Wall clock time and date at job start Tue Mar 31 2020 02:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47061 * 2 1 4 4 N 1.46505 * 109.47103 * 183.94537 * 3 2 1 5 5 C 1.37089 * 120.00541 * 267.86692 * 4 3 2 6 6 H 1.08004 * 120.00283 * 191.26421 * 5 4 3 7 7 C 1.38955 * 119.99951 * 11.25976 * 5 4 3 8 8 N 1.31411 * 119.99930 * 17.76686 * 7 5 4 9 9 Si 1.86801 * 120.00141 * 197.77397 * 7 5 4 10 10 H 1.48503 * 109.46834 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47304 * 119.99343 * 9 7 5 12 12 H 1.48499 * 109.47198 * 240.00130 * 9 7 5 13 13 C 1.34780 * 119.99723 * 87.85826 * 4 3 2 14 14 O 1.21294 * 120.00247 * 185.30471 * 13 4 3 15 15 C 1.50706 * 119.99780 * 5.30812 * 13 4 3 16 16 H 1.08999 * 109.69992 * 350.80272 * 15 13 4 17 17 C 1.52757 * 109.50714 * 230.68624 * 15 13 4 18 18 C 1.53042 * 109.38396 * 185.70638 * 17 15 13 19 19 C 1.53042 * 109.53798 * 61.23919 * 18 17 15 20 20 C 1.53191 * 109.31484 * 298.63959 * 19 18 17 21 21 N 1.46923 * 108.77717 * 54.62771 * 20 19 18 22 22 C 1.34779 * 120.62963 * 126.36959 * 21 20 19 23 23 C 1.50704 * 120.00148 * 354.10311 * 22 21 20 24 24 O 1.21283 * 120.00179 * 174.37629 * 22 21 20 25 25 H 1.09000 * 109.47397 * 300.00363 * 1 2 3 26 26 H 1.09008 * 109.47046 * 59.99764 * 1 2 3 27 27 H 1.09000 * 109.47494 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47182 * 239.99928 * 2 1 3 29 29 H 1.09005 * 109.46761 * 119.99815 * 2 1 3 30 30 H 1.09006 * 109.47539 * 63.95208 * 3 2 1 31 31 H 1.08998 * 109.47703 * 303.94453 * 3 2 1 32 32 H 0.96998 * 119.99581 * 180.02562 * 8 7 5 33 33 H 1.09000 * 109.56687 * 65.67382 * 17 15 13 34 34 H 1.09004 * 109.38539 * 305.63200 * 17 15 13 35 35 H 1.08994 * 109.46031 * 301.22357 * 18 17 15 36 36 H 1.09000 * 109.46043 * 181.25631 * 18 17 15 37 37 H 1.08994 * 109.50060 * 178.68614 * 19 18 17 38 38 H 1.09007 * 109.49710 * 58.58409 * 19 18 17 39 39 H 1.09008 * 109.58522 * 294.84959 * 20 19 18 40 40 H 1.08999 * 109.70450 * 174.49166 * 20 19 18 41 41 H 1.08998 * 109.47114 * 270.27885 * 23 22 21 42 42 H 1.09003 * 109.46704 * 30.27088 * 23 22 21 43 43 H 1.08995 * 109.47348 * 150.27503 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5019 1.4435 -0.0950 5 6 4.2630 1.4610 1.0450 6 1 5.3255 1.6446 0.9823 7 6 3.6675 1.2426 2.2814 8 7 2.4800 0.6840 2.3491 9 14 4.5550 1.7432 3.8470 10 1 5.8673 2.3460 3.5010 11 1 3.7335 2.7353 4.5861 12 1 4.7700 0.5458 4.6986 13 6 4.0987 1.4272 -1.3034 14 8 5.3052 1.3310 -1.3828 15 6 3.2668 1.5285 -2.5560 16 1 2.2100 1.4434 -2.3031 17 6 3.6517 0.4047 -3.5163 18 6 2.9098 0.5927 -4.8417 19 6 3.3154 1.9277 -5.4704 20 6 2.9221 3.0710 -4.5297 21 7 3.5144 2.8215 -3.2085 22 6 4.2754 3.7586 -2.6090 23 6 4.6357 5.0220 -3.3472 24 8 4.6743 3.5828 -1.4772 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.7356 1.9355 0.9233 31 1 1.6201 1.9763 -0.8525 32 1 2.0642 0.5319 3.2122 33 1 3.3802 -0.5568 -3.0806 34 1 4.7268 0.4331 -3.6940 35 1 1.8351 0.5885 -4.6599 36 1 3.1665 -0.2210 -5.5201 37 1 2.8045 2.0503 -6.4253 38 1 4.3937 1.9423 -5.6295 39 1 1.8365 3.1142 -4.4410 40 1 3.2943 4.0164 -4.9244 41 1 5.5666 4.8707 -3.8936 42 1 3.8396 5.2727 -4.0483 43 1 4.7613 5.8364 -2.6338 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195579129.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:28:32 Heat of formation + Delta-G solvation = -47.358349 kcal Electronic energy + Delta-G solvation = -24615.865819 eV Core-core repulsion = 21276.144997 eV Total energy + Delta-G solvation = -3339.720822 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.25342 -37.74014 -36.88197 -35.03624 -32.71955 -32.21329 -31.29891 -30.83798 -29.12950 -26.03028 -25.08974 -24.25688 -23.00872 -20.82787 -20.50562 -19.72479 -17.94878 -16.95126 -16.37749 -15.98894 -15.51809 -14.89966 -14.49697 -14.20912 -13.92308 -13.73425 -13.50341 -13.39116 -13.25368 -12.99789 -12.57488 -12.45683 -12.05654 -11.92304 -11.72578 -11.49989 -11.24703 -11.08442 -10.94862 -10.83606 -10.62644 -10.62239 -10.47293 -10.26020 -10.14091 -9.84997 -9.52718 -8.95130 -8.64137 -8.22889 -7.98405 -7.41786 -6.03631 -3.53895 3.12853 3.23356 3.33611 3.38066 3.48126 4.29318 4.34067 4.74294 4.82215 4.95561 5.08920 5.12168 5.27811 5.34283 5.44486 5.47762 5.51377 5.63492 5.76422 5.80369 5.87792 5.95519 6.05490 6.07336 6.08660 6.12116 6.20972 6.24444 6.38144 6.52082 6.63029 6.77592 6.89829 6.98865 7.04678 7.50262 7.70937 7.84540 8.04067 8.34954 8.73082 8.83128 9.47630 9.72457 10.29837 10.91182 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018620 B = 0.007017 C = 0.005790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.435528 B = 3989.217433 C = 4834.588177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.132 4.132 3 C 0.135 3.865 4 N -0.443 5.443 5 C -0.268 4.268 6 H 0.098 0.902 7 C 0.016 3.984 8 N -0.883 5.883 9 Si 0.920 3.080 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.286 1.286 13 C 0.481 3.519 14 O -0.584 6.584 15 C 0.126 3.874 16 H 0.082 0.918 17 C -0.119 4.119 18 C -0.117 4.117 19 C -0.135 4.135 20 C 0.107 3.893 21 N -0.608 5.608 22 C 0.493 3.507 23 C -0.169 4.169 24 O -0.481 6.481 25 H 0.052 0.948 26 H 0.032 0.968 27 H 0.039 0.961 28 H 0.022 0.978 29 H 0.118 0.882 30 H 0.096 0.904 31 H 0.023 0.977 32 H 0.260 0.740 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.076 0.924 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.359 3.669 -14.194 15.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.170 4.170 3 C 0.011 3.989 4 N -0.162 5.162 5 C -0.397 4.397 6 H 0.116 0.884 7 C -0.183 4.183 8 N -0.526 5.526 9 Si 0.748 3.252 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.212 1.212 13 C 0.269 3.731 14 O -0.468 6.468 15 C 0.020 3.980 16 H 0.100 0.900 17 C -0.157 4.157 18 C -0.155 4.155 19 C -0.173 4.173 20 C -0.016 4.016 21 N -0.346 5.346 22 C 0.280 3.720 23 C -0.229 4.229 24 O -0.352 6.352 25 H 0.071 0.929 26 H 0.051 0.949 27 H 0.058 0.942 28 H 0.041 0.959 29 H 0.135 0.865 30 H 0.114 0.886 31 H 0.041 0.959 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.104 0.896 41 H 0.106 0.894 42 H 0.095 0.905 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.623 3.524 -13.402 14.609 hybrid contribution 0.044 0.196 0.613 0.645 sum -4.579 3.720 -12.789 14.084 Atomic orbital electron populations 1.21611 0.97853 0.99767 1.00169 1.22210 0.93373 0.98590 1.02842 1.21376 0.80980 0.96409 1.00101 1.43521 1.04982 1.63413 1.04291 1.19731 0.94081 1.43047 0.82794 0.88376 1.25153 0.96846 0.97353 0.98971 1.70019 1.16352 1.41726 1.24500 0.85939 0.79533 0.78134 0.81566 1.19579 1.21016 1.21214 1.19107 0.87983 0.82415 0.83558 1.90473 1.14648 1.55794 1.85927 1.21267 1.00225 0.83122 0.93372 0.90010 1.21678 1.01757 0.97813 0.94493 1.21518 1.00229 0.96959 0.96785 1.21922 1.02037 0.95284 0.98061 1.21760 0.98093 0.98801 0.82931 1.48078 1.52021 1.15191 1.19299 1.20806 0.78534 0.85200 0.87489 1.21937 1.02959 0.96221 1.01769 1.90915 1.50450 1.76373 1.17467 0.92912 0.94931 0.94230 0.95896 0.86467 0.88573 0.95870 0.92895 0.90887 0.90626 0.91883 0.91736 0.91063 0.91429 0.91671 0.89567 0.89365 0.90492 0.89357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.91 37.16 0.37 -2.04 16 2 C -0.13 -2.87 5.67 -26.73 -0.15 -3.02 16 3 C 0.14 3.21 4.25 -4.04 -0.02 3.20 16 4 N -0.44 -12.05 2.57 -114.81 -0.29 -12.35 16 5 C -0.27 -7.96 9.44 -14.94 -0.14 -8.10 16 6 H 0.10 3.16 7.32 -52.48 -0.38 2.78 16 7 C 0.02 0.44 5.05 -17.47 -0.09 0.35 16 8 N -0.88 -23.40 7.86 55.50 0.44 -22.97 16 9 Si 0.92 22.07 29.59 -169.99 -5.03 17.04 16 10 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 13 C 0.48 12.52 3.87 -10.98 -0.04 12.48 16 14 O -0.58 -17.45 14.68 -18.21 -0.27 -17.72 16 15 C 0.13 2.50 2.87 -68.97 -0.20 2.30 16 16 H 0.08 1.57 5.48 -51.93 -0.28 1.29 16 17 C -0.12 -2.01 5.25 -26.83 -0.14 -2.15 16 18 C -0.12 -1.41 5.89 -26.69 -0.16 -1.57 16 19 C -0.13 -1.40 6.08 -26.61 -0.16 -1.57 16 20 C 0.11 1.22 6.29 -3.71 -0.02 1.20 16 21 N -0.61 -10.43 2.98 -166.78 -0.50 -10.92 16 22 C 0.49 9.50 7.58 -10.98 -0.08 9.42 16 23 C -0.17 -2.18 9.63 36.01 0.35 -1.83 16 24 O -0.48 -12.34 13.12 -18.20 -0.24 -12.57 16 25 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.03 0.51 8.14 -51.92 -0.42 0.09 16 27 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.12 2.94 5.72 -51.93 -0.30 2.64 16 30 H 0.10 2.49 6.10 -51.93 -0.32 2.18 16 31 H 0.02 0.50 5.99 -51.93 -0.31 0.19 16 32 H 0.26 6.59 8.31 -40.82 -0.34 6.25 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.08 1.43 7.79 -51.93 -0.40 1.03 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 39 H 0.07 0.67 8.14 -51.92 -0.42 0.24 16 40 H 0.09 0.76 5.36 -51.93 -0.28 0.48 16 41 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.08 0.72 5.95 -51.93 -0.31 0.41 16 43 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 329.60 15.07 4.97 4.97 Total: -1.00 -35.04 329.60 -8.21 -43.24 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -6.79 Total: 2.59 kcal Atomic # 6 Polarization: 9.16 SS G_CDS: -0.49 Total: 8.67 kcal Atomic # 7 Polarization: -45.88 SS G_CDS: -0.35 Total: -46.23 kcal Atomic # 8 Polarization: -29.78 SS G_CDS: -0.51 Total: -30.29 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.03 Total: 17.04 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -35.04 -8.21 -43.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195579129.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.115 kcal (2) G-P(sol) polarization free energy of solvation -35.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds