Wall clock time and date at job start Tue Mar 31 2020 02:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.32995 * 120.00358 * 2 1 4 4 C 1.47097 * 120.00730 * 179.97438 * 3 2 1 5 5 O 1.21623 * 119.99306 * 0.02562 * 4 3 2 6 6 N 1.34771 * 120.00519 * 180.02562 * 4 3 2 7 7 C 1.46501 * 120.00308 * 180.02562 * 6 4 3 8 8 C 1.50700 * 109.46743 * 269.99953 * 7 6 4 9 9 H 1.07996 * 120.00425 * 0.02562 * 8 7 6 10 10 C 1.37879 * 119.99720 * 179.97438 * 8 7 6 11 11 N 1.31521 * 119.99959 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 119.99952 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47139 * 60.00228 * 12 10 8 14 14 H 1.48508 * 109.46701 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.47104 * 299.99875 * 12 10 8 16 16 C 1.46506 * 119.99594 * 0.02562 * 6 4 3 17 17 C 1.53002 * 109.47035 * 90.00195 * 16 6 4 18 18 N 1.46896 * 109.47243 * 179.97438 * 17 16 6 19 19 C 1.47016 * 111.00033 * 293.63224 * 18 17 16 20 20 C 1.53091 * 109.25820 * 177.60614 * 19 18 17 21 21 O 1.43011 * 109.25937 * 56.84922 * 20 19 18 22 22 C 1.43010 * 113.74221 * 301.33216 * 21 20 19 23 23 C 1.47015 * 111.00025 * 169.99888 * 18 17 16 24 24 H 1.09005 * 109.47183 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47285 * 299.99363 * 1 2 3 26 26 H 1.08996 * 109.47606 * 59.99945 * 1 2 3 27 27 H 1.08001 * 120.00415 * 180.02562 * 2 1 3 28 28 H 1.08001 * 119.99227 * 0.02562 * 3 2 1 29 29 H 1.09000 * 109.46877 * 29.99967 * 7 6 4 30 30 H 1.09000 * 109.47251 * 150.00072 * 7 6 4 31 31 H 0.96994 * 119.99936 * 179.97438 * 11 10 8 32 32 H 1.09004 * 109.47073 * 209.99877 * 16 6 4 33 33 H 1.09000 * 109.47212 * 329.99960 * 16 6 4 34 34 H 1.09004 * 109.46930 * 299.99770 * 17 16 6 35 35 H 1.09004 * 109.47059 * 59.99372 * 17 16 6 36 36 H 1.08999 * 109.50393 * 297.54669 * 19 18 17 37 37 H 1.09004 * 109.50238 * 57.67128 * 19 18 17 38 38 H 1.09000 * 109.50918 * 296.91251 * 20 19 18 39 39 H 1.09007 * 109.54039 * 176.80758 * 20 19 18 40 40 H 1.09007 * 109.50110 * 298.73488 * 22 21 20 41 41 H 1.08997 * 109.54718 * 178.62465 * 22 21 20 42 42 H 1.09001 * 109.50364 * 302.32316 * 23 18 17 43 43 H 1.08997 * 109.50638 * 62.41207 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6430 1.1518 0.0006 5 8 4.2510 0.0985 0.0006 6 7 4.3168 2.3190 0.0011 7 6 5.7818 2.3190 0.0011 8 6 6.2841 2.3184 1.4219 9 1 5.5823 2.3176 2.2428 10 6 7.6397 2.3178 1.6739 11 7 8.4943 2.3182 0.6743 12 14 8.2623 2.3163 3.4351 13 1 7.7669 1.1034 4.1342 14 1 9.7474 2.3152 3.4350 15 1 7.7677 3.5285 4.1360 16 6 3.5842 3.5877 0.0017 17 6 3.3293 4.0287 1.4444 18 7 2.5953 5.3012 1.4450 19 6 3.4212 6.3861 0.8955 20 6 2.5997 7.6774 0.8593 21 8 2.1254 7.9718 2.1759 22 6 1.3169 6.9366 2.7415 23 6 2.1254 5.6377 2.7968 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 2.0470 -0.9353 -0.0004 28 1 1.6319 2.0870 0.0004 29 1 6.1452 1.4292 -0.5131 30 1 6.1452 3.2092 -0.5123 31 1 9.4479 2.3182 0.8515 32 1 4.1733 4.3476 -0.5118 33 1 2.6318 3.4576 -0.5122 34 1 2.7402 3.2688 1.9579 35 1 4.2817 4.1588 1.9583 36 1 4.2988 6.5305 1.5257 37 1 3.7369 6.1270 -0.1152 38 1 1.7514 7.5504 0.1867 39 1 3.2248 8.4975 0.5057 40 1 0.4312 6.7880 2.1237 41 1 1.0142 7.2200 3.7495 42 1 1.4951 4.8324 3.1740 43 1 2.9822 5.7694 3.4576 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111893347.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:08 Heat of formation + Delta-G solvation = -56.481072 kcal Electronic energy + Delta-G solvation = -22984.615863 eV Core-core repulsion = 19644.499451 eV Total energy + Delta-G solvation = -3340.116413 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.64360 -38.93528 -36.25673 -34.69055 -34.04087 -32.62372 -31.23081 -29.55250 -28.38809 -26.82335 -25.75881 -24.03553 -23.14931 -22.05460 -20.31390 -20.18344 -18.11333 -16.97765 -16.52118 -16.18989 -16.15975 -15.56813 -15.09380 -14.90744 -14.66023 -14.45783 -13.98008 -13.69202 -13.24304 -13.19381 -13.14799 -12.86051 -12.33693 -12.23340 -12.00719 -11.93925 -11.46712 -11.39082 -11.26025 -11.07929 -11.00570 -10.75192 -10.63312 -10.41875 -10.11200 -9.77012 -9.60019 -9.04702 -8.94117 -8.45017 -8.31589 -7.67437 -6.06024 -4.10429 1.80474 3.28873 3.33933 3.36557 3.61235 3.82218 4.06774 4.16295 4.43509 4.84807 4.97736 5.00944 5.07198 5.12972 5.19253 5.25880 5.27896 5.33633 5.45670 5.52210 5.56406 5.57120 5.62947 5.75642 5.79076 5.83134 5.87005 5.92419 5.97225 6.15204 6.37486 6.63900 6.68172 6.98573 7.02821 7.09155 7.11860 7.43927 7.55032 7.90423 8.21634 8.42607 8.88629 9.11275 9.54414 11.02015 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.009422 B = 0.006793 C = 0.004460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2970.993849 B = 4121.093336 C = 6276.843995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.091 4.091 3 C -0.210 4.210 4 C 0.535 3.465 5 O -0.545 6.545 6 N -0.593 5.593 7 C 0.246 3.754 8 C -0.524 4.524 9 H 0.056 0.944 10 C 0.062 3.938 11 N -0.894 5.894 12 Si 0.895 3.105 13 H -0.276 1.276 14 H -0.285 1.285 15 H -0.278 1.278 16 C 0.123 3.877 17 C 0.035 3.965 18 N -0.536 5.536 19 C 0.012 3.988 20 C 0.065 3.935 21 O -0.389 6.389 22 C 0.066 3.934 23 C 0.017 3.983 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.123 0.877 28 H 0.124 0.876 29 H 0.044 0.956 30 H 0.031 0.969 31 H 0.264 0.736 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.047 0.953 37 H 0.090 0.910 38 H 0.058 0.942 39 H 0.096 0.904 40 H 0.057 0.943 41 H 0.094 0.906 42 H 0.084 0.916 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.815 7.482 -0.116 18.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.110 4.110 3 C -0.231 4.231 4 C 0.324 3.676 5 O -0.424 6.424 6 N -0.324 5.324 7 C 0.127 3.873 8 C -0.563 4.563 9 H 0.074 0.926 10 C -0.140 4.140 11 N -0.533 5.533 12 Si 0.722 3.278 13 H -0.202 1.202 14 H -0.211 1.211 15 H -0.204 1.204 16 C -0.002 4.002 17 C -0.093 4.093 18 N -0.262 5.262 19 C -0.116 4.116 20 C -0.012 4.012 21 O -0.307 6.307 22 C -0.011 4.011 23 C -0.111 4.111 24 H 0.083 0.917 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.140 0.860 28 H 0.141 0.859 29 H 0.062 0.938 30 H 0.049 0.951 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.108 0.892 38 H 0.076 0.924 39 H 0.114 0.886 40 H 0.076 0.924 41 H 0.112 0.888 42 H 0.102 0.898 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -16.610 7.060 -0.379 18.052 hybrid contribution 1.182 -0.089 1.480 1.896 sum -15.428 6.971 1.101 16.965 Atomic orbital electron populations 1.20936 0.92616 1.02600 1.02320 1.23623 0.95780 0.98791 0.92850 1.22935 0.94519 0.99173 1.06467 1.18454 0.87514 0.84100 0.77526 1.90748 1.70246 1.30943 1.50511 1.48110 1.09328 1.04037 1.70937 1.19296 0.72200 0.98369 0.97473 1.21382 0.91602 1.51071 0.92207 0.92567 1.24922 0.96715 0.95139 0.97237 1.69917 1.02325 1.50344 1.30702 0.86614 0.77695 0.78570 0.84881 1.20173 1.21097 1.20382 1.21343 0.96647 0.86710 0.95510 1.22693 0.97994 0.89843 0.98783 1.62236 1.39629 1.02952 1.21344 1.22860 0.95406 0.91647 1.01726 1.22674 0.97705 0.96485 0.84311 1.87963 1.69241 1.42259 1.31287 1.22635 0.92957 0.86612 0.98895 1.22755 0.99637 0.98373 0.90381 0.91749 0.91160 0.91162 0.85956 0.85852 0.93765 0.95132 0.92660 0.90844 0.90795 0.90900 0.92143 0.93434 0.89159 0.92420 0.88614 0.92434 0.88786 0.89787 0.93812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.24 10.18 36.00 0.37 -0.88 16 2 C -0.09 -1.27 9.84 -36.13 -0.36 -1.63 16 3 C -0.21 -3.35 8.86 -37.81 -0.33 -3.68 16 4 C 0.54 11.49 7.62 -12.67 -0.10 11.40 16 5 O -0.55 -14.13 15.80 5.26 0.08 -14.05 16 6 N -0.59 -12.62 2.46 -176.45 -0.43 -13.06 16 7 C 0.25 6.41 5.20 -5.19 -0.03 6.38 16 8 C -0.52 -14.70 8.92 -34.44 -0.31 -15.01 16 9 H 0.06 1.57 7.42 -52.49 -0.39 1.19 16 10 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 11 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 12 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 13 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 14 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 16 C 0.12 2.01 5.10 -4.04 -0.02 1.99 16 17 C 0.04 0.56 5.28 -3.83 -0.02 0.54 16 18 N -0.54 -7.12 4.73 -234.31 -1.11 -8.22 16 19 C 0.01 0.15 5.44 -3.71 -0.02 0.13 16 20 C 0.07 0.72 7.01 37.20 0.26 0.98 16 21 O -0.39 -4.90 10.83 -35.23 -0.38 -5.28 16 22 C 0.07 0.69 7.01 37.21 0.26 0.96 16 23 C 0.02 0.21 5.65 -3.71 -0.02 0.18 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.12 1.91 7.49 -52.49 -0.39 1.51 16 28 H 0.12 1.65 6.22 -52.49 -0.33 1.33 16 29 H 0.04 1.31 7.42 -51.93 -0.39 0.92 16 30 H 0.03 0.80 7.89 -51.93 -0.41 0.39 16 31 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.07 1.18 6.27 -51.93 -0.33 0.86 16 33 H 0.07 1.04 6.09 -51.93 -0.32 0.72 16 34 H 0.07 1.16 8.04 -51.93 -0.42 0.74 16 35 H 0.06 1.17 7.24 -51.93 -0.38 0.79 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.09 1.10 6.38 -51.93 -0.33 0.76 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.08 0.91 8.09 -51.93 -0.42 0.49 16 43 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 349.67 15.07 5.27 5.27 Total: -1.00 -33.13 349.67 -8.30 -41.42 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -7.03 Total: -0.27 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: -0.41 Total: 3.04 kcal Atomic # 7 Polarization: -46.27 SS G_CDS: -0.80 Total: -47.07 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: -0.30 Total: -19.33 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.13 -8.30 -41.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111893347.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.056 kcal (2) G-P(sol) polarization free energy of solvation -33.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds