3 28 28 H 1.08997 * 109.47063 * 239.99811 * 2 1 3 29 29 H 1.09003 * 109.47121 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47114 * 299.99514 * 3 2 1 31 31 H 1.08997 * 109.47426 * 59.99424 * 3 2 1 32 32 H 1.08996 * 109.47158 * 304.99994 * 4 2 1 33 33 H 1.08994 * 109.46843 * 185.00301 * 4 2 1 34 34 H 0.96999 * 119.99686 * 0.02562 * 9 7 5 35 35 H 0.96993 * 120.00362 * 180.02562 * 13 12 10 36 36 H 1.08998 * 109.30227 * 40.61331 * 19 18 5 37 37 H 1.08998 * 109.30323 * 281.23362 * 19 18 5 38 38 H 1.08996 * 109.60496 * 170.50895 * 20 19 18 39 39 H 1.08997 * 109.60247 * 290.99757 * 20 19 18 40 40 H 1.08997 * 109.67264 * 52.20642 * 21 20 19 41 41 H 1.09000 * 109.67050 * 172.73216 * 21 20 19 42 42 H 1.08998 * 109.39718 * 288.75313 * 22 21 20 43 43 H 1.09003 * 109.32793 * 168.97375 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 1.6352 -2.1954 1.1881 6 1 0.5562 -2.2706 1.0528 7 6 2.0291 -2.8783 2.4724 8 8 2.8017 -3.8132 2.4499 9 7 1.5233 -2.4502 3.6460 10 6 1.8821 -3.0712 4.8144 11 1 2.5705 -3.9031 4.7945 12 6 1.3602 -2.6301 6.0242 13 7 0.5222 -1.6181 6.0485 14 14 1.8497 -3.4757 7.6163 15 1 3.3195 -3.3715 7.8005 16 1 1.1598 -2.8211 8.7569 17 1 1.4584 -4.9071 7.5573 18 7 2.3147 -2.8421 0.0628 19 6 1.4908 -3.4388 -0.9811 20 6 2.3060 -3.6342 -2.2601 21 6 3.6067 -4.3653 -1.9064 22 6 4.4705 -3.4320 -1.0548 23 6 3.6482 -2.8482 0.0579 24 8 4.2279 -2.3564 1.0029 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6053 -0.2617 2.1370 33 1 3.1262 -0.6443 1.2953 34 1 0.9053 -1.7028 3.6639 35 1 0.1581 -1.3100 6.8931 36 1 0.6442 -2.7847 -1.1899 37 1 1.1199 -4.4050 -0.6392 38 1 1.7335 -4.2295 -2.9713 39 1 2.5395 -2.6632 -2.6969 40 1 3.3777 -5.2694 -1.3423 41 1 4.1402 -4.6276 -2.8200 42 1 4.8581 -2.6272 -1.6793 43 1 5.3026 -3.9956 -0.6328 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087233654.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:05:48 Heat of formation + Delta-G solvation = -87.289796 kcal Electronic energy + Delta-G solvation = -24043.114731 eV Core-core repulsion = 20701.662351 eV Total energy + Delta-G solvation = -3341.452379 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.52129 -37.78322 -36.27637 -35.97613 -33.93103 -33.17519 -31.17291 -29.65623 -28.79687 -27.05334 -25.11723 -24.36299 -23.61782 -22.00543 -19.81221 -19.44014 -18.11328 -17.64237 -16.58825 -16.10507 -15.66411 -14.93093 -14.72775 -14.42257 -14.10301 -14.00046 -13.88302 -13.56334 -13.42214 -13.15868 -12.91080 -12.64024 -12.13542 -11.91641 -11.84785 -11.60373 -11.46140 -11.34911 -11.10313 -10.99007 -10.94486 -10.92582 -10.44825 -10.43833 -10.38912 -10.34216 -10.10496 -9.37463 -8.91042 -8.61083 -7.86792 -7.81536 -6.30660 -3.70347 3.21547 3.27172 3.31486 3.37307 3.43821 4.01523 4.27490 4.72489 4.75292 4.78260 4.90051 5.00397 5.11079 5.15761 5.29762 5.38658 5.43825 5.47916 5.54925 5.56726 5.70864 5.74728 5.82413 5.85896 5.87411 5.92054 5.96296 6.02589 6.07029 6.15141 6.18318 6.20470 6.41167 6.43850 6.55675 6.76321 6.98429 7.65412 8.00970 8.16679 8.71562 8.86060 9.30324 9.66547 10.19725 10.87348 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017605 B = 0.005801 C = 0.004877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.119119 B = 4825.560489 C = 5739.687224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.092 4.092 3 C -0.144 4.144 4 C -0.128 4.128 5 C 0.136 3.864 6 H 0.094 0.906 7 C 0.446 3.554 8 O -0.574 6.574 9 N -0.564 5.564 10 C -0.293 4.293 11 H 0.100 0.900 12 C 0.021 3.979 13 N -0.905 5.905 14 Si 0.929 3.071 15 H -0.274 1.274 16 H -0.285 1.285 17 H -0.275 1.275 18 N -0.584 5.584 19 C 0.114 3.886 20 C -0.132 4.132 21 C -0.123 4.123 22 C -0.131 4.131 23 C 0.521 3.479 24 O -0.524 6.524 25 H 0.053 0.947 26 H 0.058 0.942 27 H 0.049 0.951 28 H 0.065 0.935 29 H 0.052 0.948 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.391 0.609 35 H 0.270 0.730 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.090 0.910 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.043 1.750 -17.942 18.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.111 4.111 3 C -0.202 4.202 4 C -0.167 4.167 5 C 0.029 3.971 6 H 0.112 0.888 7 C 0.230 3.770 8 O -0.457 6.457 9 N -0.202 5.202 10 C -0.423 4.423 11 H 0.118 0.882 12 C -0.180 4.180 13 N -0.547 5.547 14 Si 0.756 3.244 15 H -0.200 1.200 16 H -0.210 1.210 17 H -0.201 1.201 18 N -0.317 5.317 19 C -0.009 4.009 20 C -0.169 4.169 21 C -0.160 4.160 22 C -0.171 4.171 23 C 0.308 3.692 24 O -0.399 6.399 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.084 0.916 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.109 0.891 34 H 0.224 0.776 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.108 0.892 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.282 1.446 -17.300 17.362 hybrid contribution -0.308 -0.031 0.863 0.917 sum -0.590 1.414 -16.437 16.508 Atomic orbital electron populations 1.21929 0.95578 1.01558 1.01627 1.21074 0.95457 0.95933 0.98612 1.21804 1.00950 0.96090 1.01333 1.22057 1.04214 0.92582 0.97811 1.20933 0.96608 0.92665 0.86911 0.88791 1.19916 0.85358 0.86908 0.84772 1.90502 1.37691 1.31109 1.86404 1.41762 1.41972 1.31521 1.04906 1.19619 1.25210 1.14278 0.83151 0.88249 1.25201 0.96671 0.96727 0.99376 1.69598 1.31362 1.26096 1.27635 0.85953 0.78742 0.79096 0.80614 1.19997 1.21029 1.20070 1.46865 1.05527 1.57289 1.22068 1.21368 0.93688 0.98507 0.87328 1.21845 0.96915 1.01397 0.96793 1.21636 0.95747 0.98821 0.99824 1.21614 0.98962 1.00184 0.96323 1.19759 0.81987 0.79761 0.87659 1.90711 1.69408 1.45308 1.34521 0.92757 0.92289 0.93172 0.91622 0.92882 0.93217 0.92560 0.90637 0.89082 0.77601 0.92001 0.91047 0.92045 0.90164 0.91150 0.90999 0.91100 0.89175 0.88676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 8.95 37.16 0.33 -1.40 16 2 C -0.09 -1.22 2.86 -90.62 -0.26 -1.48 16 3 C -0.14 -1.77 9.19 37.15 0.34 -1.42 16 4 C -0.13 -2.24 3.93 -26.73 -0.11 -2.34 16 5 C 0.14 2.56 2.28 -69.08 -0.16 2.40 16 6 H 0.09 1.55 5.99 -51.92 -0.31 1.24 16 7 C 0.45 11.23 6.33 -10.99 -0.07 11.16 16 8 O -0.57 -16.63 13.99 -16.39 -0.23 -16.86 16 9 N -0.56 -15.05 5.15 -10.97 -0.06 -15.11 16 10 C -0.29 -8.57 9.68 -14.93 -0.14 -8.72 16 11 H 0.10 3.08 7.16 -52.49 -0.38 2.70 16 12 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 13 N -0.90 -25.36 13.05 55.50 0.72 -24.63 16 14 Si 0.93 21.98 29.55 -169.99 -5.02 16.95 16 15 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 N -0.58 -9.71 1.98 -168.69 -0.33 -10.04 16 19 C 0.11 1.37 6.25 -4.48 -0.03 1.34 16 20 C -0.13 -1.20 6.02 -26.59 -0.16 -1.36 16 21 C -0.12 -1.26 6.03 -26.52 -0.16 -1.42 16 22 C -0.13 -1.75 6.03 -28.11 -0.17 -1.92 16 23 C 0.52 9.62 6.18 -11.87 -0.07 9.54 16 24 O -0.52 -12.35 12.75 -16.38 -0.21 -12.56 16 25 H 0.05 0.61 6.27 -51.93 -0.33 0.29 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.85 7.62 -51.93 -0.40 0.46 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 1.38 7.43 -51.93 -0.39 1.00 16 33 H 0.09 1.86 5.90 -51.93 -0.31 1.55 16 34 H 0.39 9.93 7.26 -40.82 -0.30 9.64 16 35 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 36 H 0.07 0.71 7.84 -51.93 -0.41 0.31 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 40 H 0.07 0.83 8.13 -51.93 -0.42 0.41 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 338.46 15.07 5.10 5.10 Total: -1.00 -35.11 338.46 -7.79 -42.89 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -7.01 Total: 9.39 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: -0.75 Total: 4.87 kcal Atomic # 7 Polarization: -50.12 SS G_CDS: 0.33 Total: -49.78 kcal Atomic # 8 Polarization: -28.99 SS G_CDS: -0.44 Total: -29.42 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -35.11 -7.79 -42.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087233654.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.396 kcal (2) G-P(sol) polarization free energy of solvation -35.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds