Wall clock time and date at job start Tue Mar 31 2020 02:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09004 * 109.47037 * 2 1 4 4 C 1.53001 * 109.47150 * 119.99333 * 2 1 3 5 5 C 1.52997 * 109.47312 * 60.00333 * 4 2 1 6 6 C 1.52997 * 109.46785 * 59.99836 * 5 4 2 7 7 C 1.53002 * 109.47659 * 299.99968 * 6 5 4 8 8 H 1.08999 * 109.46820 * 300.00859 * 7 6 5 9 9 C 1.52992 * 109.47183 * 180.02562 * 7 6 5 10 10 C 1.50703 * 109.47261 * 65.00478 * 9 7 6 11 11 O 1.21283 * 120.00011 * 359.97438 * 10 9 7 12 12 N 1.34775 * 120.00072 * 179.97438 * 10 9 7 13 13 C 1.46499 * 120.00181 * 179.97438 * 12 10 9 14 14 C 1.50700 * 109.47257 * 179.97438 * 13 12 10 15 15 O 1.21293 * 119.99810 * 359.97438 * 14 13 12 16 16 N 1.34777 * 119.99675 * 180.27849 * 14 13 12 17 17 C 1.37102 * 119.99634 * 179.72687 * 16 14 13 18 18 H 1.08002 * 119.99868 * 359.97438 * 17 16 14 19 19 C 1.38945 * 119.99860 * 179.97438 * 17 16 14 20 20 N 1.31414 * 119.99894 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99956 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47230 * 0.02562 * 21 19 17 23 23 H 1.48493 * 109.46892 * 120.00602 * 21 19 17 24 24 H 1.48503 * 109.46797 * 240.00208 * 21 19 17 25 25 C 1.52997 * 109.47719 * 239.99552 * 2 1 3 26 26 H 1.09010 * 109.47275 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47728 * 300.00584 * 1 2 3 28 28 H 1.09001 * 109.47399 * 60.01167 * 1 2 3 29 29 H 1.09007 * 109.47218 * 180.02562 * 4 2 1 30 30 H 1.09005 * 109.47241 * 300.00115 * 4 2 1 31 31 H 1.08997 * 109.47591 * 180.02562 * 5 4 2 32 32 H 1.09007 * 109.46998 * 300.00159 * 5 4 2 33 33 H 1.09011 * 109.46778 * 180.02562 * 6 5 4 34 34 H 1.09001 * 109.47400 * 60.00999 * 6 5 4 35 35 H 1.09000 * 109.47686 * 305.00089 * 9 7 6 36 36 H 1.09006 * 109.46660 * 185.00129 * 9 7 6 37 37 H 0.97002 * 120.00040 * 359.97438 * 12 10 9 38 38 H 1.09009 * 109.46700 * 59.99666 * 13 12 10 39 39 H 1.08998 * 109.46827 * 300.00240 * 13 12 10 40 40 H 0.97001 * 120.00485 * 359.71840 * 16 14 13 41 41 H 0.97004 * 119.99542 * 179.97438 * 20 19 17 42 42 H 1.08993 * 109.47366 * 179.97438 * 25 2 1 43 43 H 1.09000 * 109.46810 * 59.99464 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7211 1.2493 5 6 1.5300 -2.1636 1.2495 6 6 2.0401 -2.8849 0.0003 7 6 1.5301 -2.1639 -1.2491 8 1 0.4401 -2.1639 -1.2490 9 6 2.0397 -2.8856 -2.4981 10 6 1.4383 -4.2660 -2.5612 11 8 0.6774 -4.6362 -1.6923 12 7 1.7460 -5.0890 -3.5831 13 6 1.1619 -6.4311 -3.6441 14 6 1.6628 -7.1415 -4.8752 15 8 2.4317 -6.5815 -5.6279 16 7 1.2515 -8.3967 -5.1431 17 6 1.7029 -9.0409 -6.2660 18 1 2.3876 -8.5424 -6.9361 19 6 1.2794 -10.3352 -6.5419 20 7 0.4458 -10.9416 -5.7268 21 14 1.8937 -11.2127 -8.0723 22 1 2.8156 -10.3193 -8.8187 23 1 2.6149 -12.4493 -7.6778 24 1 0.7393 -11.5672 -8.9366 25 6 2.0400 -0.7213 -1.2491 26 1 -0.3634 -1.0278 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5136 -0.8901 29 1 3.1300 -0.7207 1.2496 30 1 1.6766 -0.2072 2.1393 31 1 1.8929 -2.6772 2.1397 32 1 0.4400 -2.1637 1.2495 33 1 1.6764 -3.9125 0.0002 34 1 3.1301 -2.8850 0.0004 35 1 3.1260 -2.9641 -2.4547 36 1 1.7513 -2.3227 -3.3859 37 1 2.3543 -4.7928 -4.2782 38 1 0.0755 -6.3529 -3.6869 39 1 1.4510 -6.9939 -2.7565 40 1 0.6364 -8.8444 -4.5414 41 1 0.1499 -11.8450 -5.9197 42 1 3.1300 -0.7209 -1.2493 43 1 1.6767 -0.2076 -2.1391 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343522933.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:46 Heat of formation + Delta-G solvation = -113.361970 kcal Electronic energy + Delta-G solvation = -22031.196778 eV Core-core repulsion = 18688.613825 eV Total energy + Delta-G solvation = -3342.582954 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.11629 -38.86514 -37.97998 -34.46218 -33.66288 -33.18519 -31.59462 -31.38469 -28.58897 -26.93532 -26.45900 -24.38670 -22.38330 -21.64603 -19.99285 -19.51421 -18.77211 -18.10196 -16.98116 -15.96779 -15.65530 -15.47402 -15.16150 -14.75906 -14.61583 -14.33879 -14.09425 -13.98904 -13.71496 -13.24542 -12.91681 -12.76852 -12.21504 -12.19181 -12.06761 -11.80333 -11.64571 -11.54749 -11.48637 -11.15413 -11.13526 -10.95038 -10.41934 -10.39145 -10.33573 -10.16359 -10.07811 -9.65885 -9.44782 -8.74732 -8.64153 -8.11280 -6.52671 -3.94706 2.87656 3.09465 3.21387 3.27533 3.43264 3.73139 4.10703 4.52692 4.56062 4.58619 4.87705 4.93664 4.98129 5.09153 5.15967 5.21195 5.26528 5.37090 5.46180 5.49572 5.52088 5.58404 5.64217 5.74410 5.81344 5.85678 5.90590 5.93120 5.96557 6.06775 6.10776 6.15079 6.16766 6.23841 6.46309 6.48182 6.73913 7.45127 7.84935 7.91397 8.43419 8.50821 9.03613 9.38334 9.86135 10.64326 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.051017 B = 0.002601 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.706972 B =10762.372431 C =10981.842847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.090 4.090 3 H 0.065 0.935 4 C -0.115 4.115 5 C -0.119 4.119 6 C -0.120 4.120 7 C -0.071 4.071 8 H 0.081 0.919 9 C -0.137 4.137 10 C 0.510 3.490 11 O -0.547 6.547 12 N -0.710 5.710 13 C 0.108 3.892 14 C 0.428 3.572 15 O -0.598 6.598 16 N -0.550 5.550 17 C -0.304 4.304 18 H 0.106 0.894 19 C 0.025 3.975 20 N -0.895 5.895 21 Si 0.933 3.067 22 H -0.267 1.267 23 H -0.280 1.280 24 H -0.280 1.280 25 C -0.110 4.110 26 H 0.065 0.935 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.084 0.916 34 H 0.053 0.947 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.410 0.590 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.396 0.604 41 H 0.274 0.726 42 H 0.062 0.938 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.488 18.251 11.305 21.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.108 4.108 3 H 0.084 0.916 4 C -0.152 4.152 5 C -0.156 4.156 6 C -0.158 4.158 7 C -0.090 4.090 8 H 0.100 0.900 9 C -0.177 4.177 10 C 0.296 3.704 11 O -0.426 6.426 12 N -0.364 5.364 13 C -0.019 4.019 14 C 0.214 3.786 15 O -0.484 6.484 16 N -0.185 5.185 17 C -0.434 4.434 18 H 0.124 0.876 19 C -0.178 4.178 20 N -0.535 5.535 21 Si 0.759 3.241 22 H -0.191 1.191 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.148 4.148 26 H 0.084 0.916 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.102 0.898 34 H 0.072 0.928 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.248 0.752 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.230 0.770 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.370 18.125 11.389 21.450 hybrid contribution 0.175 -0.746 -0.768 1.085 sum 1.545 17.378 10.621 20.425 Atomic orbital electron populations 1.21961 0.95366 1.02494 1.01187 1.21063 0.95985 0.98721 0.95069 0.91613 1.21582 1.00341 0.96089 0.97196 1.21537 1.01112 0.95059 0.97922 1.21714 0.99772 1.00917 0.93374 1.20933 1.01382 0.93425 0.93214 0.90040 1.21743 1.02104 0.93302 1.00593 1.20653 0.81537 0.87001 0.81176 1.90644 1.36536 1.76819 1.38579 1.45791 1.48998 1.14661 1.26934 1.20934 0.98793 0.83812 0.98385 1.19777 0.86673 0.83802 0.88377 1.90494 1.39889 1.66737 1.51326 1.41816 1.41260 1.11910 1.23476 1.19780 1.26090 0.96637 1.00879 0.87634 1.25333 0.96400 0.96785 0.99257 1.69626 1.32235 1.14428 1.37213 0.85755 0.78604 0.79067 0.80653 1.19130 1.20603 1.20597 1.21634 1.00523 0.95155 0.97491 0.91624 0.93107 0.92938 0.92235 0.92458 0.92446 0.91702 0.89794 0.92828 0.89004 0.88973 0.75204 0.89963 0.89971 0.77041 0.91632 0.91963 0.92007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 8.50 37.15 0.32 -0.93 16 2 C -0.09 -0.72 3.19 -90.63 -0.29 -1.01 16 3 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 4 C -0.11 -0.94 5.45 -26.73 -0.15 -1.09 16 5 C -0.12 -1.15 5.65 -26.73 -0.15 -1.30 16 6 C -0.12 -1.34 4.94 -26.73 -0.13 -1.47 16 7 C -0.07 -0.74 1.56 -90.62 -0.14 -0.88 16 8 H 0.08 0.97 6.24 -51.93 -0.32 0.64 16 9 C -0.14 -1.49 5.18 -27.89 -0.14 -1.64 16 10 C 0.51 7.65 7.55 -10.98 -0.08 7.56 16 11 O -0.55 -9.68 13.96 5.56 0.08 -9.61 16 12 N -0.71 -11.59 5.53 -61.47 -0.34 -11.93 16 13 C 0.11 2.00 6.15 -5.19 -0.03 1.97 16 14 C 0.43 9.81 7.85 -10.98 -0.09 9.73 16 15 O -0.60 -15.28 15.24 5.55 0.08 -15.19 16 16 N -0.55 -13.66 5.29 -10.96 -0.06 -13.72 16 17 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 18 H 0.11 2.99 7.16 -52.49 -0.38 2.62 16 19 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 20 N -0.89 -23.93 13.05 55.50 0.72 -23.20 16 21 Si 0.93 20.52 29.55 -169.99 -5.02 15.49 16 22 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 23 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 24 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 25 C -0.11 -0.93 4.73 -26.73 -0.13 -1.06 16 26 H 0.06 0.61 4.81 -51.92 -0.25 0.36 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.48 8.14 -51.92 -0.42 0.05 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.65 6.43 -51.92 -0.33 0.32 16 33 H 0.08 1.16 5.95 -51.92 -0.31 0.85 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.41 6.57 7.44 -40.82 -0.30 6.27 16 38 H 0.08 1.46 8.14 -51.92 -0.42 1.04 16 39 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 40 H 0.40 9.46 7.90 -40.82 -0.32 9.14 16 41 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 339.96 15.07 5.12 5.12 Total: -1.00 -30.12 339.96 -7.52 -37.64 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: -6.85 Total: 13.37 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: -1.26 Total: 2.02 kcal Atomic # 7 Polarization: -49.17 SS G_CDS: 0.33 Total: -48.85 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: 0.16 Total: -24.80 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.12 -7.52 -37.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343522933.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.721 kcal (2) G-P(sol) polarization free energy of solvation -30.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds