Wall clock time and date at job start Tue Mar 31 2020 02:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46997 * 2 1 4 4 C 1.53000 * 109.46727 * 239.99931 * 2 1 3 5 5 C 1.50695 * 109.47076 * 119.99654 * 2 1 3 6 6 O 1.21286 * 120.00262 * 7.70868 * 5 2 1 7 7 N 1.34779 * 119.99789 * 187.43062 * 5 2 1 8 8 C 1.46928 * 120.62929 * 174.21410 * 7 5 2 9 9 C 1.53618 * 108.54464 * 126.36896 * 8 7 5 10 10 C 1.53040 * 109.23987 * 54.85615 * 9 8 7 11 11 C 1.53038 * 109.53918 * 298.51205 * 10 9 8 12 12 H 1.08998 * 109.49970 * 301.41174 * 11 10 9 13 13 C 1.50703 * 109.49957 * 181.31486 * 11 10 9 14 14 O 1.21291 * 120.00326 * 240.16315 * 13 11 10 15 15 N 1.34779 * 119.99819 * 60.16153 * 13 11 10 16 16 C 1.37093 * 119.99907 * 180.02562 * 15 13 11 17 17 H 1.07995 * 120.00441 * 359.97438 * 16 15 13 18 18 C 1.38953 * 120.00012 * 180.02562 * 16 15 13 19 19 N 1.31409 * 119.99999 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00105 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47036 * 89.99752 * 20 18 16 22 22 H 1.48499 * 109.46886 * 209.99803 * 20 18 16 23 23 H 1.48497 * 109.46860 * 329.99679 * 20 18 16 24 24 C 1.46922 * 120.63307 * 354.49863 * 7 5 2 25 25 H 1.09005 * 109.46857 * 300.00219 * 1 2 3 26 26 H 1.09002 * 109.47144 * 60.00239 * 1 2 3 27 27 H 1.08998 * 109.47489 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47220 * 189.51511 * 3 2 1 29 29 H 1.09006 * 109.46963 * 309.51073 * 3 2 1 30 30 H 1.08999 * 109.47398 * 69.50945 * 3 2 1 31 31 H 1.09002 * 109.47282 * 312.61866 * 4 2 1 32 32 H 1.08993 * 109.47309 * 72.63100 * 4 2 1 33 33 H 1.09009 * 109.46408 * 192.62265 * 4 2 1 34 34 H 1.09001 * 109.58702 * 246.20677 * 8 7 5 35 35 H 1.09007 * 109.58588 * 6.62589 * 8 7 5 36 36 H 1.08998 * 109.63638 * 294.86904 * 9 8 7 37 37 H 1.09004 * 109.45965 * 174.74054 * 9 8 7 38 38 H 1.09005 * 109.46216 * 178.49124 * 10 9 8 39 39 H 1.08999 * 109.46168 * 58.53001 * 10 9 8 40 40 H 0.97003 * 120.00015 * 0.02562 * 15 13 11 41 41 H 0.97001 * 120.00343 * 180.02562 * 19 18 16 42 42 H 1.08999 * 109.58397 * 353.36929 * 24 7 5 43 43 H 1.08997 * 109.58945 * 113.65164 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0323 -0.7103 1.2305 6 8 1.2531 -1.2917 1.9557 7 7 3.3482 -0.7043 1.5220 8 6 3.8386 -1.2821 2.7807 9 6 4.9320 -2.3102 2.4531 10 6 6.0158 -1.6408 1.6048 11 6 5.4062 -1.1506 0.2895 12 1 4.9679 -1.9935 -0.2448 13 6 6.4807 -0.5204 -0.5589 14 8 6.3872 0.6424 -0.8909 15 7 7.5455 -1.2490 -0.9486 16 6 8.5231 -0.6756 -1.7198 17 1 8.4399 0.3598 -2.0155 18 6 9.6207 -1.4268 -2.1220 19 7 9.7218 -2.6868 -1.7627 20 14 10.9525 -0.6457 -3.1736 21 1 11.9931 -0.0536 -2.2951 22 1 11.5683 -1.6811 -4.0419 23 1 10.3547 0.4183 -4.0196 24 6 4.3188 -0.1143 0.5901 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 3.1166 1.4473 -0.1699 29 1 1.5446 2.0030 -0.7929 30 1 1.8219 1.9050 0.9626 31 1 1.5049 -1.6635 -1.3687 32 1 1.8718 -0.0944 -2.1248 33 1 3.1066 -0.9199 -1.1441 34 1 4.2517 -0.4927 3.4087 35 1 3.0170 -1.7738 3.3017 36 1 4.4982 -3.1422 1.8984 37 1 5.3718 -2.6803 3.3793 38 1 6.8069 -2.3600 1.3927 39 1 6.4321 -0.7937 2.1500 40 1 7.6201 -2.1790 -0.6833 41 1 10.4881 -3.2112 -2.0432 42 1 3.8141 0.1646 -0.3349 43 1 4.7684 0.7698 1.0420 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126673172.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:36 Heat of formation + Delta-G solvation = -79.955110 kcal Electronic energy + Delta-G solvation = -23608.665177 eV Core-core repulsion = 20267.530854 eV Total energy + Delta-G solvation = -3341.134323 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.75011 -38.66746 -36.74155 -35.86176 -34.05550 -32.71569 -31.27980 -30.82454 -27.38220 -27.27057 -25.75646 -25.36663 -23.24574 -22.41648 -20.49495 -19.05623 -18.60457 -17.96544 -16.63987 -16.20727 -15.60190 -15.19176 -14.74061 -14.68027 -14.36184 -14.23763 -13.90720 -13.69127 -13.49086 -12.96349 -12.71631 -12.59728 -12.33050 -12.19523 -12.14126 -11.87870 -11.66969 -11.56708 -11.19247 -11.16843 -11.07322 -10.97801 -10.76603 -10.63440 -10.44470 -10.29042 -10.12744 -9.59143 -9.42340 -8.62911 -8.34544 -8.05245 -6.49202 -3.90410 2.70755 3.07152 3.12486 3.22510 3.27936 3.78387 4.10948 4.38562 4.73711 4.82490 4.85143 4.90450 5.04719 5.08461 5.19716 5.26739 5.32169 5.42878 5.53064 5.57274 5.63970 5.67075 5.72780 5.78361 5.83290 5.85025 5.93722 5.98267 6.03982 6.08461 6.13233 6.18064 6.22387 6.29551 6.45709 6.51212 6.65210 7.48085 7.50381 7.97109 8.25781 8.50757 9.08965 9.45377 9.95106 10.68036 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.025373 B = 0.004420 C = 0.004013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.251049 B = 6333.051673 C = 6976.259110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.086 4.086 3 C -0.161 4.161 4 C -0.156 4.156 5 C 0.527 3.473 6 O -0.550 6.550 7 N -0.608 5.608 8 C 0.109 3.891 9 C -0.131 4.131 10 C -0.111 4.111 11 C -0.114 4.114 12 H 0.084 0.916 13 C 0.445 3.555 14 O -0.597 6.597 15 N -0.555 5.555 16 C -0.303 4.303 17 H 0.104 0.896 18 C 0.025 3.975 19 N -0.898 5.898 20 Si 0.930 3.070 21 H -0.277 1.277 22 H -0.283 1.283 23 H -0.269 1.269 24 C 0.110 3.890 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.084 0.916 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.089 0.911 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.393 0.607 41 H 0.273 0.727 42 H 0.114 0.886 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.939 1.660 5.109 13.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.089 4.089 3 C -0.218 4.218 4 C -0.213 4.213 5 C 0.316 3.684 6 O -0.428 6.428 7 N -0.340 5.340 8 C -0.014 4.014 9 C -0.170 4.170 10 C -0.149 4.149 11 C -0.136 4.136 12 H 0.103 0.897 13 C 0.230 3.770 14 O -0.483 6.483 15 N -0.189 5.189 16 C -0.433 4.433 17 H 0.122 0.878 18 C -0.177 4.177 19 N -0.539 5.539 20 Si 0.757 3.243 21 H -0.203 1.203 22 H -0.209 1.209 23 H -0.193 1.193 24 C -0.012 4.012 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.103 0.897 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.108 0.892 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.227 0.773 41 H 0.083 0.917 42 H 0.132 0.868 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.248 1.976 5.226 13.462 hybrid contribution 0.981 -0.342 -0.361 1.100 sum -11.267 1.634 4.865 12.381 Atomic orbital electron populations 1.21648 0.92124 1.02648 1.01722 1.20760 0.97707 0.96593 0.93809 1.22338 1.03454 0.93498 1.02529 1.22157 1.02466 1.00640 0.95999 1.20608 0.81579 0.79690 0.86572 1.90637 1.55343 1.44803 1.52061 1.48140 1.06271 1.59066 1.20532 1.21709 0.97550 0.96401 0.85718 1.21988 0.96210 0.98188 1.00568 1.21538 0.97715 1.00911 0.94784 1.21518 0.96072 0.99148 0.96898 0.89732 1.19615 0.84388 0.87405 0.85571 1.90517 1.79335 1.17234 1.61220 1.41883 1.18511 1.13136 1.45420 1.19728 0.98704 0.98077 1.26740 0.87805 1.25279 0.98810 0.95417 0.98234 1.69607 1.31214 1.07234 1.45867 0.85861 0.80323 0.78625 0.79521 1.20348 1.20880 1.19348 1.22176 0.89343 0.95273 0.94400 0.92332 0.92091 0.91958 0.89709 0.91459 0.92360 0.91987 0.91066 0.90677 0.91551 0.89240 0.91445 0.90671 0.90775 0.91344 0.77326 0.91746 0.86807 0.90363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.39 7.75 37.16 0.29 -1.10 16 2 C -0.09 -1.05 0.75 -155.66 -0.12 -1.17 16 3 C -0.16 -1.84 7.97 37.16 0.30 -1.54 16 4 C -0.16 -1.85 8.10 37.16 0.30 -1.55 16 5 C 0.53 7.82 6.46 -10.99 -0.07 7.75 16 6 O -0.55 -9.60 15.40 5.55 0.09 -9.51 16 7 N -0.61 -8.57 2.95 -172.51 -0.51 -9.08 16 8 C 0.11 1.39 6.47 -3.49 -0.02 1.37 16 9 C -0.13 -1.61 6.10 -26.39 -0.16 -1.78 16 10 C -0.11 -1.64 5.07 -26.69 -0.14 -1.78 16 11 C -0.11 -1.89 2.51 -91.65 -0.23 -2.12 16 12 H 0.08 1.36 7.97 -51.93 -0.41 0.94 16 13 C 0.44 9.79 7.11 -10.98 -0.08 9.71 16 14 O -0.60 -14.94 15.50 5.55 0.09 -14.85 16 15 N -0.55 -13.38 5.17 -10.96 -0.06 -13.44 16 16 C -0.30 -8.11 9.68 -14.93 -0.14 -8.25 16 17 H 0.10 2.91 7.16 -52.49 -0.38 2.53 16 18 C 0.02 0.64 5.50 -17.47 -0.10 0.55 16 19 N -0.90 -23.70 13.05 55.50 0.72 -22.98 16 20 Si 0.93 20.38 29.55 -169.99 -5.02 15.36 16 21 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 22 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 23 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 24 C 0.11 1.66 2.60 -3.71 -0.01 1.65 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.74 8.01 -51.93 -0.42 0.32 16 28 H 0.08 1.07 4.68 -51.93 -0.24 0.83 16 29 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 30 H 0.06 0.65 8.11 -51.93 -0.42 0.23 16 31 H 0.06 0.71 8.08 -51.93 -0.42 0.29 16 32 H 0.07 0.75 8.08 -51.93 -0.42 0.33 16 33 H 0.07 1.00 4.93 -51.92 -0.26 0.74 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.09 1.19 7.00 -51.93 -0.36 0.83 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.07 1.14 7.54 -51.93 -0.39 0.75 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.39 9.17 7.31 -40.82 -0.30 8.87 16 41 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 42 H 0.11 1.69 2.58 -51.93 -0.13 1.55 16 43 H 0.08 1.25 7.93 -51.93 -0.41 0.83 16 LS Contribution 333.69 15.07 5.03 5.03 Total: -1.00 -30.14 333.69 -6.50 -36.64 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -6.66 Total: 11.10 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -0.18 Total: 1.74 kcal Atomic # 7 Polarization: -45.66 SS G_CDS: 0.16 Total: -45.50 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: 0.17 Total: -24.36 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.14 -6.50 -36.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126673172.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.311 kcal (2) G-P(sol) polarization free energy of solvation -30.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds