Wall clock time and date at job start Tue Mar 31 2020 02:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47156 * 2 1 4 4 H 1.09000 * 109.47241 * 305.00908 * 3 2 1 5 5 C 1.53004 * 109.46722 * 65.00465 * 3 2 1 6 6 C 1.50701 * 109.47373 * 185.00073 * 3 2 1 7 7 O 1.21281 * 119.99898 * 344.68457 * 6 3 2 8 8 N 1.34773 * 119.99908 * 164.67648 * 6 3 2 9 9 C 1.46966 * 120.65740 * 354.54332 * 8 6 3 10 10 C 1.53189 * 108.88802 * 233.52808 * 9 8 6 11 11 C 1.53037 * 109.31442 * 305.44231 * 10 9 8 12 12 C 1.53037 * 109.53961 * 61.36378 * 11 10 9 13 13 H 1.08999 * 109.49760 * 58.58660 * 12 11 10 14 14 C 1.50698 * 109.50118 * 178.68715 * 12 11 10 15 15 O 1.21293 * 120.00324 * 119.83820 * 14 12 11 16 16 N 1.34780 * 119.99608 * 299.84063 * 14 12 11 17 17 C 1.37094 * 120.00157 * 179.97438 * 16 14 12 18 18 H 1.08010 * 119.99912 * 0.02562 * 17 16 14 19 19 C 1.38946 * 120.00511 * 179.97438 * 17 16 14 20 20 N 1.31416 * 119.99726 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00505 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46980 * 59.99959 * 21 19 17 23 23 H 1.48500 * 109.47484 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46977 * 300.00710 * 21 19 17 25 25 C 1.46926 * 120.63038 * 174.71476 * 8 6 3 26 26 H 1.08999 * 109.46943 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46591 * 299.98832 * 1 2 3 28 28 H 1.08994 * 109.47492 * 59.99366 * 1 2 3 29 29 H 1.09009 * 109.46566 * 240.00764 * 2 1 3 30 30 H 1.08994 * 109.47492 * 120.00634 * 2 1 3 31 31 H 1.08993 * 109.47346 * 293.59095 * 5 3 2 32 32 H 1.09001 * 109.47072 * 53.58719 * 5 3 2 33 33 H 1.08999 * 109.47403 * 173.58639 * 5 3 2 34 34 H 1.08997 * 109.46473 * 113.74293 * 9 8 6 35 35 H 1.08999 * 109.70926 * 353.46100 * 9 8 6 36 36 H 1.08997 * 109.49365 * 185.48743 * 10 9 8 37 37 H 1.08998 * 109.49607 * 65.39456 * 10 9 8 38 38 H 1.09005 * 109.45917 * 301.34537 * 11 10 9 39 39 H 1.08996 * 109.45163 * 181.38289 * 11 10 9 40 40 H 0.97001 * 120.00171 * 359.97438 * 16 14 12 41 41 H 0.96994 * 119.99872 * 179.97438 * 20 19 17 42 42 H 1.09007 * 109.58483 * 6.61422 * 25 8 6 43 43 H 1.08998 * 109.58971 * 246.32885 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 1.6353 2.1264 1.3075 6 6 3.5419 1.4443 -0.1238 7 8 4.1679 0.4244 0.0732 8 7 4.1894 2.5793 -0.4538 9 6 3.4407 3.7922 -0.8121 10 6 3.9339 4.2957 -2.1722 11 6 5.4516 4.4859 -2.1215 12 6 6.1262 3.1436 -1.8299 13 1 5.8559 2.4249 -2.6035 14 6 7.6221 3.3258 -1.8121 15 8 8.2525 3.0682 -0.8084 16 7 8.2593 3.7749 -2.9115 17 6 9.6200 3.9411 -2.8953 18 1 10.1815 3.7118 -2.0015 19 6 10.2771 4.4036 -4.0288 20 7 9.5941 4.6822 -5.1164 21 14 12.1311 4.6308 -4.0065 22 1 12.7858 3.3294 -3.7183 23 1 12.5845 5.1314 -5.3290 24 1 12.4968 5.6126 -2.9541 25 6 5.6579 2.6270 -0.4658 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8902 30 1 1.8934 -0.5139 0.8899 31 1 0.5506 2.2271 1.3443 32 1 1.9732 1.5253 2.1517 33 1 2.0938 3.1140 1.3580 34 1 3.6081 4.5591 -0.0559 35 1 2.3767 3.5633 -0.8711 36 1 3.4554 5.2474 -2.4030 37 1 3.6842 3.5662 -2.9426 38 1 5.7023 5.1970 -1.3343 39 1 5.8018 4.8676 -3.0806 40 1 7.7552 3.9805 -3.7143 41 1 10.0527 5.0054 -5.9076 42 1 6.0573 1.6269 -0.2971 43 1 6.0082 3.2976 0.3188 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000101516771.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:22:29 Heat of formation + Delta-G solvation = -98.734839 kcal Electronic energy + Delta-G solvation = -22865.155418 eV Core-core repulsion = 19523.206744 eV Total energy + Delta-G solvation = -3341.948674 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.41527 -38.62646 -36.81362 -35.54654 -34.00091 -32.84922 -31.19129 -30.99955 -29.74666 -26.07099 -25.29647 -24.77557 -23.30857 -21.83020 -20.64794 -18.93118 -18.72495 -17.91988 -17.19990 -16.18750 -15.65197 -15.46594 -14.76461 -14.59479 -14.32537 -14.29099 -13.95141 -13.76998 -13.46805 -13.32060 -12.82523 -12.61463 -12.56150 -12.36515 -12.20370 -11.87840 -11.73667 -11.52853 -11.18886 -11.11954 -11.06699 -10.91305 -10.77488 -10.70422 -10.44791 -10.33712 -10.19595 -9.54890 -9.52397 -8.60480 -8.29142 -7.98887 -6.43626 -3.84433 2.71021 3.04107 3.19095 3.25079 3.29998 3.86080 4.16755 4.38955 4.56190 4.67042 4.76264 4.93438 4.96789 5.05275 5.13538 5.16223 5.26673 5.26925 5.30581 5.37696 5.47342 5.55685 5.59937 5.66742 5.71138 5.78547 5.85727 5.90318 5.94041 6.05859 6.11305 6.17190 6.19839 6.33623 6.44320 6.55579 6.70402 7.51540 7.53562 8.03364 8.27817 8.57948 9.15172 9.51844 10.02798 10.73852 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.036951 B = 0.003437 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.580649 B = 8145.227519 C = 8390.029431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.106 4.106 3 C -0.111 4.111 4 H 0.093 0.907 5 C -0.143 4.143 6 C 0.516 3.484 7 O -0.540 6.540 8 N -0.611 5.611 9 C 0.104 3.896 10 C -0.134 4.134 11 C -0.111 4.111 12 C -0.110 4.110 13 H 0.084 0.916 14 C 0.447 3.553 15 O -0.595 6.595 16 N -0.557 5.557 17 C -0.302 4.302 18 H 0.103 0.897 19 C 0.024 3.976 20 N -0.901 5.901 21 Si 0.931 3.069 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.273 1.273 25 C 0.136 3.864 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.393 0.607 41 H 0.272 0.728 42 H 0.096 0.904 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.728 -0.742 5.770 20.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.144 4.144 3 C -0.132 4.132 4 H 0.111 0.889 5 C -0.201 4.201 6 C 0.304 3.696 7 O -0.417 6.417 8 N -0.344 5.344 9 C -0.019 4.019 10 C -0.172 4.172 11 C -0.149 4.149 12 C -0.133 4.133 13 H 0.102 0.898 14 C 0.232 3.768 15 O -0.480 6.480 16 N -0.192 5.192 17 C -0.431 4.431 18 H 0.121 0.879 19 C -0.178 4.178 20 N -0.542 5.542 21 Si 0.758 3.242 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.199 1.199 25 C 0.014 3.986 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.226 0.774 41 H 0.082 0.918 42 H 0.114 0.886 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -18.882 -1.385 6.353 19.971 hybrid contribution 0.686 0.427 -0.766 1.114 sum -18.196 -0.958 5.587 19.059 Atomic orbital electron populations 1.21829 0.95555 1.01813 1.01763 1.21363 0.95232 0.94304 1.03524 1.21369 0.92227 0.99203 1.00447 0.88887 1.21804 1.01846 1.00578 0.95854 1.20663 0.89979 0.82699 0.76292 1.90696 1.68916 1.31813 1.50258 1.48212 1.07485 1.11111 1.67612 1.21835 0.96028 0.87083 0.96942 1.21940 0.96807 1.01619 0.96835 1.21533 0.93897 0.96485 1.03031 1.21458 0.94890 0.98241 0.98709 0.89798 1.19648 0.87933 0.84307 0.84876 1.90529 1.67911 1.56382 1.33219 1.41864 1.08063 1.56915 1.12386 1.19688 0.82357 1.41272 0.99813 0.87929 1.25266 1.00637 0.97044 0.94873 1.69603 1.36773 1.45022 1.02795 0.85917 0.82115 0.78929 0.77268 1.19850 1.20948 1.19872 1.21336 0.77156 1.03814 0.96301 0.92546 0.92483 0.92780 0.91473 0.91028 0.91345 0.91936 0.92027 0.91240 0.89773 0.90471 0.91374 0.91325 0.90731 0.77369 0.91775 0.88604 0.90643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.67 37.16 0.36 -0.73 16 2 C -0.11 -1.05 4.73 -26.73 -0.13 -1.18 16 3 C -0.11 -1.10 1.87 -91.77 -0.17 -1.27 16 4 H 0.09 0.75 6.58 -51.93 -0.34 0.41 16 5 C -0.14 -1.16 8.54 37.16 0.32 -0.84 16 6 C 0.52 7.45 6.89 -10.99 -0.08 7.37 16 7 O -0.54 -10.11 15.51 5.56 0.09 -10.02 16 8 N -0.61 -8.51 2.98 -172.74 -0.51 -9.02 16 9 C 0.10 1.05 5.37 -3.69 -0.02 1.03 16 10 C -0.13 -1.43 6.08 -26.61 -0.16 -1.60 16 11 C -0.11 -1.63 5.08 -26.69 -0.14 -1.77 16 12 C -0.11 -2.00 2.68 -91.65 -0.25 -2.24 16 13 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 14 C 0.45 10.66 7.11 -10.98 -0.08 10.58 16 15 O -0.59 -16.34 15.49 5.55 0.09 -16.26 16 16 N -0.56 -14.16 5.17 -10.96 -0.06 -14.21 16 17 C -0.30 -8.45 9.68 -14.94 -0.14 -8.59 16 18 H 0.10 3.01 7.16 -52.48 -0.38 2.63 16 19 C 0.02 0.63 5.50 -17.47 -0.10 0.54 16 20 N -0.90 -24.42 13.05 55.50 0.72 -23.70 16 21 Si 0.93 21.10 29.55 -169.99 -5.02 16.08 16 22 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 25 C 0.14 2.39 5.07 -3.71 -0.02 2.37 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.36 6.71 -51.93 -0.35 0.01 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.75 8.14 -51.92 -0.42 0.32 16 30 H 0.07 0.79 8.09 -51.93 -0.42 0.37 16 31 H 0.07 0.41 6.89 -51.93 -0.36 0.06 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.48 7.07 -51.93 -0.37 0.11 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.63 5.34 -51.93 -0.28 0.35 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.07 1.14 7.54 -51.93 -0.39 0.75 16 40 H 0.39 9.54 7.31 -40.82 -0.30 9.24 16 41 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 42 H 0.10 1.95 7.00 -51.93 -0.36 1.59 16 43 H 0.08 1.37 7.95 -51.93 -0.41 0.96 16 LS Contribution 340.57 15.07 5.13 5.13 Total: -1.00 -32.71 340.57 -7.06 -39.77 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -6.89 Total: 8.56 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: -0.60 Total: 3.67 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: 0.15 Total: -46.93 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: 0.17 Total: -26.28 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.71 -7.06 -39.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101516771.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.963 kcal (2) G-P(sol) polarization free energy of solvation -32.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds