Wall clock time and date at job start Tue Mar 31 2020 02:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47244 * 2 1 4 4 C 1.52994 * 109.47185 * 239.99607 * 2 1 3 5 5 C 1.53001 * 109.46569 * 119.99619 * 2 1 3 6 6 N 1.46505 * 109.47083 * 64.54943 * 5 2 1 7 7 C 1.46497 * 120.00080 * 83.61208 * 6 5 2 8 8 C 1.50708 * 109.47318 * 243.27645 * 7 6 5 9 9 H 1.07997 * 119.99808 * 354.45239 * 8 7 6 10 10 C 1.37871 * 119.99869 * 174.44806 * 8 7 6 11 11 N 1.31511 * 120.00387 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99765 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47363 * 60.00095 * 12 10 8 14 14 H 1.48502 * 109.47349 * 180.02562 * 12 10 8 15 15 H 1.48508 * 109.47408 * 300.00028 * 12 10 8 16 16 C 1.34774 * 119.99891 * 263.61470 * 6 5 2 17 17 O 1.21282 * 119.99907 * 184.09092 * 16 6 5 18 18 C 1.50698 * 119.99957 * 4.09117 * 16 6 5 19 19 H 1.08993 * 110.85889 * 37.04898 * 18 16 6 20 20 C 1.54484 * 110.96805 * 273.26311 * 18 16 6 21 21 N 1.46866 * 105.42144 * 216.44186 * 20 18 16 22 22 C 1.34413 * 111.31245 * 17.02171 * 21 20 18 23 23 O 1.21277 * 124.94340 * 179.62446 * 22 21 20 24 24 C 1.51285 * 110.11939 * 359.58619 * 22 21 20 25 25 H 1.08997 * 109.47209 * 306.90950 * 1 2 3 26 26 H 1.09006 * 109.46935 * 66.90251 * 1 2 3 27 27 H 1.08999 * 109.47362 * 186.90467 * 1 2 3 28 28 H 1.08996 * 109.47039 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47080 * 299.99532 * 3 2 1 30 30 H 1.08999 * 109.47251 * 59.99720 * 3 2 1 31 31 H 1.08999 * 109.47588 * 311.08031 * 4 2 1 32 32 H 1.08998 * 109.47180 * 71.07751 * 4 2 1 33 33 H 1.08999 * 109.47122 * 191.07734 * 4 2 1 34 34 H 1.08997 * 109.47679 * 304.54645 * 5 2 1 35 35 H 1.09005 * 109.47039 * 184.54457 * 5 2 1 36 36 H 1.09006 * 109.47370 * 3.27317 * 7 6 5 37 37 H 1.09001 * 109.47342 * 123.27386 * 7 6 5 38 38 H 0.97002 * 120.00291 * 180.02562 * 11 10 8 39 39 H 1.09003 * 110.24605 * 335.42591 * 20 18 16 40 40 H 1.08994 * 110.24646 * 97.42724 * 20 18 16 41 41 H 0.97004 * 124.33565 * 197.01251 * 21 20 18 42 42 H 1.08997 * 110.48660 * 225.07163 * 24 22 21 43 43 H 1.08993 * 110.48669 * 102.42452 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 2.0399 -0.7212 1.2493 6 7 1.6430 -2.1304 1.1959 7 6 2.4545 -3.0920 0.4456 8 6 1.6418 -3.6564 -0.6912 9 1 0.5970 -3.4003 -0.7872 10 6 2.2321 -4.4996 -1.6085 11 7 3.5042 -4.8118 -1.4913 12 14 1.2249 -5.1985 -3.0179 13 1 0.6914 -4.0861 -3.8444 14 1 2.0858 -6.0704 -3.8568 15 1 0.0964 -5.9952 -2.4725 16 6 0.5312 -2.5422 1.8369 17 8 0.2427 -3.7200 1.8549 18 6 -0.3535 -1.5390 2.5311 19 1 -0.4066 -0.6100 1.9635 20 6 0.1330 -1.2781 3.9740 21 7 -1.0874 -1.0984 4.7710 22 6 -2.1675 -1.5680 4.1233 23 8 -3.2998 -1.5504 4.5573 24 6 -1.7655 -2.1208 2.7737 25 1 -0.3633 0.6171 0.8217 26 1 -0.3633 0.4032 -0.9453 27 1 -0.3634 -1.0202 0.1235 28 1 3.1300 1.4424 0.0005 29 1 1.6768 1.9562 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.5245 -1.6760 -1.3534 32 1 1.8469 -0.1063 -2.1281 33 1 3.1119 -0.8955 -1.1559 34 1 1.6116 -0.2566 2.1374 35 1 3.1269 -0.6513 1.2911 36 1 3.3367 -2.5906 0.0475 37 1 2.7640 -3.9008 1.1075 38 1 3.9196 -5.4047 -2.1369 39 1 0.7009 -2.1331 4.3409 40 1 0.7434 -0.3758 4.0089 41 1 -1.1108 -0.6929 5.6519 42 1 -2.4558 -1.7815 2.0015 43 1 -1.7295 -3.2098 2.8029 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170898946.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:06:29 Heat of formation + Delta-G solvation = -73.580755 kcal Electronic energy + Delta-G solvation = -24138.061092 eV Core-core repulsion = 20797.203182 eV Total energy + Delta-G solvation = -3340.857911 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.71712 -39.12850 -37.06532 -36.07200 -33.84706 -32.54535 -31.43477 -28.52119 -27.37795 -27.12148 -26.48330 -25.37668 -23.70736 -21.80768 -20.53771 -19.28800 -18.07925 -17.36997 -17.07729 -16.44783 -15.48853 -15.31844 -14.90077 -14.77670 -14.27998 -13.89028 -13.79813 -13.56837 -13.35908 -13.10603 -13.01575 -12.60042 -12.25203 -12.08349 -11.94170 -11.60333 -11.37524 -11.29021 -11.13061 -10.93801 -10.84118 -10.73220 -10.57438 -10.27664 -10.11932 -10.04002 -9.89280 -9.49338 -9.19512 -8.94135 -8.45708 -7.68168 -6.07806 -4.06781 2.61085 3.12362 3.31521 3.36000 3.37238 3.42404 3.78473 4.38928 4.44685 4.53181 4.79790 4.99503 5.03880 5.09307 5.22885 5.30289 5.33823 5.40841 5.54631 5.61675 5.73489 5.80094 5.84763 5.92963 6.03062 6.07808 6.11047 6.25724 6.43133 6.47260 6.63421 6.71155 6.78171 6.91129 6.98072 7.37148 7.46783 7.48720 7.90121 8.10906 8.22045 8.39153 8.86823 9.02332 9.54104 11.00834 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016417 B = 0.006285 C = 0.005271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.184295 B = 4453.939683 C = 5310.753241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.138 4.138 4 C -0.159 4.159 5 C 0.118 3.882 6 N -0.593 5.593 7 C 0.250 3.750 8 C -0.505 4.505 9 H 0.059 0.941 10 C 0.062 3.938 11 N -0.896 5.896 12 Si 0.892 3.108 13 H -0.277 1.277 14 H -0.288 1.288 15 H -0.276 1.276 16 C 0.518 3.482 17 O -0.522 6.522 18 C -0.147 4.147 19 H 0.123 0.877 20 C 0.116 3.884 21 N -0.732 5.732 22 C 0.525 3.475 23 O -0.540 6.540 24 C -0.143 4.143 25 H 0.048 0.952 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.048 0.952 31 H 0.111 0.889 32 H 0.033 0.967 33 H 0.051 0.949 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.044 0.956 37 H 0.023 0.977 38 H 0.263 0.737 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.408 0.592 42 H 0.103 0.897 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.899 12.946 6.792 14.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.086 4.086 3 C -0.196 4.196 4 C -0.216 4.216 5 C -0.007 4.007 6 N -0.324 5.324 7 C 0.132 3.868 8 C -0.543 4.543 9 H 0.078 0.922 10 C -0.140 4.140 11 N -0.535 5.535 12 Si 0.720 3.280 13 H -0.202 1.202 14 H -0.213 1.213 15 H -0.201 1.201 16 C 0.303 3.697 17 O -0.397 6.397 18 C -0.169 4.169 19 H 0.141 0.859 20 C -0.009 4.009 21 N -0.388 5.388 22 C 0.312 3.688 23 O -0.418 6.418 24 C -0.183 4.183 25 H 0.067 0.933 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.129 0.871 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.062 0.938 37 H 0.041 0.959 38 H 0.073 0.927 39 H 0.096 0.904 40 H 0.103 0.897 41 H 0.247 0.753 42 H 0.122 0.878 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.457 12.124 6.808 14.120 hybrid contribution -0.249 -0.071 -0.550 0.608 sum -2.706 12.053 6.258 13.848 Atomic orbital electron populations 1.22097 0.95443 1.01948 1.00833 1.20959 0.95455 0.94749 0.97408 1.21846 1.00964 0.95644 1.01136 1.22324 1.02157 1.03212 0.93871 1.21648 1.00131 0.82254 0.96640 1.48226 1.25411 1.08592 1.50142 1.19328 0.90296 0.86856 0.90352 1.21147 0.96534 1.27694 1.08975 0.92246 1.24864 0.94894 0.96197 0.98059 1.69902 1.10694 1.36093 1.36792 0.86648 0.80199 0.79203 0.81982 1.20243 1.21326 1.20140 1.19660 0.81601 0.88614 0.79825 1.90706 1.71263 1.17610 1.60152 1.22872 0.95622 1.01835 0.96575 0.85947 1.21998 0.86951 1.02466 0.89509 1.46234 1.08538 1.63007 1.21040 1.20965 0.84116 0.76200 0.87548 1.90732 1.20796 1.57559 1.72666 1.22323 0.95810 1.04819 0.95385 0.93277 0.92725 0.91687 0.92704 0.92789 0.93297 0.87123 0.94810 0.93024 0.91673 0.90772 0.93833 0.95863 0.92732 0.90418 0.89727 0.75307 0.87837 0.85706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 6.85 37.16 0.25 -1.64 16 2 C -0.08 -1.13 0.85 -154.51 -0.13 -1.27 16 3 C -0.14 -1.48 8.45 37.16 0.31 -1.16 16 4 C -0.16 -2.70 7.17 37.15 0.27 -2.44 16 5 C 0.12 1.61 4.44 -4.04 -0.02 1.59 16 6 N -0.59 -10.75 2.20 -175.05 -0.38 -11.14 16 7 C 0.25 5.84 4.30 -5.19 -0.02 5.81 16 8 C -0.50 -13.06 5.68 -34.44 -0.20 -13.26 16 9 H 0.06 1.58 7.38 -52.49 -0.39 1.20 16 10 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 11 N -0.90 -25.10 13.29 55.43 0.74 -24.36 16 12 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 13 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 14 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 15 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 16 C 0.52 9.43 5.22 -10.99 -0.06 9.37 16 17 O -0.52 -11.99 14.95 5.56 0.08 -11.90 16 18 C -0.15 -1.95 1.90 -90.13 -0.17 -2.12 16 19 H 0.12 1.43 3.42 -51.93 -0.18 1.25 16 20 C 0.12 1.22 6.93 -3.06 -0.02 1.20 16 21 N -0.73 -8.02 6.24 -59.13 -0.37 -8.38 16 22 C 0.52 7.55 8.43 -10.86 -0.09 7.46 16 23 O -0.54 -9.67 18.03 5.56 0.10 -9.57 16 24 C -0.14 -2.03 6.34 -26.74 -0.17 -2.20 16 25 H 0.05 0.52 6.78 -51.93 -0.35 0.17 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.99 5.67 -51.93 -0.29 0.70 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.11 2.30 4.31 -51.93 -0.22 2.07 16 32 H 0.03 0.53 8.10 -51.93 -0.42 0.11 16 33 H 0.05 0.92 7.26 -51.93 -0.38 0.55 16 34 H 0.06 0.69 5.31 -51.93 -0.28 0.41 16 35 H 0.07 0.99 8.03 -51.93 -0.42 0.57 16 36 H 0.04 1.03 6.70 -51.93 -0.35 0.69 16 37 H 0.02 0.62 8.13 -51.93 -0.42 0.20 16 38 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 39 H 0.08 0.89 7.88 -51.93 -0.41 0.48 16 40 H 0.08 0.65 7.29 -51.93 -0.38 0.27 16 41 H 0.41 3.55 8.96 -40.82 -0.37 3.18 16 42 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 43 H 0.13 2.02 6.87 -51.93 -0.36 1.67 16 LS Contribution 328.69 15.07 4.95 4.95 Total: -1.00 -31.74 328.69 -6.50 -38.23 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -6.45 Total: 3.03 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: -0.14 Total: 2.92 kcal Atomic # 7 Polarization: -43.87 SS G_CDS: -0.02 Total: -43.89 kcal Atomic # 8 Polarization: -21.66 SS G_CDS: 0.18 Total: -21.47 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.74 -6.50 -38.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170898946.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.346 kcal (2) G-P(sol) polarization free energy of solvation -31.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds