Wall clock time and date at job start Tue Mar 31 2020 02:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47467 * 2 1 4 4 C 1.52999 * 109.47263 * 120.00747 * 2 1 3 5 5 C 1.53004 * 109.47273 * 64.99674 * 4 2 1 6 6 N 1.46502 * 109.46746 * 180.02562 * 5 4 2 7 7 C 1.46496 * 119.99605 * 269.99333 * 6 5 4 8 8 C 1.50701 * 109.47252 * 274.37308 * 7 6 5 9 9 H 1.07998 * 120.00280 * 0.02562 * 8 7 6 10 10 C 1.37881 * 119.99761 * 180.02562 * 8 7 6 11 11 N 1.31517 * 119.99874 * 180.02562 * 10 8 7 12 12 Si 1.86794 * 120.00378 * 0.02562 * 10 8 7 13 13 H 1.48497 * 109.47257 * 89.99946 * 12 10 8 14 14 H 1.48500 * 109.47367 * 210.00385 * 12 10 8 15 15 H 1.48502 * 109.46956 * 329.99790 * 12 10 8 16 16 C 1.34769 * 120.00245 * 90.00310 * 6 5 4 17 17 O 1.21282 * 119.99949 * 4.63541 * 16 6 5 18 18 C 1.50698 * 120.00058 * 184.64301 * 16 6 5 19 19 H 1.09005 * 110.85600 * 328.60204 * 18 16 6 20 20 C 1.54481 * 111.00718 * 92.41246 * 18 16 6 21 21 N 1.46762 * 105.53497 * 143.34021 * 20 18 16 22 22 C 1.34418 * 111.30071 * 343.36789 * 21 20 18 23 23 O 1.21283 * 124.93890 * 180.27250 * 22 21 20 24 24 C 1.51276 * 110.11741 * 0.02562 * 22 21 20 25 25 H 1.08997 * 109.47538 * 179.97438 * 1 2 3 26 26 H 1.09012 * 109.46680 * 299.99818 * 1 2 3 27 27 H 1.09001 * 109.47393 * 59.99119 * 1 2 3 28 28 H 1.09007 * 109.46616 * 240.00646 * 2 1 3 29 29 H 1.08999 * 109.46659 * 180.02562 * 3 2 1 30 30 H 1.08995 * 109.47189 * 300.00511 * 3 2 1 31 31 H 1.09007 * 109.46675 * 60.00682 * 3 2 1 32 32 H 1.08999 * 109.46857 * 304.99258 * 4 2 1 33 33 H 1.09004 * 109.47416 * 184.99614 * 4 2 1 34 34 H 1.08994 * 109.47144 * 59.99721 * 5 4 2 35 35 H 1.08997 * 109.46747 * 299.99607 * 5 4 2 36 36 H 1.09005 * 109.47431 * 34.37418 * 7 6 5 37 37 H 1.09006 * 109.47147 * 154.37477 * 7 6 5 38 38 H 0.97001 * 120.00243 * 180.02562 * 11 10 8 39 39 H 1.08995 * 110.24565 * 262.55543 * 20 18 16 40 40 H 1.09000 * 110.23948 * 24.46452 * 20 18 16 41 41 H 0.96995 * 124.34613 * 163.21801 * 21 20 18 42 42 H 1.09001 * 110.48855 * 135.17280 * 24 22 21 43 43 H 1.09003 * 110.48699 * 257.81757 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 1.6352 -2.1956 1.1877 6 7 2.1231 -2.8862 2.3842 7 6 3.4513 -3.5043 2.3826 8 6 3.3573 -4.8954 1.8107 9 1 2.4037 -5.2804 1.4809 10 6 4.4889 -5.6765 1.7084 11 7 4.4070 -6.8904 1.2089 12 14 6.1381 -5.0109 2.2795 13 1 6.3379 -5.3460 3.7123 14 1 7.2247 -5.6215 1.4721 15 1 6.1629 -3.5361 2.1078 16 6 1.3500 -2.9529 3.4861 17 8 0.2190 -2.5157 3.4607 18 6 1.8909 -3.5707 4.7497 19 1 2.6064 -4.3604 4.5202 20 6 2.5254 -2.4982 5.6628 21 7 2.1986 -2.9062 7.0341 22 6 1.2015 -3.8075 7.0509 23 8 0.7330 -4.3065 8.0521 24 6 0.7447 -4.1044 5.6396 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8901 27 1 -0.3634 0.5140 -0.8899 28 1 1.8932 -0.5138 -0.8901 29 1 3.1300 1.4423 -0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6768 1.9563 0.8901 32 1 1.6055 -0.2619 2.1369 33 1 3.1263 -0.6446 1.2950 34 1 2.0697 -2.6550 0.3000 35 1 0.5489 -2.2725 1.1419 36 1 4.1297 -2.9063 1.7740 37 1 3.8291 -3.5560 3.4038 38 1 5.2030 -7.4401 1.1373 39 1 3.6059 -2.4735 5.5211 40 1 2.0952 -1.5195 5.4502 41 1 2.6461 -2.5703 7.8264 42 1 0.6190 -5.1778 5.4972 43 1 -0.1844 -3.5781 5.4207 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171548503.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:06:31 Heat of formation + Delta-G solvation = -90.441990 kcal Electronic energy + Delta-G solvation = -23150.138097 eV Core-core repulsion = 19808.549029 eV Total energy + Delta-G solvation = -3341.589069 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.53433 -38.98550 -36.80463 -35.91354 -34.98533 -32.61438 -31.44607 -29.53019 -27.87617 -27.29919 -27.08890 -24.03515 -22.83292 -21.70450 -20.45051 -19.87174 -18.38293 -17.30110 -17.15869 -17.03390 -15.71292 -15.39202 -15.03497 -14.75572 -14.61370 -14.10536 -13.87718 -13.60122 -13.36775 -13.16244 -13.06216 -12.74564 -12.72565 -12.41481 -12.17971 -12.01453 -11.71688 -11.36766 -11.16456 -11.07533 -10.97144 -10.84868 -10.71166 -10.53512 -10.32734 -10.23778 -9.82207 -9.70909 -9.29095 -9.09392 -8.81594 -7.88970 -6.30110 -4.33193 2.70074 2.99760 3.09223 3.16048 3.19525 3.42511 3.62643 4.17414 4.50253 4.64989 4.85861 4.99018 5.00385 5.03111 5.06517 5.13346 5.40858 5.51396 5.58598 5.64067 5.68429 5.73264 5.79025 5.88861 5.91071 6.00925 6.02938 6.15004 6.18238 6.23442 6.29414 6.35946 6.49189 6.52654 6.59054 6.81342 7.01882 7.19261 7.33774 7.96883 8.29841 8.32221 8.67664 8.78506 9.28069 10.82413 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.009245 B = 0.007484 C = 0.004752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3027.870374 B = 3740.379316 C = 5890.669924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.094 4.094 3 C -0.145 4.145 4 C -0.128 4.128 5 C 0.117 3.883 6 N -0.584 5.584 7 C 0.206 3.794 8 C -0.546 4.546 9 H 0.080 0.920 10 C 0.078 3.922 11 N -0.887 5.887 12 Si 0.869 3.131 13 H -0.272 1.272 14 H -0.282 1.282 15 H -0.263 1.263 16 C 0.531 3.469 17 O -0.561 6.561 18 C -0.128 4.128 19 H 0.128 0.872 20 C 0.118 3.882 21 N -0.731 5.731 22 C 0.526 3.474 23 O -0.541 6.541 24 C -0.142 4.142 25 H 0.060 0.940 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.035 0.965 37 H 0.031 0.969 38 H 0.268 0.732 39 H 0.087 0.913 40 H 0.074 0.926 41 H 0.409 0.591 42 H 0.107 0.893 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.946 13.189 1.772 13.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.113 4.113 3 C -0.202 4.202 4 C -0.166 4.166 5 C -0.006 4.006 6 N -0.313 5.313 7 C 0.085 3.915 8 C -0.584 4.584 9 H 0.098 0.902 10 C -0.127 4.127 11 N -0.524 5.524 12 Si 0.695 3.305 13 H -0.198 1.198 14 H -0.208 1.208 15 H -0.188 1.188 16 C 0.317 3.683 17 O -0.441 6.441 18 C -0.150 4.150 19 H 0.146 0.854 20 C -0.007 4.007 21 N -0.387 5.387 22 C 0.313 3.687 23 O -0.418 6.418 24 C -0.182 4.182 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.053 0.947 37 H 0.049 0.951 38 H 0.078 0.922 39 H 0.105 0.895 40 H 0.093 0.907 41 H 0.247 0.753 42 H 0.126 0.874 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.705 12.929 2.096 13.208 hybrid contribution 1.450 0.237 0.400 1.522 sum -0.256 13.165 2.496 13.402 Atomic orbital electron populations 1.21880 0.95231 1.02189 1.01200 1.21051 0.95959 0.95878 0.98458 1.21823 1.00822 0.96203 1.01361 1.22005 1.00941 0.95888 0.97801 1.21434 1.00381 0.90765 0.88054 1.47882 1.18585 1.52930 1.11874 1.19878 0.79633 0.94434 0.97568 1.21368 0.97038 0.96888 1.43116 0.90241 1.24885 0.98757 0.94600 0.94419 1.69884 1.29843 1.08633 1.44066 0.86966 0.84234 0.79854 0.79441 1.19788 1.20782 1.18787 1.19833 0.85114 0.78657 0.84647 1.90613 1.18749 1.50128 1.84604 1.22328 0.99494 0.99827 0.93333 0.85376 1.21901 1.00968 0.97485 0.80349 1.46187 1.38360 1.45109 1.09060 1.20943 0.78675 0.77670 0.91410 1.90726 1.59107 1.53960 1.38014 1.22321 1.00227 1.04719 0.90968 0.92139 0.92791 0.93221 0.91039 0.92833 0.92978 0.92924 0.92015 0.91919 0.90087 0.90312 0.94717 0.95134 0.92237 0.89498 0.90739 0.75279 0.87431 0.86147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 8.95 37.15 0.33 -1.35 16 2 C -0.09 -1.09 2.92 -90.62 -0.26 -1.36 16 3 C -0.14 -1.45 9.19 37.16 0.34 -1.11 16 4 C -0.13 -1.74 5.01 -26.73 -0.13 -1.87 16 5 C 0.12 1.91 5.22 -4.04 -0.02 1.89 16 6 N -0.58 -10.64 2.46 -175.06 -0.43 -11.07 16 7 C 0.21 4.09 3.91 -5.20 -0.02 4.07 16 8 C -0.55 -13.50 9.92 -34.44 -0.34 -13.85 16 9 H 0.08 2.23 8.06 -52.49 -0.42 1.81 16 10 C 0.08 1.99 5.47 -17.82 -0.10 1.90 16 11 N -0.89 -24.91 13.96 55.43 0.77 -24.13 16 12 Si 0.87 18.65 27.47 -169.99 -4.67 13.99 16 13 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 14 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 15 H -0.26 -5.25 6.54 56.52 0.37 -4.88 16 16 C 0.53 9.52 6.76 -10.99 -0.07 9.45 16 17 O -0.56 -11.07 15.24 5.56 0.08 -10.98 16 18 C -0.13 -2.01 2.56 -90.14 -0.23 -2.24 16 19 H 0.13 2.16 6.49 -51.93 -0.34 1.82 16 20 C 0.12 1.48 7.27 -3.12 -0.02 1.45 16 21 N -0.73 -9.27 6.24 -59.21 -0.37 -9.64 16 22 C 0.53 8.36 8.43 -10.86 -0.09 8.27 16 23 O -0.54 -10.37 18.03 5.56 0.10 -10.27 16 24 C -0.14 -2.20 6.36 -26.75 -0.17 -2.37 16 25 H 0.06 0.74 6.57 -51.93 -0.34 0.40 16 26 H 0.05 0.63 8.14 -51.92 -0.42 0.20 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 35 H 0.08 1.34 5.78 -51.93 -0.30 1.04 16 36 H 0.03 0.68 7.17 -51.93 -0.37 0.31 16 37 H 0.03 0.57 5.43 -51.93 -0.28 0.28 16 38 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 39 H 0.09 0.94 8.10 -51.93 -0.42 0.52 16 40 H 0.07 0.90 7.88 -51.93 -0.41 0.49 16 41 H 0.41 4.20 8.96 -40.82 -0.37 3.84 16 42 H 0.11 1.63 8.14 -51.93 -0.42 1.21 16 43 H 0.12 1.93 6.91 -51.93 -0.36 1.57 16 LS Contribution 347.10 15.07 5.23 5.23 Total: -1.00 -30.18 347.10 -7.07 -37.26 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -7.00 Total: 6.73 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: -0.79 Total: 2.89 kcal Atomic # 7 Polarization: -44.82 SS G_CDS: -0.03 Total: -44.84 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: 0.18 Total: -21.26 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -4.67 Total: 13.99 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.18 -7.07 -37.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171548503.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.184 kcal (2) G-P(sol) polarization free energy of solvation -30.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds