Wall clock time and date at job start Tue Mar 31 2020 02:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46604 * 2 1 4 4 N 1.46502 * 109.46664 * 174.90656 * 3 2 1 5 5 C 1.37102 * 119.99667 * 269.46306 * 4 3 2 6 6 H 1.08001 * 119.99611 * 181.79189 * 5 4 3 7 7 C 1.38951 * 119.99999 * 1.78896 * 5 4 3 8 8 N 1.31407 * 119.99975 * 26.65037 * 7 5 4 9 9 Si 1.86801 * 119.99706 * 206.64866 * 7 5 4 10 10 H 1.48496 * 109.47304 * 90.00269 * 9 7 5 11 11 H 1.48505 * 109.46858 * 210.00018 * 9 7 5 12 12 H 1.48498 * 109.47421 * 329.99842 * 9 7 5 13 13 C 1.34779 * 120.00111 * 89.47017 * 4 3 2 14 14 O 1.21287 * 119.99947 * 4.05854 * 13 4 3 15 15 C 1.50699 * 119.99695 * 183.78575 * 13 4 3 16 16 H 1.09000 * 109.47555 * 35.79789 * 15 13 4 17 17 C 1.52997 * 109.47115 * 275.79374 * 15 13 4 18 18 C 1.53009 * 109.46959 * 177.74424 * 17 15 13 19 19 N 1.46504 * 109.46999 * 155.79231 * 15 13 4 20 20 C 1.46759 * 124.35237 * 240.00201 * 19 15 13 21 21 C 1.54476 * 105.47410 * 197.01650 * 20 19 15 22 22 C 1.54630 * 101.76520 * 334.58299 * 21 20 19 23 23 C 1.34422 * 124.34519 * 59.70027 * 19 15 13 24 24 O 1.21285 * 124.94554 * 359.57274 * 23 19 15 25 25 H 1.08999 * 109.47278 * 300.00087 * 1 2 3 26 26 H 1.08999 * 109.47329 * 60.00505 * 1 2 3 27 27 H 1.09004 * 109.46525 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47278 * 239.99913 * 2 1 3 29 29 H 1.08999 * 109.47329 * 119.99495 * 2 1 3 30 30 H 1.09001 * 109.47525 * 54.90633 * 3 2 1 31 31 H 1.08997 * 109.47169 * 294.89905 * 3 2 1 32 32 H 0.97003 * 119.99707 * 180.02562 * 8 7 5 33 33 H 1.08996 * 109.47291 * 297.73889 * 17 15 13 34 34 H 1.08994 * 109.47535 * 57.74576 * 17 15 13 35 35 H 1.08998 * 109.46763 * 179.97438 * 18 17 15 36 36 H 1.08996 * 109.46682 * 299.99838 * 18 17 15 37 37 H 1.08994 * 109.47321 * 60.00038 * 18 17 15 38 38 H 1.09002 * 110.24395 * 316.01571 * 20 19 15 39 39 H 1.08997 * 110.24784 * 78.01326 * 20 19 15 40 40 H 1.09007 * 110.97279 * 92.69850 * 21 20 19 41 41 H 1.08998 * 110.97278 * 216.46526 * 21 20 19 42 42 H 1.09001 * 110.48500 * 143.47340 * 22 21 20 43 43 H 1.08996 * 110.48759 * 265.98605 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.4998 1.4444 0.1226 5 6 4.0834 1.4915 1.3623 6 1 5.1593 1.5221 1.4518 7 6 3.2908 1.5000 2.5035 8 7 2.0944 0.9571 2.4766 9 14 3.9260 2.2830 4.0760 10 1 3.5460 3.7183 4.1029 11 1 3.3318 1.5917 5.2483 12 1 5.4051 2.1616 4.1271 13 6 4.2690 1.3999 -0.9832 14 8 3.7549 1.4327 -2.0812 15 6 5.7682 1.3156 -0.8552 16 1 6.0253 0.7000 0.0068 17 6 6.3439 2.7208 -0.6683 18 6 7.8599 2.6302 -0.4822 19 7 6.3289 0.7155 -2.0684 20 6 7.1128 -0.5249 -2.0926 21 6 7.8389 -0.5271 -3.4560 22 6 6.9043 0.3584 -4.3124 23 6 6.1865 1.2273 -3.3032 24 8 5.5739 2.2397 -3.5692 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.6040 1.9821 0.8408 31 1 1.7530 1.9293 -0.9321 32 1 1.5410 0.9633 3.2732 33 1 6.1214 3.3246 -1.5481 34 1 5.8967 3.1826 0.2119 35 1 8.2700 3.6313 -0.3495 36 1 8.0824 2.0264 0.3976 37 1 8.3071 2.1685 -1.3624 38 1 7.8381 -0.5287 -1.2789 39 1 6.4534 -1.3894 -2.0150 40 1 8.8297 -0.0805 -3.3711 41 1 7.9012 -1.5363 -3.8632 42 1 7.4853 0.9706 -5.0022 43 1 6.1904 -0.2576 -4.8590 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170608821.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:28:37 Heat of formation + Delta-G solvation = -60.053032 kcal Electronic energy + Delta-G solvation = -24177.843306 eV Core-core repulsion = 20837.572001 eV Total energy + Delta-G solvation = -3340.271304 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.15883 -38.26700 -35.75683 -35.18648 -34.15155 -32.18449 -31.36617 -30.59831 -27.26798 -26.98405 -25.50178 -24.08383 -21.71821 -21.59207 -20.64044 -19.40936 -18.48733 -17.10328 -16.67789 -15.75292 -15.55989 -14.83842 -14.34821 -14.21522 -13.83396 -13.66818 -13.55781 -13.24021 -13.03821 -12.78760 -12.62205 -12.30776 -12.27821 -11.88217 -11.82947 -11.35714 -11.35247 -11.13538 -10.93942 -10.84179 -10.75161 -10.65290 -10.50228 -10.40723 -10.26410 -10.11802 -9.47227 -8.99711 -8.78917 -8.63030 -7.81670 -7.71067 -6.40186 -3.81957 3.08276 3.20898 3.21226 3.27923 3.46789 3.97895 4.07903 4.63987 4.68041 4.86961 4.93699 5.01217 5.30765 5.53157 5.57768 5.64568 5.72144 5.76369 5.77963 5.87088 5.99137 6.09560 6.12303 6.18996 6.24074 6.27686 6.37689 6.49153 6.52872 6.73744 6.77071 6.92424 7.06490 7.11242 7.14333 7.34517 7.50729 7.73215 7.79398 7.82766 8.44485 8.89608 9.09165 9.59123 10.01464 10.57402 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017318 B = 0.006659 C = 0.005414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.388301 B = 4203.512560 C = 5170.688026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.112 4.112 3 C 0.139 3.861 4 N -0.443 5.443 5 C -0.341 4.341 6 H 0.100 0.900 7 C 0.041 3.959 8 N -0.847 5.847 9 Si 0.909 3.091 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.270 1.270 13 C 0.443 3.557 14 O -0.581 6.581 15 C 0.159 3.841 16 H 0.101 0.899 17 C -0.131 4.131 18 C -0.141 4.141 19 N -0.605 5.605 20 C 0.105 3.895 21 C -0.129 4.129 22 C -0.156 4.156 23 C 0.520 3.480 24 O -0.504 6.504 25 H 0.054 0.946 26 H 0.035 0.965 27 H 0.036 0.964 28 H 0.025 0.975 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.037 0.963 32 H 0.267 0.733 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.050 0.950 36 H 0.051 0.949 37 H 0.049 0.951 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.093 0.907 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.517 -3.659 -3.519 10.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.150 4.150 3 C 0.016 3.984 4 N -0.162 5.162 5 C -0.468 4.468 6 H 0.118 0.882 7 C -0.165 4.165 8 N -0.484 5.484 9 Si 0.735 3.265 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.195 1.195 13 C 0.229 3.771 14 O -0.465 6.465 15 C 0.054 3.946 16 H 0.119 0.881 17 C -0.170 4.170 18 C -0.199 4.199 19 N -0.341 5.341 20 C -0.019 4.019 21 C -0.167 4.167 22 C -0.197 4.197 23 C 0.306 3.694 24 O -0.377 6.377 25 H 0.073 0.927 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.044 0.956 29 H 0.110 0.890 30 H 0.113 0.887 31 H 0.055 0.945 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.096 0.904 41 H 0.103 0.897 42 H 0.111 0.889 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 8.706 -3.093 -3.992 10.065 hybrid contribution 0.193 0.115 1.088 1.111 sum 8.899 -2.978 -2.904 9.823 Atomic orbital electron populations 1.21560 0.97511 0.99614 1.00461 1.21683 0.93911 0.98410 1.01029 1.21331 0.80304 0.96890 0.99915 1.43813 1.05277 1.62295 1.04788 1.19628 0.93161 1.51933 0.82120 0.88234 1.25120 0.95906 0.96344 0.99123 1.70230 1.10937 1.37638 1.29640 0.86223 0.79212 0.79823 0.81193 1.20339 1.21124 1.19499 1.20120 0.88422 0.83832 0.84706 1.90604 1.74331 1.55529 1.26010 1.20711 0.92622 0.95391 0.85903 0.88118 1.21763 0.95332 0.96168 1.03727 1.21696 0.96101 1.01063 1.01034 1.48002 1.53831 1.25054 1.07194 1.21996 0.94416 0.87451 0.98042 1.22547 0.98607 1.00776 0.94772 1.22327 0.99683 0.99317 0.98365 1.20521 0.80004 0.85348 0.83516 1.90700 1.40641 1.25035 1.81329 0.92667 0.94621 0.94479 0.95574 0.89027 0.88655 0.94456 0.92201 0.90649 0.89742 0.93089 0.92952 0.93237 0.90745 0.91615 0.90360 0.89713 0.88867 0.88470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.63 9.91 37.16 0.37 -2.26 16 2 C -0.11 -2.60 5.61 -26.73 -0.15 -2.75 16 3 C 0.14 3.47 4.66 -4.04 -0.02 3.45 16 4 N -0.44 -11.21 2.62 -114.81 -0.30 -11.51 16 5 C -0.34 -8.31 8.68 -14.93 -0.13 -8.44 16 6 H 0.10 2.27 5.56 -52.49 -0.29 1.98 16 7 C 0.04 0.97 4.97 -17.47 -0.09 0.88 16 8 N -0.85 -20.67 8.41 55.50 0.47 -20.20 16 9 Si 0.91 18.73 29.63 -169.99 -5.04 13.70 16 10 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 11 H -0.29 -5.92 7.11 56.52 0.40 -5.52 16 12 H -0.27 -5.43 7.11 56.52 0.40 -5.02 16 13 C 0.44 11.08 6.79 -10.98 -0.07 11.00 16 14 O -0.58 -16.43 13.52 -16.61 -0.22 -16.65 16 15 C 0.16 3.23 1.85 -69.08 -0.13 3.10 16 16 H 0.10 1.95 6.63 -51.93 -0.34 1.60 16 17 C -0.13 -2.47 5.11 -26.73 -0.14 -2.60 16 18 C -0.14 -2.07 9.78 37.16 0.36 -1.71 16 19 N -0.61 -10.86 2.11 -166.16 -0.35 -11.21 16 20 C 0.10 1.34 7.30 -3.13 -0.02 1.32 16 21 C -0.13 -1.29 7.18 -25.10 -0.18 -1.47 16 22 C -0.16 -2.08 6.86 -26.74 -0.18 -2.26 16 23 C 0.52 10.05 6.81 -10.86 -0.07 9.97 16 24 O -0.50 -12.19 14.56 -16.60 -0.24 -12.43 16 25 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.09 2.29 6.48 -51.93 -0.34 1.95 16 30 H 0.10 2.45 5.82 -51.93 -0.30 2.15 16 31 H 0.04 0.97 7.38 -51.93 -0.38 0.59 16 32 H 0.27 6.23 8.31 -40.82 -0.34 5.90 16 33 H 0.07 1.61 6.75 -51.93 -0.35 1.26 16 34 H 0.08 1.64 7.21 -51.93 -0.37 1.27 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.05 0.70 7.67 -51.93 -0.40 0.30 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 43 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 337.20 15.07 5.08 5.08 Total: -1.00 -31.30 337.20 -8.05 -39.35 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -6.99 Total: 5.65 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: -0.45 Total: 8.23 kcal Atomic # 7 Polarization: -42.74 SS G_CDS: -0.19 Total: -42.93 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: -0.47 Total: -29.08 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.04 Total: 13.70 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.30 -8.05 -39.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170608821.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.703 kcal (2) G-P(sol) polarization free energy of solvation -31.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds