Wall clock time and date at job start Tue Mar 31 2020 02:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46944 * 2 1 4 4 C 1.53000 * 109.47265 * 240.00398 * 2 1 3 5 5 C 1.50697 * 109.47272 * 120.00160 * 2 1 3 6 6 O 1.21274 * 120.00134 * 0.02562 * 5 2 1 7 7 N 1.34780 * 120.00107 * 180.02562 * 5 2 1 8 8 C 1.46497 * 120.00192 * 180.02562 * 7 5 2 9 9 C 1.50704 * 109.47248 * 179.97438 * 8 7 5 10 10 O 1.21282 * 119.99598 * 5.36080 * 9 8 7 11 11 N 1.34773 * 120.00038 * 185.36127 * 9 8 7 12 12 C 1.46497 * 119.99973 * 185.07980 * 11 9 8 13 13 C 1.53001 * 109.47358 * 184.03602 * 12 11 9 14 14 C 1.50702 * 115.55233 * 294.92846 * 13 12 11 15 15 H 1.08004 * 120.00041 * 114.81521 * 14 13 12 16 16 C 1.37878 * 119.99484 * 294.54628 * 14 13 12 17 17 N 1.31518 * 119.99672 * 174.41746 * 16 14 13 18 18 Si 1.86803 * 120.00049 * 354.41245 * 16 14 13 19 19 H 1.48494 * 109.47103 * 93.54272 * 18 16 14 20 20 H 1.48498 * 109.46797 * 213.53806 * 18 16 14 21 21 H 1.48496 * 109.47390 * 333.53688 * 18 16 14 22 22 C 1.53001 * 117.49530 * 80.59249 * 13 12 11 23 23 C 1.52998 * 117.50144 * 149.24987 * 13 12 11 24 24 H 1.09002 * 109.46952 * 299.99644 * 1 2 3 25 25 H 1.09000 * 109.47336 * 59.99670 * 1 2 3 26 26 H 1.09004 * 109.46698 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46709 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.46935 * 300.00140 * 3 2 1 29 29 H 1.08997 * 109.46570 * 60.00548 * 3 2 1 30 30 H 1.09004 * 109.47091 * 299.99548 * 4 2 1 31 31 H 1.09000 * 109.46999 * 59.99726 * 4 2 1 32 32 H 1.08995 * 109.47387 * 179.97438 * 4 2 1 33 33 H 0.97006 * 119.99893 * 359.97438 * 7 5 2 34 34 H 1.08994 * 109.47606 * 59.99299 * 8 7 5 35 35 H 1.09002 * 109.46756 * 299.99149 * 8 7 5 36 36 H 0.97003 * 120.00079 * 5.07006 * 11 9 8 37 37 H 1.08995 * 109.47419 * 64.03559 * 12 11 9 38 38 H 1.09006 * 109.47150 * 304.03688 * 12 11 9 39 39 H 0.96996 * 119.99733 * 179.97438 * 17 16 14 40 40 H 1.09003 * 117.50136 * 215.00195 * 22 13 12 41 41 H 1.09001 * 117.50224 * 0.02580 * 22 13 12 42 42 H 1.08997 * 117.49760 * 359.97438 * 23 13 12 43 43 H 1.09003 * 117.49803 * 144.97386 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2304 6 8 1.2443 -1.1718 2.0285 7 7 3.3575 -0.8331 1.4439 8 6 3.8458 -1.5242 2.6398 9 6 5.3529 -1.5241 2.6398 10 8 5.9592 -0.9158 1.7835 11 7 6.0268 -2.2000 3.5913 12 6 7.4874 -2.1097 3.6584 13 6 8.0063 -3.0425 4.7546 14 6 7.5951 -2.6860 6.1599 15 1 6.9521 -3.3494 6.7192 16 6 8.0445 -1.5155 6.7336 17 7 7.5998 -1.1497 7.9160 18 14 9.2851 -0.4493 5.8314 19 1 8.5685 0.5892 5.0485 20 1 10.1838 0.2051 6.8159 21 1 10.0891 -1.2948 4.9129 22 6 8.1402 -4.5279 4.4131 23 6 9.3925 -3.6599 4.5592 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 -1.7489 -1.2493 31 1 1.6766 -0.2073 -2.1392 32 1 3.1300 -0.7208 -1.2495 33 1 3.9878 -0.4644 0.8054 34 1 3.4829 -2.5520 2.6392 35 1 3.4822 -1.0110 3.5299 36 1 5.5447 -2.7461 4.2319 37 1 7.7780 -1.0842 3.8865 38 1 7.9141 -2.4035 2.6993 39 1 7.9162 -0.3265 8.3198 40 1 7.9310 -5.2473 5.2049 41 1 7.8590 -4.8405 3.4075 42 1 9.9346 -3.4018 3.6495 43 1 10.0073 -3.8077 5.4471 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331811048.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:33 Heat of formation + Delta-G solvation = -67.178292 kcal Electronic energy + Delta-G solvation = -22428.729725 eV Core-core repulsion = 19088.149446 eV Total energy + Delta-G solvation = -3340.580279 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.38777 -39.22573 -37.14889 -35.78577 -34.45329 -33.60490 -32.24352 -28.81261 -27.60883 -27.31205 -26.36328 -24.97144 -22.69365 -21.70218 -20.24216 -19.64314 -19.17264 -17.40072 -16.73447 -16.26510 -15.90208 -15.79394 -15.18097 -15.06324 -14.71152 -14.22052 -13.97355 -13.77860 -13.56116 -13.08315 -12.85478 -12.73860 -12.59223 -12.44572 -12.30508 -12.13760 -12.01623 -11.94182 -11.19838 -11.16561 -11.13983 -10.79762 -10.66459 -10.34900 -9.84277 -9.78975 -9.52474 -9.23595 -9.16849 -8.87449 -8.57405 -8.45447 -6.23228 -4.26806 2.57115 2.83940 2.91680 3.22680 3.33570 3.38592 3.69612 4.32796 4.42000 4.52856 4.62818 4.74624 4.97541 5.10402 5.12583 5.29962 5.34424 5.38009 5.46929 5.48509 5.56559 5.59661 5.62894 5.68830 5.85003 5.89081 5.96169 6.05388 6.06835 6.12237 6.26685 6.37669 6.42071 6.63862 6.83491 6.93622 7.04927 7.45741 7.60314 7.93018 8.16861 8.34729 8.50087 8.78325 9.39789 10.87675 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024646 B = 0.003672 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.796344 B = 7623.468266 C = 7831.792562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.085 4.085 3 C -0.143 4.143 4 C -0.142 4.142 5 C 0.522 3.478 6 O -0.541 6.541 7 N -0.714 5.714 8 C 0.098 3.902 9 C 0.502 3.498 10 O -0.558 6.558 11 N -0.693 5.693 12 C 0.153 3.847 13 C -0.019 4.019 14 C -0.492 4.492 15 H 0.079 0.921 16 C 0.084 3.916 17 N -0.891 5.891 18 Si 0.866 3.134 19 H -0.278 1.278 20 H -0.291 1.291 21 H -0.248 1.248 22 C -0.180 4.180 23 C -0.184 4.184 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.411 0.589 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.410 0.590 37 H 0.058 0.942 38 H 0.052 0.948 39 H 0.266 0.734 40 H 0.086 0.914 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.016 1.277 -16.085 18.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.088 4.088 3 C -0.200 4.200 4 C -0.199 4.199 5 C 0.308 3.692 6 O -0.418 6.418 7 N -0.369 5.369 8 C -0.029 4.029 9 C 0.287 3.713 10 O -0.438 6.438 11 N -0.342 5.342 12 C 0.030 3.970 13 C -0.020 4.020 14 C -0.529 4.529 15 H 0.097 0.903 16 C -0.120 4.120 17 N -0.527 5.527 18 Si 0.693 3.307 19 H -0.205 1.205 20 H -0.217 1.217 21 H -0.172 1.172 22 C -0.217 4.217 23 C -0.222 4.222 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.249 0.751 34 H 0.114 0.886 35 H 0.120 0.880 36 H 0.246 0.754 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.105 0.895 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.101 1.515 -15.916 18.397 hybrid contribution 0.896 0.600 -0.162 1.091 sum -8.205 2.116 -16.078 18.174 Atomic orbital electron populations 1.21660 0.91868 1.02853 1.02042 1.20799 0.98023 0.96505 0.93477 1.21894 1.01612 0.93629 1.02905 1.21886 1.01532 1.00578 0.95950 1.20576 0.81712 0.79467 0.87403 1.90698 1.55361 1.48685 1.47055 1.45743 1.07503 1.58569 1.25109 1.21099 0.91765 0.99844 0.90219 1.20414 0.89408 0.79524 0.81964 1.90640 1.70029 1.45115 1.38035 1.45774 1.08650 1.47995 1.31798 1.21137 0.78495 1.00015 0.97346 1.19606 0.96333 0.90642 0.95461 1.20241 1.31519 1.06526 0.94654 0.90307 1.24925 0.95541 0.97011 0.94555 1.69891 1.42773 1.23710 1.16299 0.87040 0.82436 0.81057 0.80183 1.20479 1.21716 1.17186 1.22809 1.03574 0.95008 1.00297 1.23034 0.91629 1.06230 1.01318 0.91863 0.92050 0.91907 0.91820 0.91299 0.91925 0.91988 0.91302 0.91884 0.75134 0.88573 0.88035 0.75387 0.92347 0.93005 0.92386 0.89526 0.90890 0.91099 0.89229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.17 7.76 37.16 0.29 -0.88 16 2 C -0.08 -0.82 0.87 -155.66 -0.14 -0.96 16 3 C -0.14 -1.20 8.37 37.16 0.31 -0.89 16 4 C -0.14 -1.13 8.37 37.16 0.31 -0.82 16 5 C 0.52 6.87 6.48 -10.99 -0.07 6.80 16 6 O -0.54 -8.91 15.98 5.56 0.09 -8.82 16 7 N -0.71 -9.32 5.31 -61.48 -0.33 -9.65 16 8 C 0.10 1.37 6.16 -5.19 -0.03 1.34 16 9 C 0.50 8.45 7.89 -10.98 -0.09 8.37 16 10 O -0.56 -10.74 15.67 5.56 0.09 -10.66 16 11 N -0.69 -12.38 5.48 -60.29 -0.33 -12.71 16 12 C 0.15 3.12 5.15 -4.04 -0.02 3.10 16 13 C -0.02 -0.41 0.84 -155.66 -0.13 -0.54 16 14 C -0.49 -12.56 9.16 -34.44 -0.32 -12.87 16 15 H 0.08 2.18 8.06 -52.48 -0.42 1.76 16 16 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 17 N -0.89 -25.81 13.96 55.43 0.77 -25.03 16 18 Si 0.87 20.69 24.97 -169.99 -4.24 16.44 16 19 H -0.28 -6.77 7.03 56.52 0.40 -6.37 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.25 -5.55 5.72 56.52 0.32 -5.23 16 22 C -0.18 -3.31 9.96 -26.69 -0.27 -3.58 16 23 C -0.18 -3.62 8.03 -26.70 -0.21 -3.84 16 24 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 27 H 0.06 0.54 7.56 -51.93 -0.39 0.15 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.50 7.57 -51.93 -0.39 0.11 16 33 H 0.41 5.12 6.29 -40.82 -0.26 4.87 16 34 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 35 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 36 H 0.41 6.86 8.34 -40.82 -0.34 6.52 16 37 H 0.06 1.32 5.06 -51.93 -0.26 1.06 16 38 H 0.05 1.01 8.07 -51.93 -0.42 0.59 16 39 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 40 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 41 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 43 H 0.09 1.82 8.14 -51.93 -0.42 1.40 16 LS Contribution 350.74 15.07 5.29 5.29 Total: -1.00 -30.91 350.74 -6.32 -37.23 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -7.20 Total: 10.51 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: -0.46 Total: -2.61 kcal Atomic # 7 Polarization: -47.50 SS G_CDS: 0.12 Total: -47.39 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: 0.18 Total: -19.48 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.24 Total: 16.44 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.91 -6.32 -37.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331811048.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.948 kcal (2) G-P(sol) polarization free energy of solvation -30.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds