Wall clock time and date at job start Tue Mar 31 2020 02:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08995 * 109.47512 * 2 1 4 4 C 1.53006 * 109.47027 * 240.00161 * 2 1 3 5 5 C 1.53001 * 109.47294 * 180.02562 * 4 2 1 6 6 C 1.52992 * 109.47157 * 59.99871 * 5 4 2 7 7 C 1.52996 * 109.47461 * 300.00087 * 6 5 4 8 8 H 1.09002 * 109.47131 * 300.00044 * 7 6 5 9 9 C 1.53000 * 109.47539 * 179.97438 * 7 6 5 10 10 C 1.50707 * 109.47032 * 64.99867 * 9 7 6 11 11 O 1.21282 * 119.99524 * 0.02562 * 10 9 7 12 12 N 1.34773 * 119.99914 * 180.02562 * 10 9 7 13 13 C 1.46506 * 119.99778 * 179.97438 * 12 10 9 14 14 C 1.50696 * 109.46871 * 179.97438 * 13 12 10 15 15 O 1.21292 * 120.00262 * 0.02562 * 14 13 12 16 16 N 1.34784 * 119.99627 * 179.97438 * 14 13 12 17 17 C 1.37090 * 119.99714 * 180.02562 * 16 14 13 18 18 H 1.07999 * 120.00232 * 0.02562 * 17 16 14 19 19 C 1.38955 * 119.99992 * 180.02562 * 17 16 14 20 20 N 1.31413 * 120.00236 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99845 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47174 * 270.00316 * 21 19 17 23 23 H 1.48501 * 109.47062 * 30.00267 * 21 19 17 24 24 H 1.48504 * 109.46913 * 150.00066 * 21 19 17 25 25 C 1.53003 * 109.47172 * 60.00169 * 7 6 5 26 26 H 1.09007 * 109.46811 * 299.99788 * 1 2 3 27 27 H 1.08996 * 109.47361 * 59.99322 * 1 2 3 28 28 H 1.08995 * 109.47512 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47180 * 300.00220 * 4 2 1 30 30 H 1.09005 * 109.46737 * 60.00329 * 4 2 1 31 31 H 1.08998 * 109.47188 * 180.02562 * 5 4 2 32 32 H 1.09002 * 109.46993 * 300.00098 * 5 4 2 33 33 H 1.09001 * 109.47190 * 180.02562 * 6 5 4 34 34 H 1.09002 * 109.46984 * 60.00221 * 6 5 4 35 35 H 1.09005 * 109.47151 * 305.00205 * 9 7 6 36 36 H 1.09002 * 109.47653 * 184.99979 * 9 7 6 37 37 H 0.96990 * 120.00366 * 0.02562 * 12 10 9 38 38 H 1.09005 * 109.46943 * 60.00092 * 13 12 10 39 39 H 1.09002 * 109.47064 * 300.00355 * 13 12 10 40 40 H 0.96999 * 120.00048 * 0.02562 * 16 14 13 41 41 H 0.97001 * 119.99781 * 179.97438 * 20 19 17 42 42 H 1.08997 * 109.47192 * 59.99456 * 25 7 6 43 43 H 1.08994 * 109.47335 * 180.02562 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5699 -0.7218 -1.2491 6 6 4.0794 -1.4434 0.0001 7 6 3.5695 -0.7223 1.2494 8 1 3.9332 0.3053 1.2496 9 6 4.0785 -1.4443 2.4986 10 6 5.5805 -1.3391 2.5627 11 8 6.1843 -0.7447 1.6948 12 7 6.2527 -1.9055 3.5843 13 6 7.7129 -1.8037 3.6462 14 6 8.2142 -2.5147 4.8767 15 8 7.4292 -3.0539 5.6278 16 7 9.5352 -2.5523 5.1421 17 6 9.9913 -3.1996 6.2612 18 1 9.2922 -3.6797 6.9299 19 6 11.3530 -3.2380 6.5351 20 7 11.7902 -3.8580 7.6081 21 14 12.5622 -2.4082 5.3780 22 1 12.9964 -3.3759 4.3386 23 1 11.9067 -1.2449 4.7281 24 1 13.7446 -1.9442 6.1473 25 6 2.0395 -0.7217 1.2492 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.6765 -1.7489 -1.2494 30 1 1.6766 -0.2073 -2.1393 31 1 3.9332 -1.2352 -2.1393 32 1 3.9336 0.3057 -1.2488 33 1 5.1694 -1.4435 0.0005 34 1 3.7157 -2.4710 -0.0002 35 1 3.7894 -2.4944 2.4545 36 1 3.6439 -0.9848 3.3864 37 1 5.7699 -2.3811 4.2781 38 1 8.0024 -0.7537 3.6905 39 1 8.1472 -2.2631 2.7583 40 1 10.1630 -2.1215 4.5412 41 1 12.7409 -3.8851 7.7990 42 1 1.6758 -1.7492 1.2489 43 1 1.6762 -0.2076 2.1389 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343522930.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:44 Heat of formation + Delta-G solvation = -110.488736 kcal Electronic energy + Delta-G solvation = -21896.752146 eV Core-core repulsion = 18554.293786 eV Total energy + Delta-G solvation = -3342.458361 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.08790 -38.84147 -38.07842 -34.55556 -33.77293 -33.47486 -31.96427 -31.80627 -28.77311 -26.80914 -26.39078 -24.23832 -22.18010 -21.25847 -19.99893 -19.90688 -19.56511 -18.58853 -17.04155 -15.84236 -15.62703 -15.52138 -15.24636 -14.93384 -14.64708 -14.53757 -14.14030 -13.97717 -13.54585 -13.31249 -13.00816 -12.58758 -12.49182 -12.46003 -12.20345 -12.10384 -11.99501 -11.65348 -11.45541 -11.24833 -11.12220 -10.94586 -10.65856 -10.55778 -10.40151 -10.12175 -10.07852 -9.71574 -9.53975 -8.85381 -8.78982 -8.32188 -6.42371 -3.94981 2.79391 2.98238 3.02881 3.10901 3.32354 3.54660 4.02050 4.44058 4.49622 4.52472 4.58837 4.86905 4.88704 5.08504 5.10846 5.12378 5.27340 5.32497 5.34665 5.42531 5.50051 5.52218 5.61500 5.65250 5.67092 5.69919 5.77641 5.80610 5.82419 5.87080 6.05191 6.08385 6.11984 6.18363 6.38091 6.41046 6.62194 7.42519 7.76105 7.98822 8.38322 8.46141 8.80032 9.28171 9.61772 10.69767 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.044135 B = 0.002698 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.261762 B =10374.919502 C =10820.251397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 H 0.069 0.931 4 C -0.114 4.114 5 C -0.117 4.117 6 C -0.121 4.121 7 C -0.069 4.069 8 H 0.077 0.923 9 C -0.137 4.137 10 C 0.511 3.489 11 O -0.547 6.547 12 N -0.710 5.710 13 C 0.106 3.894 14 C 0.437 3.563 15 O -0.579 6.579 16 N -0.577 5.577 17 C -0.310 4.310 18 H 0.122 0.878 19 C 0.045 3.955 20 N -0.874 5.874 21 Si 0.879 3.121 22 H -0.269 1.269 23 H -0.267 1.267 24 H -0.275 1.275 25 C -0.110 4.110 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.083 0.917 34 H 0.054 0.946 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.412 0.588 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.374 0.626 41 H 0.276 0.724 42 H 0.062 0.938 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.662 7.243 -15.990 24.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.110 4.110 3 H 0.087 0.913 4 C -0.152 4.152 5 C -0.155 4.155 6 C -0.158 4.158 7 C -0.088 4.088 8 H 0.096 0.904 9 C -0.177 4.177 10 C 0.298 3.702 11 O -0.426 6.426 12 N -0.365 5.365 13 C -0.022 4.022 14 C 0.224 3.776 15 O -0.464 6.464 16 N -0.214 5.214 17 C -0.439 4.439 18 H 0.139 0.861 19 C -0.159 4.159 20 N -0.513 5.513 21 Si 0.705 3.295 22 H -0.194 1.194 23 H -0.192 1.192 24 H -0.200 1.200 25 C -0.147 4.147 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.102 0.898 34 H 0.073 0.927 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.250 0.750 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.208 0.792 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.542 7.218 -15.932 24.772 hybrid contribution 0.992 0.327 -0.335 1.097 sum -16.550 7.546 -16.267 24.402 Atomic orbital electron populations 1.21834 0.95461 1.01693 1.01478 1.21118 0.95101 0.99735 0.95086 0.91281 1.21615 0.95944 1.00425 0.97173 1.21498 0.95059 1.00955 0.97971 1.21718 1.02521 0.98204 0.93375 1.20893 0.94359 1.00308 0.93242 0.90418 1.21741 0.92010 1.03344 1.00602 1.20669 0.90156 0.78345 0.81069 1.90644 1.70444 1.42865 1.38625 1.45780 1.07111 1.56402 1.27162 1.20958 0.81618 1.01416 0.98204 1.19669 0.83296 0.86375 0.88309 1.90537 1.54764 1.50187 1.50883 1.42135 1.05755 1.49432 1.24100 1.19441 0.93196 1.30716 1.00539 0.86086 1.25074 0.96984 0.97177 0.96702 1.69619 1.15537 1.41183 1.24949 0.86667 0.81743 0.79951 0.81111 1.19385 1.19239 1.19957 1.21669 0.94855 1.00742 0.97473 0.92765 0.92902 0.92772 0.92164 0.92440 0.92326 0.92065 0.89825 0.92744 0.88885 0.88856 0.75049 0.89840 0.89829 0.79248 0.91371 0.91883 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.19 37.15 0.34 -0.63 16 2 C -0.09 -0.71 2.72 -90.62 -0.25 -0.96 16 3 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.11 -0.90 5.20 -26.73 -0.14 -1.04 16 5 C -0.12 -1.09 5.92 -26.73 -0.16 -1.25 16 6 C -0.12 -1.28 4.94 -26.74 -0.13 -1.42 16 7 C -0.07 -0.69 1.84 -90.62 -0.17 -0.86 16 8 H 0.08 0.89 7.96 -51.93 -0.41 0.48 16 9 C -0.14 -1.41 5.17 -27.88 -0.14 -1.56 16 10 C 0.51 7.28 7.55 -10.98 -0.08 7.20 16 11 O -0.55 -9.24 13.97 5.56 0.08 -9.16 16 12 N -0.71 -10.99 5.53 -61.47 -0.34 -11.33 16 13 C 0.11 1.82 6.15 -5.19 -0.03 1.79 16 14 C 0.44 9.58 7.85 -10.98 -0.09 9.50 16 15 O -0.58 -14.57 15.24 5.55 0.08 -14.49 16 16 N -0.58 -13.40 5.09 -10.96 -0.06 -13.46 16 17 C -0.31 -8.55 10.16 -14.93 -0.15 -8.70 16 18 H 0.12 3.79 7.39 -52.49 -0.39 3.40 16 19 C 0.04 1.20 5.50 -17.47 -0.10 1.11 16 20 N -0.87 -24.92 13.96 55.50 0.77 -24.15 16 21 Si 0.88 18.98 27.74 -169.99 -4.71 14.27 16 22 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 23 H -0.27 -5.28 6.52 56.52 0.37 -4.92 16 24 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 25 C -0.11 -0.89 4.48 -26.73 -0.12 -1.01 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.08 1.11 5.95 -51.93 -0.31 0.80 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.41 6.29 7.44 -40.82 -0.30 5.98 16 38 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 39 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 40 H 0.37 7.68 5.76 -40.82 -0.24 7.45 16 41 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 343.88 15.07 5.18 5.18 Total: -1.00 -31.21 343.88 -7.36 -38.57 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: -7.16 Total: 12.38 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: -1.21 Total: 2.18 kcal Atomic # 7 Polarization: -49.32 SS G_CDS: 0.38 Total: -48.94 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: 0.16 Total: -23.65 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -4.71 Total: 14.27 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.21 -7.36 -38.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343522930.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.914 kcal (2) G-P(sol) polarization free energy of solvation -31.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds