Wall clock time and date at job start Tue Mar 31 2020 02:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47254 * 2 1 4 4 C 1.53003 * 109.46833 * 119.99713 * 2 1 3 5 5 C 1.53002 * 109.46833 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.47227 * 299.99728 * 5 4 2 7 7 C 1.53003 * 109.46992 * 60.00369 * 6 5 4 8 8 H 1.09000 * 109.46966 * 59.99762 * 7 6 5 9 9 C 1.52997 * 109.46992 * 180.02562 * 7 6 5 10 10 C 1.50703 * 109.47084 * 294.99678 * 9 7 6 11 11 O 1.21278 * 119.99985 * 0.02562 * 10 9 7 12 12 N 1.34779 * 119.99944 * 180.02562 * 10 9 7 13 13 C 1.46499 * 119.99872 * 180.02562 * 12 10 9 14 14 C 1.50701 * 109.46992 * 179.97438 * 13 12 10 15 15 O 1.21294 * 119.99849 * 0.02562 * 14 13 12 16 16 N 1.34780 * 119.99795 * 179.97438 * 14 13 12 17 17 C 1.37101 * 119.99707 * 180.02562 * 16 14 13 18 18 H 1.08002 * 119.99704 * 359.97438 * 17 16 14 19 19 C 1.38941 * 119.99927 * 180.02562 * 17 16 14 20 20 N 1.31417 * 120.00180 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00273 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47268 * 89.99721 * 21 19 17 23 23 H 1.48498 * 109.47211 * 209.99980 * 21 19 17 24 24 H 1.48505 * 109.46734 * 329.99774 * 21 19 17 25 25 C 1.52997 * 109.47227 * 239.99441 * 2 1 3 26 26 H 1.08996 * 109.46934 * 300.00405 * 1 2 3 27 27 H 1.09001 * 109.46896 * 60.00668 * 1 2 3 28 28 H 1.09002 * 109.46986 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47618 * 60.00108 * 4 2 1 30 30 H 1.08996 * 109.47264 * 299.99679 * 4 2 1 31 31 H 1.09001 * 109.46896 * 179.97438 * 5 4 2 32 32 H 1.09000 * 109.47254 * 60.00287 * 5 4 2 33 33 H 1.08993 * 109.47132 * 299.99836 * 6 5 4 34 34 H 1.09002 * 109.46840 * 180.02562 * 6 5 4 35 35 H 1.09002 * 109.47045 * 174.99711 * 9 7 6 36 36 H 1.09001 * 109.47375 * 54.99636 * 9 7 6 37 37 H 0.97000 * 119.99708 * 359.97438 * 12 10 9 38 38 H 1.09002 * 109.47391 * 59.99686 * 13 12 10 39 39 H 1.09001 * 109.46813 * 299.99742 * 13 12 10 40 40 H 0.96995 * 120.00011 * 0.02562 * 16 14 13 41 41 H 0.97000 * 119.99884 * 180.02562 * 20 19 17 42 42 H 1.09001 * 109.47272 * 60.00120 * 25 2 1 43 43 H 1.09002 * 109.47223 * 299.99960 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7218 1.2490 6 6 4.0795 -1.4435 -0.0001 7 6 3.5695 -0.7223 -1.2495 8 1 3.9333 0.3052 -1.2497 9 6 4.0785 -1.4444 -2.4986 10 6 5.5805 -1.3391 -2.5627 11 8 6.1844 -0.7455 -1.6945 12 7 6.2526 -1.9048 -3.5849 13 6 7.7128 -1.8030 -3.6469 14 6 8.2141 -2.5141 -4.8774 15 8 7.4288 -3.0526 -5.6288 16 7 9.5349 -2.5509 -5.1433 17 6 9.9909 -3.1974 -6.2630 18 1 9.2917 -3.6776 -6.9316 19 6 11.3525 -3.2358 -6.5369 20 7 12.2032 -2.6520 -5.7230 21 14 11.9738 -4.1161 -8.0629 22 1 12.0247 -3.1612 -9.1990 23 1 13.3345 -4.6522 -7.8055 24 1 11.0561 -5.2347 -8.3971 25 6 2.0400 -0.7214 -1.2491 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 1.6767 -1.7488 1.2494 30 1 1.6767 -0.2073 2.1392 31 1 3.9333 -1.2352 2.1393 32 1 3.9337 0.3057 1.2488 33 1 3.7158 -2.4710 0.0002 34 1 5.1695 -1.4443 -0.0001 35 1 3.6438 -0.9849 -3.3863 36 1 3.7894 -2.4944 -2.4544 37 1 5.7696 -2.3799 -4.2790 38 1 8.1471 -2.2631 -2.7594 39 1 8.0022 -0.7530 -3.6904 40 1 10.1627 -2.1200 -4.5426 41 1 13.1537 -2.6785 -5.9145 42 1 1.6767 -0.2076 -2.1392 43 1 1.6767 -1.7490 -1.2491 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343522934.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:47 Heat of formation + Delta-G solvation = -117.703326 kcal Electronic energy + Delta-G solvation = -21838.911926 eV Core-core repulsion = 18496.140718 eV Total energy + Delta-G solvation = -3342.771209 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.01300 -38.72566 -37.93800 -34.47065 -33.68572 -33.42618 -31.91736 -31.38569 -28.62792 -26.70988 -26.32258 -24.38670 -22.14631 -21.23573 -19.92270 -19.86465 -19.46305 -18.09717 -17.02861 -15.70515 -15.55068 -15.47002 -15.23511 -14.76112 -14.51838 -14.36725 -14.06529 -14.04339 -13.62005 -13.44356 -12.99879 -12.55530 -12.37784 -12.18633 -12.04087 -11.94344 -11.64668 -11.57946 -11.41723 -11.13234 -11.08360 -10.91003 -10.51843 -10.46847 -10.35993 -10.32111 -10.08163 -9.64671 -9.46442 -8.74859 -8.64088 -8.11162 -6.52412 -3.94555 2.87549 3.11022 3.21143 3.25875 3.42846 3.73260 4.10711 4.48635 4.53135 4.60570 4.87819 4.91928 4.92628 5.12380 5.15519 5.16118 5.31086 5.36469 5.38556 5.45796 5.53547 5.57359 5.64717 5.70160 5.71325 5.84058 5.90039 5.92554 5.96626 6.06919 6.08932 6.12065 6.15778 6.22173 6.43688 6.45555 6.73786 7.45033 7.84852 7.91261 8.43545 8.50779 9.03606 9.38363 9.86248 10.64470 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.052916 B = 0.002524 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.010202 B =11088.886827 C =11436.034583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 H 0.069 0.931 4 C -0.114 4.114 5 C -0.117 4.117 6 C -0.121 4.121 7 C -0.069 4.069 8 H 0.077 0.923 9 C -0.137 4.137 10 C 0.510 3.490 11 O -0.547 6.547 12 N -0.710 5.710 13 C 0.109 3.891 14 C 0.428 3.572 15 O -0.598 6.598 16 N -0.550 5.550 17 C -0.305 4.305 18 H 0.105 0.895 19 C 0.025 3.975 20 N -0.895 5.895 21 Si 0.933 3.067 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.269 1.269 25 C -0.110 4.110 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.410 0.590 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.396 0.604 41 H 0.274 0.726 42 H 0.061 0.939 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.289 4.295 11.300 21.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 H 0.087 0.913 4 C -0.151 4.151 5 C -0.155 4.155 6 C -0.158 4.158 7 C -0.088 4.088 8 H 0.096 0.904 9 C -0.177 4.177 10 C 0.296 3.704 11 O -0.426 6.426 12 N -0.364 5.364 13 C -0.019 4.019 14 C 0.213 3.787 15 O -0.485 6.485 16 N -0.184 5.184 17 C -0.435 4.435 18 H 0.123 0.877 19 C -0.178 4.178 20 N -0.535 5.535 21 Si 0.760 3.240 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.193 1.193 25 C -0.147 4.147 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.102 0.898 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.248 0.752 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.230 0.770 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.128 4.358 11.390 21.848 hybrid contribution 0.655 -0.397 -0.776 1.090 sum -17.472 3.961 10.614 20.824 Atomic orbital electron populations 1.21835 0.95486 1.01668 1.01458 1.21118 0.95070 0.99755 0.95102 0.91272 1.21611 0.95978 1.00399 0.97153 1.21500 0.95019 1.00982 0.97989 1.21717 1.02584 0.98157 0.93350 1.20881 0.94307 1.00337 0.93279 0.90410 1.21735 0.92164 1.03250 1.00532 1.20651 0.90094 0.78459 0.81173 1.90645 1.70414 1.42887 1.38620 1.45791 1.07317 1.56307 1.26971 1.20933 0.81194 1.01404 0.98387 1.19777 0.83775 0.86727 0.88375 1.90493 1.55152 1.51458 1.51364 1.41808 1.05137 1.47805 1.23681 1.19728 0.91761 1.30762 1.01199 0.87685 1.25332 0.95719 0.97485 0.99229 1.69618 1.03437 1.43220 1.37217 0.85807 0.78020 0.79479 0.80689 1.20255 1.20790 1.19316 1.21657 0.94910 1.00706 0.97446 0.92908 0.92781 0.92792 0.92186 0.92452 0.92324 0.92045 0.92785 0.89771 0.88945 0.88972 0.75201 0.89971 0.89959 0.77036 0.91581 0.92002 0.91925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.19 37.16 0.34 -0.67 16 2 C -0.09 -0.74 2.72 -90.62 -0.25 -0.99 16 3 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 4 C -0.11 -0.94 5.20 -26.73 -0.14 -1.08 16 5 C -0.12 -1.14 5.92 -26.73 -0.16 -1.30 16 6 C -0.12 -1.34 4.94 -26.73 -0.13 -1.48 16 7 C -0.07 -0.73 1.84 -90.65 -0.17 -0.89 16 8 H 0.08 0.93 7.96 -51.93 -0.41 0.52 16 9 C -0.14 -1.49 5.17 -27.88 -0.14 -1.63 16 10 C 0.51 7.66 7.55 -10.98 -0.08 7.58 16 11 O -0.55 -9.73 13.97 5.56 0.08 -9.65 16 12 N -0.71 -11.60 5.53 -61.47 -0.34 -11.94 16 13 C 0.11 2.00 6.15 -5.19 -0.03 1.97 16 14 C 0.43 9.82 7.85 -10.98 -0.09 9.73 16 15 O -0.60 -15.29 15.24 5.55 0.08 -15.20 16 16 N -0.55 -13.67 5.29 -10.96 -0.06 -13.72 16 17 C -0.31 -8.30 9.68 -14.94 -0.14 -8.45 16 18 H 0.11 2.97 7.16 -52.49 -0.38 2.60 16 19 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 20 N -0.89 -23.92 13.05 55.50 0.72 -23.20 16 21 Si 0.93 20.53 29.55 -169.99 -5.02 15.51 16 22 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 23 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 24 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 25 C -0.11 -0.93 4.48 -26.76 -0.12 -1.05 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.08 1.17 5.95 -51.93 -0.31 0.86 16 35 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.41 6.57 7.44 -40.82 -0.30 6.27 16 38 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 39 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 40 H 0.40 9.47 7.90 -40.82 -0.32 9.15 16 41 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 346.99 15.07 5.23 5.23 Total: -1.00 -30.14 346.99 -7.71 -37.85 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: -7.20 Total: 12.80 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: -1.21 Total: 2.33 kcal Atomic # 7 Polarization: -49.19 SS G_CDS: 0.33 Total: -48.87 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: 0.16 Total: -24.85 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.14 -7.71 -37.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343522934.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.849 kcal (2) G-P(sol) polarization free energy of solvation -30.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds