Wall clock time and date at job start Tue Mar 31 2020 02:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47200 * 2 1 4 4 H 1.09001 * 109.46839 * 304.99472 * 3 2 1 5 5 C 1.52998 * 109.47386 * 64.99626 * 3 2 1 6 6 C 1.50698 * 109.47024 * 184.99702 * 3 2 1 7 7 O 1.21281 * 120.00072 * 333.67564 * 6 3 2 8 8 N 1.34776 * 120.00363 * 153.67274 * 6 3 2 9 9 C 1.46924 * 120.63583 * 185.09719 * 8 6 3 10 10 C 1.53190 * 108.77629 * 126.36663 * 9 8 6 11 11 C 1.53045 * 109.30959 * 54.63879 * 10 9 8 12 12 C 1.53034 * 109.53957 * 298.63300 * 11 10 9 13 13 H 1.09008 * 109.49349 * 301.41555 * 12 11 10 14 14 C 1.50690 * 109.50057 * 181.34999 * 12 11 10 15 15 O 1.21292 * 120.00260 * 240.00221 * 14 12 11 16 16 N 1.34782 * 119.99803 * 59.99846 * 14 12 11 17 17 C 1.37096 * 119.99726 * 180.02562 * 16 14 12 18 18 H 1.08003 * 120.00452 * 0.02562 * 17 16 14 19 19 C 1.38959 * 120.00021 * 180.02562 * 17 16 14 20 20 N 1.31407 * 120.00155 * 180.02562 * 19 17 16 21 21 Si 1.86802 * 119.99485 * 359.97438 * 19 17 16 22 22 H 1.48505 * 109.47098 * 90.00439 * 21 19 17 23 23 H 1.48500 * 109.46890 * 209.99909 * 21 19 17 24 24 H 1.48496 * 109.47624 * 329.99919 * 21 19 17 25 25 C 1.46923 * 120.62713 * 4.81700 * 8 6 3 26 26 H 1.08993 * 109.47479 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47341 * 300.00853 * 1 2 3 28 28 H 1.09007 * 109.46662 * 59.99949 * 1 2 3 29 29 H 1.08998 * 109.47042 * 239.99546 * 2 1 3 30 30 H 1.09000 * 109.46421 * 119.99759 * 2 1 3 31 31 H 1.08995 * 109.46842 * 294.93163 * 5 3 2 32 32 H 1.09000 * 109.47243 * 54.93257 * 5 3 2 33 33 H 1.09005 * 109.47078 * 174.92821 * 5 3 2 34 34 H 1.08998 * 109.58704 * 246.15795 * 9 8 6 35 35 H 1.09004 * 109.58640 * 6.58217 * 9 8 6 36 36 H 1.09001 * 109.49881 * 174.58740 * 10 9 8 37 37 H 1.08991 * 109.50059 * 294.65536 * 10 9 8 38 38 H 1.09000 * 109.45757 * 58.65512 * 11 10 9 39 39 H 1.09008 * 109.45702 * 178.62338 * 11 10 9 40 40 H 0.96994 * 120.00316 * 0.02562 * 16 14 12 41 41 H 0.97004 * 119.99891 * 179.97438 * 20 19 17 42 42 H 1.09000 * 109.58784 * 353.42223 * 25 8 6 43 43 H 1.09002 * 109.58653 * 113.84344 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 1.6352 2.1266 1.3073 6 6 3.5419 1.4442 -0.1238 7 8 4.1834 0.4904 0.2631 8 7 4.1724 2.5057 -0.6644 9 6 5.6233 2.4775 -0.8942 10 6 5.8971 2.8267 -2.3604 11 6 5.2337 4.1648 -2.6945 12 6 3.7202 4.0483 -2.5003 13 1 3.3310 3.2572 -3.1413 14 6 3.0646 5.3563 -2.8611 15 8 2.4194 5.9607 -2.0308 16 7 3.1953 5.8545 -4.1066 17 6 2.5993 7.0447 -4.4348 18 1 2.0254 7.5834 -3.6952 19 6 2.7336 7.5582 -5.7190 20 7 2.1628 8.6993 -6.0335 21 14 3.7268 6.6270 -6.9980 22 1 2.8362 5.6928 -7.7325 23 1 4.3300 7.5902 -7.9538 24 1 4.8038 5.8577 -6.3246 25 6 3.4208 3.7107 -1.0408 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5140 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8900 31 1 0.5492 2.2059 1.3547 32 1 1.9938 1.5379 2.1516 33 1 2.0745 3.1235 1.3468 34 1 6.1099 3.2077 -0.2476 35 1 6.0082 1.4809 -0.6779 36 1 6.9724 2.9035 -2.5214 37 1 5.4879 2.0469 -3.0027 38 1 5.6259 4.9391 -2.0351 39 1 5.4476 4.4275 -3.7306 40 1 3.7110 5.3710 -4.7708 41 1 2.2568 9.0579 -6.9299 42 1 2.3530 3.5277 -0.9212 43 1 3.7242 4.5436 -0.4064 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000101516769.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:22:25 Heat of formation + Delta-G solvation = -92.610288 kcal Electronic energy + Delta-G solvation = -23157.236659 eV Core-core repulsion = 19815.553566 eV Total energy + Delta-G solvation = -3341.683093 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.51876 -38.85091 -36.93999 -35.49681 -34.13406 -32.96012 -31.72481 -31.15846 -29.68131 -26.01682 -25.55253 -24.72959 -23.19903 -22.05336 -20.42232 -19.31897 -18.74538 -18.37635 -17.30054 -16.13191 -15.76882 -15.38406 -14.97362 -14.75710 -14.55777 -14.42319 -14.07378 -13.56536 -13.46085 -13.08576 -12.95478 -12.83163 -12.56603 -12.49632 -12.23924 -12.05961 -11.80613 -11.68475 -11.37333 -11.26671 -11.07075 -10.90310 -10.81038 -10.79508 -10.64393 -10.54871 -10.04204 -9.66539 -9.57411 -8.75590 -8.48201 -8.26981 -6.39320 -3.90989 2.63388 2.96283 2.97169 3.01188 3.10170 3.60072 4.02966 4.30164 4.60859 4.67416 4.78065 4.81208 4.92295 4.95982 5.12450 5.17372 5.22223 5.27818 5.35291 5.36866 5.47450 5.53716 5.59806 5.71232 5.77452 5.80158 5.84663 5.87196 5.89696 5.92141 5.94142 6.03203 6.13655 6.21602 6.23976 6.35722 6.53447 7.40586 7.47633 8.05507 8.18196 8.48816 8.85414 9.33570 9.70973 10.73434 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020726 B = 0.004455 C = 0.004064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.616472 B = 6283.681860 C = 6888.312466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.104 4.104 3 C -0.115 4.115 4 H 0.096 0.904 5 C -0.143 4.143 6 C 0.523 3.477 7 O -0.550 6.550 8 N -0.611 5.611 9 C 0.109 3.891 10 C -0.132 4.132 11 C -0.113 4.113 12 C -0.117 4.117 13 H 0.087 0.913 14 C 0.455 3.545 15 O -0.578 6.578 16 N -0.582 5.582 17 C -0.308 4.308 18 H 0.121 0.879 19 C 0.044 3.956 20 N -0.877 5.877 21 Si 0.877 3.123 22 H -0.270 1.270 23 H -0.275 1.275 24 H -0.269 1.269 25 C 0.128 3.872 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.090 0.910 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.371 0.629 41 H 0.274 0.726 42 H 0.094 0.906 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.583 -14.864 7.836 17.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.142 4.142 3 C -0.136 4.136 4 H 0.114 0.886 5 C -0.200 4.200 6 C 0.311 3.689 7 O -0.428 6.428 8 N -0.343 5.343 9 C -0.013 4.013 10 C -0.171 4.171 11 C -0.152 4.152 12 C -0.139 4.139 13 H 0.105 0.895 14 C 0.241 3.759 15 O -0.462 6.462 16 N -0.220 5.220 17 C -0.437 4.437 18 H 0.138 0.862 19 C -0.159 4.159 20 N -0.517 5.517 21 Si 0.703 3.297 22 H -0.195 1.195 23 H -0.200 1.200 24 H -0.194 1.194 25 C 0.005 3.995 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.108 0.892 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.204 0.796 41 H 0.085 0.915 42 H 0.112 0.888 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.445 -14.773 8.432 17.355 hybrid contribution 0.791 -0.374 -1.422 1.670 sum 4.236 -15.147 7.010 17.219 Atomic orbital electron populations 1.21838 0.95340 1.01745 1.02205 1.21353 0.95608 0.94167 1.03060 1.21415 0.91856 0.99232 1.01133 0.88554 1.21783 1.02319 1.00563 0.95356 1.20699 0.90277 0.81442 0.76450 1.90644 1.68113 1.34870 1.49177 1.48226 1.08435 1.16035 1.61653 1.21602 0.80550 1.03041 0.96100 1.21930 1.01056 0.97814 0.96252 1.21563 0.93528 0.97458 1.02607 1.21466 0.96721 0.97915 0.97822 0.89527 1.19499 0.85819 0.87327 0.83288 1.90566 1.44796 1.61858 1.48959 1.42217 1.47401 1.21808 1.10550 1.19457 1.29379 0.96482 0.98364 0.86159 1.25046 0.97532 0.96119 0.97245 1.69616 1.42914 1.18181 1.20966 0.86711 0.80465 0.80228 0.82259 1.19521 1.20039 1.19442 1.21496 0.97080 0.86352 0.94524 0.92593 0.92301 0.92503 0.91855 0.91041 0.91066 0.92065 0.91852 0.91467 0.89196 0.90482 0.91477 0.90931 0.91190 0.79574 0.91493 0.88761 0.89993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.67 37.16 0.36 -0.99 16 2 C -0.10 -1.11 4.86 -26.73 -0.13 -1.24 16 3 C -0.12 -1.33 1.87 -91.77 -0.17 -1.50 16 4 H 0.10 1.09 6.40 -51.93 -0.33 0.76 16 5 C -0.14 -1.47 8.61 37.16 0.32 -1.15 16 6 C 0.52 7.28 6.79 -10.99 -0.07 7.21 16 7 O -0.55 -9.13 15.65 5.56 0.09 -9.04 16 8 N -0.61 -8.10 2.98 -173.04 -0.52 -8.62 16 9 C 0.11 1.31 6.42 -3.71 -0.02 1.28 16 10 C -0.13 -1.46 6.08 -26.61 -0.16 -1.62 16 11 C -0.11 -1.52 5.08 -26.69 -0.14 -1.66 16 12 C -0.12 -1.80 2.66 -91.88 -0.24 -2.05 16 13 H 0.09 1.24 8.14 -51.92 -0.42 0.82 16 14 C 0.46 9.64 7.11 -10.99 -0.08 9.56 16 15 O -0.58 -14.41 15.50 5.55 0.09 -14.32 16 16 N -0.58 -13.22 4.98 -10.96 -0.05 -13.27 16 17 C -0.31 -8.40 10.16 -14.93 -0.15 -8.55 16 18 H 0.12 3.75 7.39 -52.48 -0.39 3.36 16 19 C 0.04 1.17 5.50 -17.47 -0.10 1.08 16 20 N -0.88 -24.95 13.96 55.50 0.77 -24.17 16 21 Si 0.88 18.79 27.74 -169.99 -4.71 14.07 16 22 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 23 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 24 H -0.27 -5.22 6.52 56.52 0.37 -4.85 16 25 C 0.13 1.83 4.53 -3.93 -0.02 1.81 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.48 6.68 -51.93 -0.35 0.13 16 28 H 0.06 0.50 8.14 -51.92 -0.42 0.07 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.80 8.03 -51.93 -0.42 0.39 16 31 H 0.07 0.63 6.82 -51.93 -0.35 0.28 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.69 7.60 -51.93 -0.39 0.29 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.09 1.11 7.04 -51.93 -0.37 0.75 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.07 0.95 7.53 -51.92 -0.39 0.55 16 40 H 0.37 7.48 5.16 -40.82 -0.21 7.27 16 41 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 42 H 0.09 1.32 5.20 -51.93 -0.27 1.05 16 43 H 0.08 1.25 7.94 -51.93 -0.41 0.84 16 LS Contribution 338.23 15.07 5.10 5.10 Total: -1.00 -31.58 338.23 -6.70 -38.28 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -6.85 Total: 9.79 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -0.61 Total: 2.19 kcal Atomic # 7 Polarization: -46.27 SS G_CDS: 0.20 Total: -46.06 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: 0.17 Total: -23.36 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -4.71 Total: 14.07 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.58 -6.70 -38.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101516769.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.330 kcal (2) G-P(sol) polarization free energy of solvation -31.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds