Wall clock time and date at job start Tue Mar 31 2020 02:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47275 * 2 1 4 4 C 1.52994 * 109.47503 * 119.99994 * 2 1 3 5 5 C 1.53001 * 109.47258 * 174.99940 * 4 2 1 6 6 N 1.46500 * 109.47285 * 180.02562 * 5 4 2 7 7 C 1.46500 * 119.99686 * 269.99975 * 6 5 4 8 8 C 1.50696 * 109.47150 * 274.37103 * 7 6 5 9 9 H 1.08002 * 120.00006 * 0.02562 * 8 7 6 10 10 C 1.37880 * 119.99791 * 179.97438 * 8 7 6 11 11 N 1.31518 * 119.99858 * 180.02562 * 10 8 7 12 12 Si 1.86794 * 120.00315 * 0.02562 * 10 8 7 13 13 H 1.48494 * 109.47381 * 89.99971 * 12 10 8 14 14 H 1.48504 * 109.47198 * 210.00067 * 12 10 8 15 15 H 1.48501 * 109.47066 * 329.99933 * 12 10 8 16 16 C 1.34771 * 120.00419 * 89.99701 * 6 5 4 17 17 O 1.21284 * 119.99951 * 4.64835 * 16 6 5 18 18 C 1.50699 * 120.00107 * 184.64425 * 16 6 5 19 19 H 1.08999 * 110.85894 * 328.61192 * 18 16 6 20 20 C 1.54489 * 110.97057 * 204.81875 * 18 16 6 21 21 N 1.46763 * 105.47227 * 216.43046 * 20 18 16 22 22 C 1.34422 * 111.30143 * 17.28575 * 21 20 18 23 23 O 1.21284 * 124.93871 * 179.30961 * 22 21 20 24 24 C 1.51281 * 110.11185 * 359.16626 * 22 21 20 25 25 H 1.08999 * 109.46891 * 299.99481 * 1 2 3 26 26 H 1.08994 * 109.47703 * 59.99780 * 1 2 3 27 27 H 1.09003 * 109.46891 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46891 * 240.00519 * 2 1 3 29 29 H 1.09001 * 109.47288 * 300.00801 * 3 2 1 30 30 H 1.09000 * 109.46937 * 59.99667 * 3 2 1 31 31 H 1.08997 * 109.47575 * 180.02562 * 3 2 1 32 32 H 1.09011 * 109.46974 * 55.00024 * 4 2 1 33 33 H 1.08998 * 109.47266 * 295.00225 * 4 2 1 34 34 H 1.08997 * 109.46925 * 60.00017 * 5 4 2 35 35 H 1.08998 * 109.47215 * 300.00316 * 5 4 2 36 36 H 1.09000 * 109.47071 * 34.37403 * 7 6 5 37 37 H 1.09003 * 109.47084 * 154.37410 * 7 6 5 38 38 H 0.96995 * 120.00393 * 180.02562 * 11 10 8 39 39 H 1.08989 * 110.24308 * 97.43082 * 20 18 16 40 40 H 1.09002 * 110.24300 * 335.42905 * 20 18 16 41 41 H 0.96996 * 124.34501 * 197.01194 * 21 20 18 42 42 H 1.09003 * 110.64155 * 225.35576 * 24 22 21 43 43 H 1.09006 * 110.38291 * 102.81180 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.8310 1.1878 6 7 4.0533 -1.5221 2.3837 7 6 4.4017 -0.7549 3.5821 8 6 5.8249 -0.2716 3.4729 9 1 6.4111 -0.5115 2.5982 10 6 6.3783 0.4779 4.4894 11 7 7.6202 0.9001 4.3940 12 14 5.3642 0.8935 6.0020 13 1 5.5418 -0.1688 7.0243 14 1 5.8143 2.1952 6.5574 15 1 3.9303 0.9847 5.6269 16 6 4.1820 -2.8637 2.3814 17 8 3.9746 -3.4910 1.3644 18 6 4.5837 -3.5842 3.6425 19 1 5.2359 -2.9612 4.2545 20 6 5.2570 -4.9359 3.3164 21 7 4.8130 -5.8583 4.3681 22 6 3.7310 -5.3835 5.0092 23 8 3.1541 -5.9513 5.9124 24 6 3.3401 -4.0364 4.4425 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4426 -0.0005 32 1 1.6054 -1.7199 1.2951 33 1 1.7517 -0.1583 2.1369 34 1 3.9995 0.1676 1.1419 35 1 3.8532 -1.3939 0.3001 36 1 3.7332 0.1013 3.6725 37 1 4.3001 -1.3898 4.4623 38 1 8.0097 1.4270 5.1091 39 1 6.3417 -4.8321 3.3390 40 1 4.9317 -5.2933 2.3393 41 1 5.2425 -6.7038 4.5716 42 1 3.1247 -3.3301 5.2443 43 1 2.4782 -4.1377 3.7828 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171548508.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:06:33 Heat of formation + Delta-G solvation = -90.798316 kcal Electronic energy + Delta-G solvation = -23164.101252 eV Core-core repulsion = 19822.496732 eV Total energy + Delta-G solvation = -3341.604520 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.53583 -38.98559 -36.82749 -35.87256 -34.95985 -32.60670 -31.56422 -29.45426 -27.70566 -27.42155 -27.04572 -24.11132 -22.79019 -21.65209 -20.49523 -19.82143 -18.36986 -17.25445 -17.13755 -17.08260 -15.72612 -15.44035 -15.02750 -14.75941 -14.50800 -14.12929 -13.82924 -13.66784 -13.41000 -13.16886 -12.91155 -12.84491 -12.55931 -12.42743 -12.15412 -11.93543 -11.76329 -11.32728 -11.26878 -11.12646 -10.86352 -10.85380 -10.71776 -10.53794 -10.37391 -10.19590 -9.92236 -9.70076 -9.26721 -8.98102 -8.80631 -7.88038 -6.30021 -4.32995 2.66484 3.01724 3.11884 3.19510 3.22221 3.42209 3.65307 4.19004 4.43604 4.68713 4.87941 4.98167 5.01114 5.06660 5.09686 5.13950 5.40505 5.57709 5.61054 5.66062 5.72269 5.76142 5.80902 5.88216 5.90732 5.93196 6.03039 6.14421 6.18942 6.24990 6.30892 6.37535 6.53225 6.54181 6.61198 6.82595 7.03968 7.19785 7.34675 7.97516 8.29930 8.31225 8.67425 8.77943 9.28696 10.82325 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.009563 B = 0.007380 C = 0.004883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2927.113412 B = 3792.889047 C = 5733.294465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 C -0.151 4.151 4 C -0.128 4.128 5 C 0.117 3.883 6 N -0.583 5.583 7 C 0.205 3.795 8 C -0.545 4.545 9 H 0.079 0.921 10 C 0.078 3.922 11 N -0.888 5.888 12 Si 0.867 3.133 13 H -0.272 1.272 14 H -0.282 1.282 15 H -0.263 1.263 16 C 0.531 3.469 17 O -0.564 6.564 18 C -0.128 4.128 19 H 0.128 0.872 20 C 0.114 3.886 21 N -0.728 5.728 22 C 0.526 3.474 23 O -0.542 6.542 24 C -0.141 4.141 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.035 0.965 37 H 0.032 0.968 38 H 0.267 0.733 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.409 0.591 42 H 0.108 0.892 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.674 -3.910 -4.536 10.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 C -0.208 4.208 4 C -0.167 4.167 5 C -0.005 4.005 6 N -0.312 5.312 7 C 0.084 3.916 8 C -0.583 4.583 9 H 0.098 0.902 10 C -0.126 4.126 11 N -0.525 5.525 12 Si 0.693 3.307 13 H -0.197 1.197 14 H -0.208 1.208 15 H -0.187 1.187 16 C 0.318 3.682 17 O -0.445 6.445 18 C -0.149 4.149 19 H 0.146 0.854 20 C -0.011 4.011 21 N -0.384 5.384 22 C 0.312 3.688 23 O -0.420 6.420 24 C -0.181 4.181 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.088 0.912 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.053 0.947 37 H 0.050 0.950 38 H 0.077 0.923 39 H 0.104 0.896 40 H 0.109 0.891 41 H 0.248 0.752 42 H 0.127 0.873 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -8.980 -4.260 -4.515 10.917 hybrid contribution 0.008 0.192 1.003 1.021 sum -8.972 -4.068 -3.512 10.458 Atomic orbital electron populations 1.21823 0.95547 1.01450 1.01405 1.21040 0.95377 0.96433 0.98395 1.21913 1.01776 0.95738 1.01358 1.22008 0.96421 1.00468 0.97803 1.21429 0.92824 0.98144 0.88151 1.47870 1.62348 1.05462 1.15470 1.19888 0.97268 0.91740 0.82686 1.21356 0.95731 1.34448 1.06801 0.90246 1.24869 0.94744 0.94931 0.98036 1.69880 1.13198 1.35867 1.33558 0.86986 0.81202 0.78796 0.83679 1.19714 1.20771 1.18733 1.19831 0.76984 0.82544 0.88849 1.90612 1.53035 1.66705 1.34100 1.22308 0.98441 0.97072 0.97122 0.85373 1.22049 0.99997 0.87479 0.91577 1.46203 1.31522 1.23681 1.36947 1.20788 0.79633 0.87355 0.81019 1.90731 1.56722 1.64720 1.29823 1.22249 0.98706 0.95783 1.01399 0.92837 0.92983 0.92912 0.91202 0.93155 0.92678 0.91926 0.92055 0.91849 0.89773 0.90677 0.94712 0.95031 0.92251 0.89563 0.89099 0.75211 0.87340 0.87607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.19 37.16 0.34 -1.16 16 2 C -0.09 -1.11 2.92 -90.62 -0.26 -1.37 16 3 C -0.15 -1.74 8.95 37.16 0.33 -1.40 16 4 C -0.13 -1.80 5.01 -26.73 -0.13 -1.94 16 5 C 0.12 1.95 5.22 -4.04 -0.02 1.93 16 6 N -0.58 -10.78 2.46 -175.06 -0.43 -11.21 16 7 C 0.21 4.16 3.91 -5.20 -0.02 4.14 16 8 C -0.55 -13.48 9.92 -34.44 -0.34 -13.82 16 9 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 10 C 0.08 2.02 5.47 -17.82 -0.10 1.92 16 11 N -0.89 -24.83 13.96 55.43 0.77 -24.06 16 12 Si 0.87 18.98 27.47 -169.99 -4.67 14.31 16 13 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 14 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 15 H -0.26 -5.41 6.54 56.52 0.37 -5.04 16 16 C 0.53 9.55 6.77 -10.99 -0.07 9.47 16 17 O -0.56 -11.04 15.23 5.55 0.08 -10.95 16 18 C -0.13 -2.00 2.57 -90.13 -0.23 -2.23 16 19 H 0.13 2.16 6.49 -51.93 -0.34 1.82 16 20 C 0.11 1.53 7.29 -3.12 -0.02 1.51 16 21 N -0.73 -9.43 6.24 -59.20 -0.37 -9.80 16 22 C 0.53 8.18 8.43 -10.86 -0.09 8.09 16 23 O -0.54 -10.19 18.03 5.55 0.10 -10.09 16 24 C -0.14 -2.04 6.34 -26.74 -0.17 -2.21 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.77 6.57 -51.93 -0.34 0.43 16 32 H 0.06 0.90 8.14 -51.92 -0.42 0.48 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.08 1.43 6.50 -51.93 -0.34 1.09 16 35 H 0.07 1.28 7.36 -51.93 -0.38 0.90 16 36 H 0.03 0.71 7.16 -51.93 -0.37 0.33 16 37 H 0.03 0.61 5.47 -51.93 -0.28 0.33 16 38 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 39 H 0.09 1.05 8.14 -51.94 -0.42 0.63 16 40 H 0.09 1.28 6.89 -51.93 -0.36 0.92 16 41 H 0.41 4.35 8.96 -40.82 -0.37 3.99 16 42 H 0.11 1.49 8.14 -51.93 -0.42 1.06 16 43 H 0.11 1.47 7.89 -51.93 -0.41 1.07 16 LS Contribution 347.17 15.07 5.23 5.23 Total: -1.00 -29.92 347.17 -7.08 -37.00 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -7.00 Total: 6.63 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -0.79 Total: 2.93 kcal Atomic # 7 Polarization: -45.04 SS G_CDS: -0.03 Total: -45.06 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: 0.18 Total: -21.04 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -4.67 Total: 14.31 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.92 -7.08 -37.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171548508.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.798 kcal (2) G-P(sol) polarization free energy of solvation -29.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds