Wall clock time and date at job start Tue Mar 31 2020 02:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47041 * 2 1 4 4 H 1.09003 * 109.46999 * 54.99486 * 3 2 1 5 5 C 1.53005 * 109.47044 * 295.00295 * 3 2 1 6 6 C 1.50694 * 109.47398 * 174.99966 * 3 2 1 7 7 O 1.21283 * 119.99991 * 23.97114 * 6 3 2 8 8 N 1.34777 * 120.00107 * 203.97025 * 6 3 2 9 9 C 1.46927 * 120.62824 * 175.31659 * 8 6 3 10 10 C 1.53194 * 108.77340 * 233.62732 * 9 8 6 11 11 C 1.53040 * 109.31829 * 305.36833 * 10 9 8 12 12 C 1.53046 * 109.53588 * 61.36291 * 11 10 9 13 13 H 1.08994 * 109.49517 * 58.58975 * 12 11 10 14 14 C 1.50700 * 109.49543 * 178.68739 * 12 11 10 15 15 O 1.21294 * 119.99855 * 120.00125 * 14 12 11 16 16 N 1.34781 * 119.99793 * 299.99659 * 14 12 11 17 17 C 1.37090 * 119.99555 * 180.02562 * 16 14 12 18 18 H 1.08000 * 120.00754 * 359.97438 * 17 16 14 19 19 C 1.38958 * 119.99775 * 180.02562 * 17 16 14 20 20 N 1.31406 * 119.99793 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99906 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47165 * 89.99410 * 21 19 17 23 23 H 1.48502 * 109.46535 * 209.99413 * 21 19 17 24 24 H 1.48496 * 109.47041 * 329.99331 * 21 19 17 25 25 C 1.46925 * 120.63240 * 355.33907 * 8 6 3 26 26 H 1.08999 * 109.46655 * 299.99701 * 1 2 3 27 27 H 1.08995 * 109.46995 * 60.00158 * 1 2 3 28 28 H 1.09002 * 109.46258 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47375 * 240.00447 * 2 1 3 30 30 H 1.09000 * 109.47579 * 119.99442 * 2 1 3 31 31 H 1.08998 * 109.46892 * 186.26207 * 5 3 2 32 32 H 1.09000 * 109.46541 * 306.25939 * 5 3 2 33 33 H 1.08995 * 109.47144 * 66.26423 * 5 3 2 34 34 H 1.09003 * 109.58547 * 113.84661 * 9 8 6 35 35 H 1.08991 * 109.59118 * 353.41697 * 9 8 6 36 36 H 1.09003 * 109.49800 * 185.41434 * 10 9 8 37 37 H 1.09003 * 109.49345 * 65.32195 * 10 9 8 38 38 H 1.08998 * 109.46291 * 181.38350 * 11 10 9 39 39 H 1.08999 * 109.45664 * 301.36191 * 11 10 9 40 40 H 0.96997 * 119.99740 * 0.02562 * 16 14 12 41 41 H 0.97001 * 120.00026 * 180.02562 * 20 19 17 42 42 H 1.09004 * 109.58333 * 6.58427 * 25 8 6 43 43 H 1.08998 * 109.70564 * 246.22620 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6352 2.1266 -1.3074 6 6 3.5419 1.4444 0.1238 7 8 4.1802 0.4734 -0.2236 8 7 4.1757 2.5251 0.6206 9 6 5.6279 2.5046 0.8431 10 6 5.9102 2.9086 2.2936 11 6 5.2493 4.2587 2.5809 12 6 3.7346 4.1359 2.3997 13 1 3.3487 3.3698 3.0722 14 6 3.0817 5.4573 2.7141 15 8 2.4320 6.0300 1.8648 16 7 3.2196 6.0025 3.9389 17 6 2.6252 7.2043 4.2250 18 1 2.0468 7.7144 3.4689 19 6 2.7678 7.7668 5.4876 20 7 3.4719 7.1465 6.4075 21 14 1.9573 9.4040 5.8777 22 1 0.5917 9.1659 6.4102 23 1 2.7653 10.1269 6.8925 24 1 1.8707 10.2206 4.6405 25 6 3.4277 3.7459 0.9504 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 1.8934 -0.5137 -0.8900 30 1 1.8935 -0.5137 0.8900 31 1 2.0915 3.1152 -1.3566 32 1 1.9754 1.5269 -2.1516 33 1 0.5503 2.2249 -1.3452 34 1 6.1112 3.2098 0.1668 35 1 6.0112 1.5005 0.6623 36 1 6.9865 2.9908 2.4455 37 1 5.5038 2.1540 2.9670 38 1 5.4693 4.5602 3.6050 39 1 5.6378 5.0074 1.8905 40 1 3.7393 5.5446 4.6179 41 1 3.5712 7.5389 7.2890 42 1 2.3592 3.5606 0.8403 43 1 3.7292 4.5533 0.2831 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000101516772.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:22:30 Heat of formation + Delta-G solvation = -100.120743 kcal Electronic energy + Delta-G solvation = -23082.452744 eV Core-core repulsion = 19740.443973 eV Total energy + Delta-G solvation = -3342.008771 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.42515 -38.67344 -36.80972 -35.44657 -34.06097 -32.86361 -31.38652 -30.88951 -29.62247 -25.94055 -25.45564 -24.65008 -23.28803 -22.00347 -20.35767 -19.07516 -18.67849 -17.98579 -17.22884 -16.05295 -15.76235 -15.31077 -14.74157 -14.59955 -14.43194 -14.30499 -14.13193 -13.71472 -13.35324 -13.08254 -12.87863 -12.66081 -12.46505 -12.32353 -12.14143 -11.76841 -11.65594 -11.56381 -11.22900 -11.13652 -10.94927 -10.82331 -10.71778 -10.71150 -10.46163 -10.43964 -10.26728 -9.59126 -9.51016 -8.64856 -8.35283 -8.05191 -6.49208 -3.90361 2.69837 3.05175 3.12589 3.22514 3.27974 3.78564 4.10905 4.44218 4.69916 4.85265 4.87185 4.89760 5.04639 5.08339 5.21240 5.26826 5.31411 5.32758 5.40539 5.44806 5.53254 5.65777 5.71863 5.76400 5.82485 5.88384 5.92176 5.95735 5.98731 6.03231 6.10961 6.18725 6.22655 6.26557 6.41493 6.49988 6.63451 7.47845 7.48806 7.97170 8.24814 8.50932 9.09066 9.45433 9.95326 10.68057 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021375 B = 0.004163 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.614625 B = 6724.315206 C = 7482.671895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.104 4.104 3 C -0.115 4.115 4 H 0.096 0.904 5 C -0.143 4.143 6 C 0.522 3.478 7 O -0.551 6.551 8 N -0.610 5.610 9 C 0.110 3.890 10 C -0.132 4.132 11 C -0.111 4.111 12 C -0.113 4.113 13 H 0.085 0.915 14 C 0.445 3.555 15 O -0.597 6.597 16 N -0.555 5.555 17 C -0.303 4.303 18 H 0.104 0.896 19 C 0.025 3.975 20 N -0.899 5.899 21 Si 0.930 3.070 22 H -0.277 1.277 23 H -0.283 1.283 24 H -0.269 1.269 25 C 0.129 3.871 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.393 0.607 41 H 0.273 0.727 42 H 0.092 0.908 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.540 -10.643 -8.522 13.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.142 4.142 3 C -0.136 4.136 4 H 0.114 0.886 5 C -0.200 4.200 6 C 0.311 3.689 7 O -0.429 6.429 8 N -0.343 5.343 9 C -0.013 4.013 10 C -0.170 4.170 11 C -0.149 4.149 12 C -0.136 4.136 13 H 0.103 0.897 14 C 0.230 3.770 15 O -0.483 6.483 16 N -0.190 5.190 17 C -0.433 4.433 18 H 0.122 0.878 19 C -0.177 4.177 20 N -0.539 5.539 21 Si 0.757 3.243 22 H -0.203 1.203 23 H -0.209 1.209 24 H -0.194 1.194 25 C 0.006 3.994 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.107 0.893 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.227 0.773 41 H 0.083 0.917 42 H 0.110 0.890 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.497 -10.702 -9.062 14.032 hybrid contribution -0.020 0.719 0.947 1.189 sum 0.477 -9.983 -8.114 12.874 Atomic orbital electron populations 1.21835 0.95407 1.01707 1.02157 1.21351 0.95525 0.94205 1.03082 1.21403 0.91942 0.99190 1.01061 0.88552 1.21791 1.02272 1.00582 0.95391 1.20687 0.90235 0.81743 0.76264 1.90641 1.68310 1.34281 1.49717 1.48233 1.08405 1.14266 1.63380 1.21607 0.80450 1.02848 0.96383 1.21929 1.01006 0.97835 0.96246 1.21539 0.93475 0.96958 1.02972 1.21494 0.96726 0.97820 0.97510 0.89694 1.19622 0.86139 0.87346 0.83871 1.90522 1.45764 1.64531 1.47497 1.41879 1.45896 1.20270 1.10922 1.19731 1.28948 0.96706 0.97879 0.87821 1.25280 0.97196 0.99865 0.95402 1.69607 1.39851 1.39632 1.04848 0.85858 0.78825 0.81239 0.78395 1.20338 1.20877 1.19356 1.21579 0.96928 0.85606 0.95246 0.92513 0.92358 0.92617 0.91091 0.91794 0.91836 0.92100 0.91132 0.91584 0.89277 0.90569 0.91485 0.90734 0.91320 0.77323 0.91748 0.88964 0.90176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.67 37.16 0.36 -1.04 16 2 C -0.10 -1.15 4.83 -26.73 -0.13 -1.28 16 3 C -0.11 -1.38 1.86 -91.77 -0.17 -1.55 16 4 H 0.10 1.15 6.53 -51.93 -0.34 0.81 16 5 C -0.14 -1.54 8.52 37.16 0.32 -1.22 16 6 C 0.52 7.62 6.81 -10.99 -0.07 7.54 16 7 O -0.55 -9.48 15.61 5.55 0.09 -9.39 16 8 N -0.61 -8.57 2.97 -172.77 -0.51 -9.09 16 9 C 0.11 1.40 6.42 -3.71 -0.02 1.38 16 10 C -0.13 -1.60 6.08 -26.61 -0.16 -1.76 16 11 C -0.11 -1.63 5.08 -26.69 -0.14 -1.76 16 12 C -0.11 -1.87 2.68 -91.65 -0.25 -2.12 16 13 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 14 C 0.44 9.85 7.11 -10.98 -0.08 9.77 16 15 O -0.60 -15.12 15.50 5.55 0.09 -15.04 16 16 N -0.55 -13.43 5.17 -10.96 -0.06 -13.49 16 17 C -0.30 -8.15 9.68 -14.93 -0.14 -8.29 16 18 H 0.10 2.92 7.16 -52.49 -0.38 2.54 16 19 C 0.02 0.64 5.50 -17.47 -0.10 0.55 16 20 N -0.90 -23.74 13.05 55.50 0.72 -23.01 16 21 Si 0.93 20.42 29.55 -169.99 -5.02 15.40 16 22 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 23 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 24 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 25 C 0.13 1.95 4.38 -3.71 -0.02 1.93 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.49 6.71 -51.93 -0.35 0.14 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.83 8.04 -51.93 -0.42 0.41 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.72 7.34 -51.93 -0.38 0.34 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.65 6.88 -51.93 -0.36 0.30 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.09 1.17 7.03 -51.93 -0.37 0.81 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.07 1.14 7.53 -51.93 -0.39 0.74 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.39 9.18 7.30 -40.82 -0.30 8.88 16 41 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 42 H 0.09 1.36 5.14 -51.93 -0.27 1.10 16 43 H 0.08 1.28 7.95 -51.93 -0.41 0.87 16 LS Contribution 340.99 15.07 5.14 5.14 Total: -1.00 -30.35 340.99 -7.05 -37.41 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -6.89 Total: 9.93 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: -0.60 Total: 2.14 kcal Atomic # 7 Polarization: -45.74 SS G_CDS: 0.15 Total: -45.59 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: 0.17 Total: -24.43 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.35 -7.05 -37.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101516772.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.716 kcal (2) G-P(sol) polarization free energy of solvation -30.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds