Wall clock time and date at job start Tue Mar 31 2020 02:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47416 * 2 1 4 4 C 1.53005 * 109.46943 * 120.00029 * 2 1 3 5 5 N 1.46506 * 109.46735 * 174.99580 * 4 2 1 6 6 C 1.46498 * 119.99470 * 95.99222 * 5 4 2 7 7 C 1.50694 * 109.47379 * 85.40940 * 6 5 4 8 8 H 1.08004 * 120.00370 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00093 * 179.72303 * 7 6 5 10 10 N 1.31514 * 119.99787 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00215 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47029 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.47289 * 119.99846 * 11 9 7 14 14 H 1.48498 * 109.47555 * 240.00107 * 11 9 7 15 15 C 1.34771 * 120.00251 * 275.98655 * 5 4 2 16 16 O 1.21284 * 120.00143 * 5.30707 * 15 5 4 17 17 C 1.50705 * 120.00043 * 185.31055 * 15 5 4 18 18 H 1.08999 * 109.60091 * 42.67041 * 17 15 5 19 19 C 1.53345 * 109.60140 * 163.15793 * 17 15 5 20 20 C 1.53081 * 108.40882 * 187.29850 * 19 17 15 21 21 C 1.50183 * 109.89230 * 311.08593 * 20 19 17 22 22 O 1.21271 * 118.24764 * 197.60462 * 21 20 19 23 23 N 1.33360 * 123.50320 * 17.58168 * 21 20 19 24 24 C 1.45752 * 124.10821 * 357.79878 * 23 21 20 25 25 H 1.09005 * 109.47108 * 299.99803 * 1 2 3 26 26 H 1.08999 * 109.46857 * 59.99840 * 1 2 3 27 27 H 1.09001 * 109.47112 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46966 * 239.99494 * 2 1 3 29 29 H 1.09005 * 109.46821 * 60.00021 * 3 2 1 30 30 H 1.08999 * 109.47290 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.46826 * 300.00573 * 3 2 1 32 32 H 1.09007 * 109.47064 * 54.99974 * 4 2 1 33 33 H 1.08992 * 109.47402 * 294.99638 * 4 2 1 34 34 H 1.09001 * 109.47277 * 325.40609 * 6 5 4 35 35 H 1.09006 * 109.46785 * 205.40617 * 6 5 4 36 36 H 0.97009 * 119.99962 * 180.02562 * 10 9 7 37 37 H 1.08997 * 109.67572 * 307.01971 * 19 17 15 38 38 H 1.09005 * 109.67333 * 67.55911 * 19 17 15 39 39 H 1.08997 * 109.40204 * 190.96061 * 20 19 17 40 40 H 1.08990 * 109.33052 * 71.17466 * 20 19 17 41 41 H 0.96998 * 117.93879 * 177.77323 * 23 21 20 42 42 H 1.08993 * 109.29993 * 258.73604 * 24 23 21 43 43 H 1.09004 * 109.13014 * 139.25569 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5001 -0.8265 1.1905 6 6 4.3339 0.1650 1.8745 7 6 4.5159 -0.2393 3.3147 8 1 4.0561 -1.1441 3.6839 9 6 5.2738 0.5432 4.1599 10 7 5.8374 1.6427 3.7093 11 14 5.4989 0.0425 5.9454 12 1 4.7678 -1.2248 6.2000 13 1 6.9437 -0.1553 6.2257 14 1 4.9646 1.1090 6.8298 15 6 4.0761 -1.8354 0.5074 16 8 3.3905 -2.6000 -0.1379 17 6 5.5721 -2.0136 0.5454 18 1 5.9318 -1.8687 1.5640 19 6 5.9346 -3.4236 0.0637 20 6 7.4339 -3.6394 0.2849 21 6 8.2044 -2.4722 -0.2623 22 8 9.3913 -2.6132 -0.4672 23 7 7.6529 -1.2890 -0.5354 24 6 6.2338 -0.9939 -0.3825 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.1301 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6053 -1.7199 1.2952 33 1 1.7517 -0.1584 2.1370 34 1 3.8495 1.1404 1.8293 35 1 5.3072 0.2198 1.3867 36 1 6.3709 2.1931 4.3039 37 1 5.3698 -4.1622 0.6324 38 1 5.7022 -3.5201 -0.9969 39 1 7.7475 -4.5508 -0.2242 40 1 7.6310 -3.7349 1.3525 41 1 8.2328 -0.5804 -0.8555 42 1 5.7513 -1.0290 -1.3591 43 1 6.1201 0.0045 0.0399 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112010137.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:15:19 Heat of formation + Delta-G solvation = -95.549808 kcal Electronic energy + Delta-G solvation = -23700.510439 eV Core-core repulsion = 20358.699879 eV Total energy + Delta-G solvation = -3341.810560 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.39077 -39.11495 -36.48301 -35.68877 -34.08376 -32.76876 -32.39797 -29.83476 -27.67873 -26.83483 -25.73398 -24.51729 -23.23480 -22.36554 -20.24600 -19.32731 -18.17293 -17.11590 -16.61575 -16.44220 -15.83635 -15.59998 -15.08900 -14.58264 -14.56647 -14.19821 -13.88472 -13.83057 -13.25654 -13.01498 -12.91462 -12.46744 -12.36746 -12.03291 -11.68000 -11.62548 -11.52438 -11.39190 -11.10274 -11.01622 -10.89690 -10.72295 -10.71241 -10.56367 -10.30028 -10.14880 -9.78376 -9.53648 -9.14747 -8.88730 -8.60880 -7.79627 -6.28079 -4.35416 2.84659 3.14416 3.15794 3.25765 3.28738 3.51529 3.80281 4.25499 4.78150 4.86702 4.95583 5.04120 5.06042 5.22094 5.26578 5.41293 5.49491 5.54257 5.57487 5.75976 5.84379 5.89079 5.97424 5.98748 5.99128 6.12613 6.20561 6.22723 6.31030 6.37252 6.43455 6.54096 6.69615 6.74677 6.93946 7.07572 7.42767 7.51204 7.66300 7.94752 8.23327 8.39817 8.68288 8.87792 9.33210 10.78188 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.010088 B = 0.008044 C = 0.005229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2774.965606 B = 3480.228935 C = 5353.280202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.111 4.111 3 C -0.145 4.145 4 C 0.127 3.873 5 N -0.589 5.589 6 C 0.226 3.774 7 C -0.541 4.541 8 H 0.062 0.938 9 C 0.067 3.933 10 N -0.888 5.888 11 Si 0.894 3.106 12 H -0.272 1.272 13 H -0.282 1.282 14 H -0.282 1.282 15 C 0.524 3.476 16 O -0.567 6.567 17 C -0.124 4.124 18 H 0.120 0.880 19 C -0.100 4.100 20 C -0.135 4.135 21 C 0.522 3.478 22 O -0.570 6.570 23 N -0.712 5.712 24 C 0.118 3.882 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.044 0.956 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.042 0.958 35 H 0.044 0.956 36 H 0.265 0.735 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.100 0.900 40 H 0.102 0.898 41 H 0.400 0.600 42 H 0.065 0.935 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.218 -2.705 -6.493 8.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.131 4.131 3 C -0.202 4.202 4 C 0.004 3.996 5 N -0.318 5.318 6 C 0.107 3.893 7 C -0.580 4.580 8 H 0.080 0.920 9 C -0.137 4.137 10 N -0.526 5.526 11 Si 0.721 3.279 12 H -0.196 1.196 13 H -0.208 1.208 14 H -0.208 1.208 15 C 0.311 3.689 16 O -0.448 6.448 17 C -0.145 4.145 18 H 0.138 0.862 19 C -0.138 4.138 20 C -0.175 4.175 21 C 0.310 3.690 22 O -0.450 6.450 23 N -0.363 5.363 24 C -0.007 4.007 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.075 0.925 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.235 0.765 42 H 0.084 0.916 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.014 -3.165 -6.766 8.480 hybrid contribution 0.317 0.353 1.156 1.250 sum -3.698 -2.813 -5.609 7.283 Atomic orbital electron populations 1.21748 0.95365 1.01429 1.01391 1.21482 0.95272 0.96777 0.99558 1.21873 1.01906 0.95508 1.00903 1.21357 0.80620 1.00327 0.97297 1.48225 1.06583 1.27296 1.49721 1.19738 0.90365 0.87235 0.92005 1.21520 1.32298 1.09355 0.94785 0.92012 1.24924 0.95148 0.94704 0.98899 1.69907 1.32826 1.13790 1.36124 0.86502 0.78090 0.78746 0.84545 1.19634 1.20794 1.20825 1.20059 0.89288 0.80562 0.79022 1.90607 1.65008 1.45754 1.43440 1.21594 0.93766 0.96085 1.03098 0.86240 1.21462 0.93843 0.95806 1.02732 1.21676 0.95417 0.96787 1.03627 1.20204 0.87701 0.84294 0.76836 1.90719 1.16510 1.83499 1.54246 1.45392 1.09994 1.13620 1.67246 1.21482 0.80115 0.99892 0.99177 0.92742 0.93016 0.92855 0.91089 0.92676 0.91976 0.93671 0.91566 0.90214 0.93990 0.93817 0.92496 0.90107 0.90736 0.88173 0.87966 0.76503 0.91638 0.88558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.19 37.16 0.34 -1.39 16 2 C -0.11 -1.64 3.08 -90.62 -0.28 -1.92 16 3 C -0.14 -2.09 8.35 37.16 0.31 -1.78 16 4 C 0.13 2.17 4.76 -4.04 -0.02 2.15 16 5 N -0.59 -11.01 2.18 -175.05 -0.38 -11.39 16 6 C 0.23 4.76 3.99 -5.20 -0.02 4.74 16 7 C -0.54 -13.00 9.02 -34.44 -0.31 -13.31 16 8 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 9 C 0.07 1.66 5.46 -17.82 -0.10 1.57 16 10 N -0.89 -23.05 13.29 55.43 0.74 -22.31 16 11 Si 0.89 19.76 29.54 -169.99 -5.02 14.74 16 12 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 13 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 14 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 15 C 0.52 9.63 6.81 -10.99 -0.07 9.55 16 16 O -0.57 -11.37 15.70 5.55 0.09 -11.28 16 17 C -0.12 -2.01 1.75 -91.63 -0.16 -2.17 16 18 H 0.12 2.17 7.20 -51.93 -0.37 1.80 16 19 C -0.10 -1.43 4.65 -26.51 -0.12 -1.55 16 20 C -0.14 -1.83 6.03 -28.09 -0.17 -2.00 16 21 C 0.52 8.40 7.71 -11.87 -0.09 8.31 16 22 O -0.57 -11.03 17.78 5.56 0.10 -10.93 16 23 N -0.71 -10.37 5.45 -61.39 -0.33 -10.71 16 24 C 0.12 1.72 6.21 -4.49 -0.03 1.70 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.07 1.15 7.95 -51.93 -0.41 0.73 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.99 6.27 -51.93 -0.33 0.66 16 31 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 1.15 7.69 -51.93 -0.40 0.75 16 33 H 0.08 1.37 8.03 -51.93 -0.42 0.96 16 34 H 0.04 0.94 6.49 -51.93 -0.34 0.60 16 35 H 0.04 0.93 4.23 -51.93 -0.22 0.71 16 36 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 37 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.07 1.06 8.12 -51.93 -0.42 0.63 16 39 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.40 5.32 8.80 -40.82 -0.36 4.96 16 42 H 0.07 0.90 8.11 -51.93 -0.42 0.48 16 43 H 0.10 1.48 5.73 -51.93 -0.30 1.19 16 LS Contribution 342.14 15.07 5.16 5.16 Total: -1.00 -28.51 342.14 -7.29 -35.81 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -6.91 Total: 7.04 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: -0.72 Total: 3.88 kcal Atomic # 7 Polarization: -44.43 SS G_CDS: 0.02 Total: -44.41 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: 0.19 Total: -22.21 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.74 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -28.51 -7.29 -35.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112010137.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.745 kcal (2) G-P(sol) polarization free energy of solvation -28.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds