Wall clock time and date at job start Tue Mar 31 2020 02:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 110.33192 * 2 1 4 4 C 1.54482 * 110.46385 * 237.68693 * 2 1 3 5 5 C 1.54507 * 104.06489 * 217.13922 * 4 2 1 6 6 C 1.54484 * 104.05949 * 0.02562 * 5 4 2 7 7 H 1.09006 * 110.46105 * 265.09716 * 6 5 4 8 8 C 1.50695 * 110.37241 * 142.80971 * 6 5 4 9 9 O 1.21279 * 120.00078 * 248.16087 * 8 6 5 10 10 N 1.34781 * 120.00332 * 68.16310 * 8 6 5 11 11 C 1.46503 * 120.00085 * 180.02562 * 10 8 6 12 12 C 1.53035 * 109.45925 * 154.99942 * 11 10 8 13 13 C 1.53198 * 109.33853 * 181.40078 * 12 11 10 14 14 N 1.46931 * 108.77053 * 305.34533 * 13 12 11 15 15 C 1.36934 * 120.62746 * 233.58525 * 14 13 12 16 16 H 1.07998 * 120.00350 * 27.69174 * 15 14 13 17 17 C 1.38818 * 120.00071 * 207.68722 * 15 14 13 18 18 N 1.31620 * 119.99342 * 17.37025 * 17 15 14 19 19 Si 1.86795 * 120.00018 * 197.36882 * 17 15 14 20 20 H 1.48501 * 109.47045 * 90.00300 * 19 17 15 21 21 H 1.48505 * 109.46933 * 210.00082 * 19 17 15 22 22 H 1.48491 * 109.47501 * 330.00079 * 19 17 15 23 23 C 1.46923 * 118.73939 * 53.61014 * 14 13 12 24 24 C 1.53114 * 109.49881 * 275.04933 * 11 10 8 25 25 O 1.44418 * 110.37537 * 122.25216 * 2 1 3 26 26 H 1.09000 * 109.46836 * 299.20020 * 1 2 3 27 27 H 1.09001 * 109.47218 * 59.20154 * 1 2 3 28 28 H 1.09000 * 109.47129 * 179.20285 * 1 2 3 29 29 H 1.09004 * 110.51131 * 335.78703 * 4 2 1 30 30 H 1.08998 * 110.51127 * 98.36031 * 4 2 1 31 31 H 1.08998 * 110.51364 * 241.35774 * 5 4 2 32 32 H 1.09000 * 110.51086 * 118.64447 * 5 4 2 33 33 H 0.97004 * 119.99604 * 359.97438 * 10 8 6 34 34 H 1.08996 * 109.45104 * 35.02865 * 11 10 8 35 35 H 1.08996 * 109.50305 * 61.43192 * 12 11 10 36 36 H 1.08999 * 109.49650 * 301.36129 * 12 11 10 37 37 H 1.08992 * 109.58883 * 65.13140 * 13 12 11 38 38 H 1.09001 * 109.58276 * 185.41931 * 13 12 11 39 39 H 0.97004 * 119.99493 * 180.02562 * 18 17 15 40 40 H 1.09006 * 109.58575 * 66.17336 * 23 14 13 41 41 H 1.08997 * 109.58439 * 186.60116 * 23 14 13 42 42 H 1.08995 * 109.48659 * 58.67545 * 24 11 10 43 43 H 1.08992 * 109.51550 * 298.60030 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9088 1.0221 0.0000 4 6 2.0702 -0.7737 -1.2232 5 6 3.3208 -1.5032 -0.6838 6 6 3.3880 -1.0845 0.8017 7 1 4.0519 -0.2291 0.9268 8 6 3.8546 -2.2382 1.6514 9 8 3.0910 -2.7627 2.4342 10 7 5.1206 -2.6874 1.5415 11 6 5.5741 -3.8095 2.3671 12 6 6.7404 -4.5154 1.6718 13 6 7.1895 -5.7091 2.5206 14 7 7.4939 -5.2362 3.8780 15 6 8.7053 -5.5076 4.4559 16 1 9.5784 -5.6529 3.8371 17 6 8.8111 -5.5958 5.8372 18 7 7.7309 -5.7619 6.5706 19 14 10.4865 -5.4789 6.6550 20 1 10.7848 -4.0590 6.9716 21 1 10.4821 -6.2752 7.9084 22 1 11.5245 -6.0095 5.7351 23 6 6.4738 -4.4672 4.6035 24 6 6.0327 -3.2874 3.7315 25 8 2.0329 -0.7225 1.1449 26 1 -0.3633 0.5014 0.8971 27 1 -0.3634 0.5262 -0.8827 28 1 -0.3633 -1.0276 -0.0143 29 1 1.3313 -1.4928 -1.5769 30 1 2.3427 -0.0836 -2.0217 31 1 4.2139 -1.1736 -1.2146 32 1 3.2003 -2.5830 -0.7708 33 1 5.7313 -2.2682 0.9151 34 1 4.7535 -4.5135 2.5050 35 1 7.5705 -3.8186 1.5559 36 1 6.4203 -4.8665 0.6908 37 1 6.3904 -6.4492 2.5621 38 1 8.0798 -6.1569 2.0790 39 1 7.8048 -5.8232 7.5359 40 1 5.6162 -5.1060 4.8149 41 1 6.8933 -4.0941 5.5378 42 1 5.2084 -2.7646 4.2166 43 1 6.8693 -2.6020 3.5967 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130482783.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:40 Heat of formation + Delta-G solvation = -69.399993 kcal Electronic energy + Delta-G solvation = -22777.104620 eV Core-core repulsion = 19436.428001 eV Total energy + Delta-G solvation = -3340.676619 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.39777 -38.84072 -37.15488 -34.42128 -32.58901 -32.43671 -31.62577 -30.03126 -29.46969 -26.94726 -24.84771 -23.00761 -22.22682 -21.78215 -21.36838 -20.17098 -19.27550 -17.35848 -16.93075 -16.56142 -16.25838 -15.44539 -14.90738 -14.54720 -14.36637 -14.08344 -13.75456 -13.56996 -13.48025 -13.01121 -12.71537 -12.66138 -12.53611 -12.35989 -12.03715 -11.74223 -11.49341 -11.20164 -11.11796 -11.06181 -10.90515 -10.73620 -10.38605 -10.22374 -10.13577 -10.05259 -9.75160 -9.71781 -9.34494 -8.70797 -8.41288 -6.68586 -5.77395 -3.20382 2.72788 2.99587 3.38836 3.45382 3.46885 3.84943 4.23729 4.41418 4.50238 4.57100 4.71894 4.83710 5.01913 5.09781 5.18130 5.31804 5.36053 5.41537 5.44202 5.46126 5.56119 5.63476 5.67616 5.75819 5.82869 5.88082 6.08483 6.23998 6.35039 6.43301 6.55668 6.61844 6.65529 6.78984 6.92446 6.95413 7.39019 7.67808 7.72424 7.80570 8.41432 8.45936 9.21756 9.85162 10.41780 11.31070 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.042251 B = 0.003254 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.554082 B = 8602.335361 C = 8879.747304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.065 3.935 3 H 0.070 0.930 4 C -0.149 4.149 5 C -0.144 4.144 6 C 0.057 3.943 7 H 0.092 0.908 8 C 0.514 3.486 9 O -0.519 6.519 10 N -0.722 5.722 11 C 0.152 3.848 12 C -0.138 4.138 13 C 0.149 3.851 14 N -0.593 5.593 15 C -0.255 4.255 16 H 0.066 0.934 17 C 0.002 3.998 18 N -0.901 5.901 19 Si 0.903 3.097 20 H -0.288 1.288 21 H -0.291 1.291 22 H -0.279 1.279 23 C 0.173 3.827 24 C -0.147 4.147 25 O -0.341 6.341 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.394 0.606 34 H 0.082 0.918 35 H 0.063 0.937 36 H 0.055 0.945 37 H 0.020 0.980 38 H 0.058 0.942 39 H 0.254 0.746 40 H 0.021 0.979 41 H 0.090 0.910 42 H 0.053 0.947 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.897 11.867 -17.440 22.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.007 3.993 3 H 0.088 0.912 4 C -0.187 4.187 5 C -0.182 4.182 6 C -0.004 4.004 7 H 0.109 0.891 8 C 0.298 3.702 9 O -0.393 6.393 10 N -0.374 5.374 11 C 0.049 3.951 12 C -0.178 4.178 13 C 0.021 3.979 14 N -0.315 5.315 15 C -0.385 4.385 16 H 0.084 0.916 17 C -0.197 4.197 18 N -0.545 5.545 19 Si 0.733 3.267 20 H -0.215 1.215 21 H -0.218 1.218 22 H -0.205 1.205 23 C 0.047 3.953 24 C -0.187 4.187 25 O -0.259 6.259 26 H 0.083 0.917 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.227 0.773 34 H 0.100 0.900 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.038 0.962 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.039 0.961 41 H 0.108 0.892 42 H 0.072 0.928 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.592 11.380 -16.465 22.195 hybrid contribution 1.261 0.420 -0.003 1.330 sum -8.330 11.800 -16.469 21.906 Atomic orbital electron populations 1.21792 0.92910 1.03181 1.02454 1.23065 0.95733 0.95404 0.85052 0.91189 1.23009 0.97513 0.99827 0.98335 1.22899 0.99250 1.02311 0.93744 1.22859 0.87003 0.96580 0.93967 0.89061 1.20116 0.82397 0.84274 0.83405 1.90742 1.54074 1.57636 1.36853 1.46234 1.11764 1.36252 1.43152 1.21068 0.96643 0.86775 0.90636 1.22335 0.97008 1.00050 0.98409 1.20833 0.98020 0.92303 0.86716 1.44112 1.14900 1.60258 1.12278 1.19185 0.85675 1.43786 0.89815 0.91596 1.25064 0.96940 1.00388 0.97280 1.70045 1.27150 1.52251 1.05022 0.86281 0.83863 0.77637 0.78919 1.21463 1.21762 1.20453 1.20766 0.90883 0.89019 0.94617 1.22580 0.99671 1.00894 0.95586 1.89303 1.24967 1.74234 1.37413 0.91656 0.91132 0.91596 0.90248 0.90231 0.89607 0.90023 0.77254 0.90032 0.91823 0.92643 0.96209 0.92321 0.93557 0.96116 0.89194 0.92826 0.92642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.53 37.16 0.35 -0.82 16 2 C 0.07 0.60 3.92 -25.95 -0.10 0.50 16 3 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 4 C -0.15 -1.11 6.63 -25.16 -0.17 -1.27 16 5 C -0.14 -1.22 6.62 -25.16 -0.17 -1.39 16 6 C 0.06 0.67 3.71 -27.11 -0.10 0.57 16 7 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 8 C 0.51 8.05 7.03 -10.99 -0.08 7.97 16 9 O -0.52 -10.80 16.22 -13.62 -0.22 -11.02 16 10 N -0.72 -10.13 5.08 -53.73 -0.27 -10.40 16 11 C 0.15 2.67 2.42 -67.85 -0.16 2.50 16 12 C -0.14 -2.27 5.55 -26.61 -0.15 -2.41 16 13 C 0.15 3.05 6.51 -3.70 -0.02 3.03 16 14 N -0.59 -14.88 2.99 -172.32 -0.52 -15.39 16 15 C -0.26 -6.98 9.59 -15.06 -0.14 -7.13 16 16 H 0.07 1.76 7.89 -52.49 -0.41 1.34 16 17 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 18 N -0.90 -26.52 11.19 55.49 0.62 -25.90 16 19 Si 0.90 21.74 29.59 -169.99 -5.03 16.71 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 C 0.17 4.28 5.31 -3.71 -0.02 4.27 16 24 C -0.15 -2.99 5.66 -26.57 -0.15 -3.14 16 25 O -0.34 -4.74 10.61 -54.41 -0.58 -5.32 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 29 H 0.08 0.58 7.87 -51.93 -0.41 0.18 16 30 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.78 7.86 -51.93 -0.41 0.37 16 33 H 0.39 4.15 8.60 -40.82 -0.35 3.80 16 34 H 0.08 1.63 7.58 -51.93 -0.39 1.24 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 1.16 7.94 -51.93 -0.41 0.74 16 39 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 40 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.09 2.48 6.04 -51.93 -0.31 2.16 16 42 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 43 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 342.29 15.07 5.16 5.16 Total: -1.00 -33.61 342.29 -9.16 -42.77 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -7.33 Total: 0.74 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: -0.99 Total: 2.65 kcal Atomic # 7 Polarization: -51.52 SS G_CDS: -0.17 Total: -51.69 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -0.80 Total: -16.33 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.03 Total: 16.71 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.61 -9.16 -42.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130482783.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.631 kcal (2) G-P(sol) polarization free energy of solvation -33.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds