Wall clock time and date at job start Tue Mar 31 2020 02:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09004 * 109.47037 * 2 1 4 4 C 1.53001 * 109.47150 * 119.99333 * 2 1 3 5 5 C 1.52997 * 109.47312 * 60.00333 * 4 2 1 6 6 C 1.52997 * 109.46785 * 59.99836 * 5 4 2 7 7 C 1.53002 * 109.47659 * 299.99968 * 6 5 4 8 8 H 1.08999 * 109.46820 * 300.00859 * 7 6 5 9 9 C 1.52992 * 109.47183 * 180.02562 * 7 6 5 10 10 C 1.50703 * 109.47261 * 65.00478 * 9 7 6 11 11 O 1.21283 * 120.00011 * 359.97438 * 10 9 7 12 12 N 1.34775 * 120.00072 * 179.97438 * 10 9 7 13 13 C 1.46499 * 120.00181 * 179.97438 * 12 10 9 14 14 C 1.50700 * 109.47257 * 179.97438 * 13 12 10 15 15 O 1.21293 * 119.99810 * 359.97438 * 14 13 12 16 16 N 1.34777 * 119.99675 * 180.27849 * 14 13 12 17 17 C 1.37102 * 119.99634 * 179.72687 * 16 14 13 18 18 H 1.08002 * 119.99868 * 359.97438 * 17 16 14 19 19 C 1.38945 * 119.99860 * 179.97438 * 17 16 14 20 20 N 1.31414 * 119.99894 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99956 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47230 * 0.02562 * 21 19 17 23 23 H 1.48493 * 109.46892 * 120.00602 * 21 19 17 24 24 H 1.48503 * 109.46797 * 240.00208 * 21 19 17 25 25 C 1.52997 * 109.47719 * 239.99552 * 2 1 3 26 26 H 1.09010 * 109.47275 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47728 * 300.00584 * 1 2 3 28 28 H 1.09001 * 109.47399 * 60.01167 * 1 2 3 29 29 H 1.09007 * 109.47218 * 180.02562 * 4 2 1 30 30 H 1.09005 * 109.47241 * 300.00115 * 4 2 1 31 31 H 1.08997 * 109.47591 * 180.02562 * 5 4 2 32 32 H 1.09007 * 109.46998 * 300.00159 * 5 4 2 33 33 H 1.09011 * 109.46778 * 180.02562 * 6 5 4 34 34 H 1.09001 * 109.47400 * 60.00999 * 6 5 4 35 35 H 1.09000 * 109.47686 * 305.00089 * 9 7 6 36 36 H 1.09006 * 109.46660 * 185.00129 * 9 7 6 37 37 H 0.97002 * 120.00040 * 359.97438 * 12 10 9 38 38 H 1.09009 * 109.46700 * 59.99666 * 13 12 10 39 39 H 1.08998 * 109.46827 * 300.00240 * 13 12 10 40 40 H 0.97001 * 120.00485 * 359.71840 * 16 14 13 41 41 H 0.97004 * 119.99542 * 179.97438 * 20 19 17 42 42 H 1.08993 * 109.47366 * 179.97438 * 25 2 1 43 43 H 1.09000 * 109.46810 * 59.99464 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7211 1.2493 5 6 1.5300 -2.1636 1.2495 6 6 2.0401 -2.8849 0.0003 7 6 1.5301 -2.1639 -1.2491 8 1 0.4401 -2.1639 -1.2490 9 6 2.0397 -2.8856 -2.4981 10 6 1.4383 -4.2660 -2.5612 11 8 0.6774 -4.6362 -1.6923 12 7 1.7460 -5.0890 -3.5831 13 6 1.1619 -6.4311 -3.6441 14 6 1.6628 -7.1415 -4.8752 15 8 2.4317 -6.5815 -5.6279 16 7 1.2515 -8.3967 -5.1431 17 6 1.7029 -9.0409 -6.2660 18 1 2.3876 -8.5424 -6.9361 19 6 1.2794 -10.3352 -6.5419 20 7 0.4458 -10.9416 -5.7268 21 14 1.8937 -11.2127 -8.0723 22 1 2.8156 -10.3193 -8.8187 23 1 2.6149 -12.4493 -7.6778 24 1 0.7393 -11.5672 -8.9366 25 6 2.0400 -0.7213 -1.2491 26 1 -0.3634 -1.0278 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5136 -0.8901 29 1 3.1300 -0.7207 1.2496 30 1 1.6766 -0.2072 2.1393 31 1 1.8929 -2.6772 2.1397 32 1 0.4400 -2.1637 1.2495 33 1 1.6764 -3.9125 0.0002 34 1 3.1301 -2.8850 0.0004 35 1 3.1260 -2.9641 -2.4547 36 1 1.7513 -2.3227 -3.3859 37 1 2.3543 -4.7928 -4.2782 38 1 0.0755 -6.3529 -3.6869 39 1 1.4510 -6.9939 -2.7565 40 1 0.6364 -8.8444 -4.5414 41 1 0.1499 -11.8450 -5.9197 42 1 3.1300 -0.7209 -1.2493 43 1 1.6767 -0.2076 -2.1391 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343522933.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:45 Heat of formation + Delta-G solvation = -132.854537 kcal Electronic energy + Delta-G solvation = -22032.042039 eV Core-core repulsion = 18688.613825 eV Total energy + Delta-G solvation = -3343.428215 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.24372 -40.24887 -39.35493 -36.25641 -35.25627 -34.04425 -33.38303 -32.33441 -29.91376 -27.83268 -27.52084 -26.15332 -23.13677 -22.58910 -21.38053 -21.10333 -20.06269 -19.50423 -18.35478 -17.27192 -17.05398 -16.84454 -16.35510 -16.26288 -15.88653 -15.69896 -15.25105 -15.21576 -14.73987 -14.40171 -14.03655 -13.82454 -13.58396 -13.54564 -13.45553 -12.95748 -12.91336 -12.61534 -12.46147 -12.36680 -12.26715 -12.11775 -11.82011 -11.68224 -11.59188 -11.23289 -11.00021 -10.82045 -10.58256 -10.51134 -10.15225 -10.06335 -8.52540 -6.02891 1.34208 1.42173 1.56371 1.67516 1.89945 2.09326 2.33237 3.12874 3.14669 3.74044 3.77865 3.84769 4.01900 4.21936 4.23848 4.34539 4.40519 4.42418 4.47437 4.55807 4.61427 4.68158 4.72602 4.81245 4.90618 4.91037 5.06586 5.10939 5.17566 5.21734 5.29482 5.36957 5.37294 5.44955 5.46775 5.52977 5.64844 5.72252 5.90839 6.45359 6.59496 7.02173 7.25324 7.43397 7.92854 8.64698 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.051017 B = 0.002601 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.706972 B =10762.372431 C =10981.842847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.090 4.090 3 H 0.081 0.919 4 C -0.111 4.111 5 C -0.118 4.118 6 C -0.119 4.119 7 C -0.068 4.068 8 H 0.064 0.936 9 C -0.131 4.131 10 C 0.509 3.491 11 O -0.576 6.576 12 N -0.712 5.712 13 C 0.121 3.879 14 C 0.433 3.567 15 O -0.624 6.624 16 N -0.561 5.561 17 C -0.336 4.336 18 H 0.086 0.914 19 C -0.012 4.012 20 N -0.917 5.917 21 Si 0.998 3.002 22 H -0.269 1.269 23 H -0.271 1.271 24 H -0.271 1.271 25 C -0.106 4.106 26 H 0.048 0.952 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.051 0.949 34 H 0.060 0.940 35 H 0.111 0.889 36 H 0.114 0.886 37 H 0.413 0.587 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.398 0.602 41 H 0.280 0.720 42 H 0.072 0.928 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.172 19.579 11.250 22.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.108 4.108 3 H 0.099 0.901 4 C -0.148 4.148 5 C -0.156 4.156 6 C -0.157 4.157 7 C -0.087 4.087 8 H 0.082 0.918 9 C -0.170 4.170 10 C 0.297 3.703 11 O -0.456 6.456 12 N -0.367 5.367 13 C -0.007 4.007 14 C 0.220 3.780 15 O -0.512 6.512 16 N -0.196 5.196 17 C -0.466 4.466 18 H 0.104 0.896 19 C -0.212 4.212 20 N -0.557 5.557 21 Si 0.821 3.179 22 H -0.194 1.194 23 H -0.196 1.196 24 H -0.196 1.196 25 C -0.143 4.143 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.130 0.870 36 H 0.132 0.868 37 H 0.251 0.749 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.232 0.768 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.047 19.469 11.354 22.630 hybrid contribution -0.061 -1.130 -0.689 1.325 sum 1.987 18.338 10.665 21.307 Atomic orbital electron populations 1.21947 0.95748 1.01559 1.01700 1.21091 0.95652 0.99398 0.94667 0.90110 1.21561 1.00670 0.94806 0.97804 1.21518 1.00542 0.96243 0.97267 1.21661 1.00085 0.99362 0.94583 1.20901 1.00360 0.94820 0.92574 0.91801 1.21824 1.02934 0.90525 1.01756 1.21418 0.80834 0.88061 0.79951 1.90643 1.37875 1.77613 1.39465 1.45852 1.49230 1.13942 1.27629 1.20730 0.99143 0.84749 0.96070 1.20461 0.85407 0.83145 0.88994 1.90468 1.40844 1.67230 1.52633 1.41876 1.41787 1.12647 1.23321 1.19776 1.27171 0.97662 1.01948 0.89563 1.26149 0.96182 0.96901 1.02001 1.69691 1.32648 1.14917 1.38479 0.84801 0.78236 0.77831 0.77054 1.19373 1.19618 1.19608 1.21610 1.01101 0.93421 0.98192 0.93262 0.92512 0.92553 0.91597 0.91633 0.92418 0.92661 0.93018 0.92095 0.87040 0.86828 0.74877 0.89166 0.89174 0.76760 0.91064 0.90916 0.91007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 8.50 71.98 0.61 -1.66 16 2 C -0.09 -1.22 3.19 -10.80 -0.03 -1.26 16 3 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 4 C -0.11 -1.60 5.45 30.59 0.17 -1.43 16 5 C -0.12 -2.20 5.65 30.59 0.17 -2.03 16 6 C -0.12 -2.58 4.94 30.59 0.15 -2.43 16 7 C -0.07 -1.32 1.56 -10.79 -0.02 -1.34 16 8 H 0.06 1.49 6.24 -2.39 -0.01 1.48 16 9 C -0.13 -2.60 5.18 29.85 0.15 -2.44 16 10 C 0.51 14.87 7.55 87.66 0.66 15.54 16 11 O -0.58 -20.44 13.96 -3.04 -0.04 -20.48 16 12 N -0.71 -22.76 5.53 -466.78 -2.58 -25.34 16 13 C 0.12 4.44 6.15 85.63 0.53 4.96 16 14 C 0.43 20.02 7.85 87.66 0.69 20.71 16 15 O -0.62 -32.15 15.24 -3.07 -0.05 -32.20 16 16 N -0.56 -28.32 5.29 -306.98 -1.62 -29.95 16 17 C -0.34 -18.58 9.68 84.04 0.81 -17.76 16 18 H 0.09 5.02 7.16 -2.91 -0.02 4.99 16 19 C -0.01 -0.62 5.50 84.92 0.47 -0.15 16 20 N -0.92 -48.93 13.05 21.66 0.28 -48.65 16 21 Si 1.00 41.77 29.55 68.60 2.03 43.79 16 22 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 23 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 24 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 25 C -0.11 -1.50 4.73 30.59 0.14 -1.36 16 26 H 0.05 0.90 4.81 -2.38 -0.01 0.88 16 27 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 30 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 31 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.05 1.12 6.43 -2.38 -0.02 1.11 16 33 H 0.05 1.45 5.95 -2.38 -0.01 1.44 16 34 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.11 1.82 8.14 -2.38 -0.02 1.80 16 37 H 0.41 12.88 7.44 -92.71 -0.69 12.19 16 38 H 0.09 3.19 8.14 -2.38 -0.02 3.17 16 39 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 40 H 0.40 19.39 7.90 -92.71 -0.73 18.65 16 41 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 42 H 0.07 0.91 8.14 -2.39 -0.02 0.90 16 43 H 0.07 0.90 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -64.64 339.96 2.13 -62.52 By element: Atomic # 1 Polarization: 41.36 SS G_CDS: -0.40 Total: 40.96 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: 4.51 Total: 9.35 kcal Atomic # 7 Polarization: -100.01 SS G_CDS: -3.92 Total: -103.93 kcal Atomic # 8 Polarization: -52.60 SS G_CDS: -0.09 Total: -52.68 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.79 kcal Total: -64.64 2.13 -62.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343522933.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.339 kcal (2) G-P(sol) polarization free energy of solvation -64.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds