Wall clock time and date at job start Tue Mar 31 2020 02:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47254 * 2 1 4 4 C 1.53003 * 109.46833 * 119.99713 * 2 1 3 5 5 C 1.53002 * 109.46833 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.47227 * 299.99728 * 5 4 2 7 7 C 1.53003 * 109.46992 * 60.00369 * 6 5 4 8 8 H 1.09000 * 109.46966 * 59.99762 * 7 6 5 9 9 C 1.52997 * 109.46992 * 180.02562 * 7 6 5 10 10 C 1.50703 * 109.47084 * 294.99678 * 9 7 6 11 11 O 1.21278 * 119.99985 * 0.02562 * 10 9 7 12 12 N 1.34779 * 119.99944 * 180.02562 * 10 9 7 13 13 C 1.46499 * 119.99872 * 180.02562 * 12 10 9 14 14 C 1.50701 * 109.46992 * 179.97438 * 13 12 10 15 15 O 1.21294 * 119.99849 * 0.02562 * 14 13 12 16 16 N 1.34780 * 119.99795 * 179.97438 * 14 13 12 17 17 C 1.37101 * 119.99707 * 180.02562 * 16 14 13 18 18 H 1.08002 * 119.99704 * 359.97438 * 17 16 14 19 19 C 1.38941 * 119.99927 * 180.02562 * 17 16 14 20 20 N 1.31417 * 120.00180 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00273 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47268 * 89.99721 * 21 19 17 23 23 H 1.48498 * 109.47211 * 209.99980 * 21 19 17 24 24 H 1.48505 * 109.46734 * 329.99774 * 21 19 17 25 25 C 1.52997 * 109.47227 * 239.99441 * 2 1 3 26 26 H 1.08996 * 109.46934 * 300.00405 * 1 2 3 27 27 H 1.09001 * 109.46896 * 60.00668 * 1 2 3 28 28 H 1.09002 * 109.46986 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47618 * 60.00108 * 4 2 1 30 30 H 1.08996 * 109.47264 * 299.99679 * 4 2 1 31 31 H 1.09001 * 109.46896 * 179.97438 * 5 4 2 32 32 H 1.09000 * 109.47254 * 60.00287 * 5 4 2 33 33 H 1.08993 * 109.47132 * 299.99836 * 6 5 4 34 34 H 1.09002 * 109.46840 * 180.02562 * 6 5 4 35 35 H 1.09002 * 109.47045 * 174.99711 * 9 7 6 36 36 H 1.09001 * 109.47375 * 54.99636 * 9 7 6 37 37 H 0.97000 * 119.99708 * 359.97438 * 12 10 9 38 38 H 1.09002 * 109.47391 * 59.99686 * 13 12 10 39 39 H 1.09001 * 109.46813 * 299.99742 * 13 12 10 40 40 H 0.96995 * 120.00011 * 0.02562 * 16 14 13 41 41 H 0.97000 * 119.99884 * 180.02562 * 20 19 17 42 42 H 1.09001 * 109.47272 * 60.00120 * 25 2 1 43 43 H 1.09002 * 109.47223 * 299.99960 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7218 1.2490 6 6 4.0795 -1.4435 -0.0001 7 6 3.5695 -0.7223 -1.2495 8 1 3.9333 0.3052 -1.2497 9 6 4.0785 -1.4444 -2.4986 10 6 5.5805 -1.3391 -2.5627 11 8 6.1844 -0.7455 -1.6945 12 7 6.2526 -1.9048 -3.5849 13 6 7.7128 -1.8030 -3.6469 14 6 8.2141 -2.5141 -4.8774 15 8 7.4288 -3.0526 -5.6288 16 7 9.5349 -2.5509 -5.1433 17 6 9.9909 -3.1974 -6.2630 18 1 9.2917 -3.6776 -6.9316 19 6 11.3525 -3.2358 -6.5369 20 7 12.2032 -2.6520 -5.7230 21 14 11.9738 -4.1161 -8.0629 22 1 12.0247 -3.1612 -9.1990 23 1 13.3345 -4.6522 -7.8055 24 1 11.0561 -5.2347 -8.3971 25 6 2.0400 -0.7214 -1.2491 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 1.6767 -1.7488 1.2494 30 1 1.6767 -0.2073 2.1392 31 1 3.9333 -1.2352 2.1393 32 1 3.9337 0.3057 1.2488 33 1 3.7158 -2.4710 0.0002 34 1 5.1695 -1.4443 -0.0001 35 1 3.6438 -0.9849 -3.3863 36 1 3.7894 -2.4944 -2.4544 37 1 5.7696 -2.3799 -4.2790 38 1 8.1471 -2.2631 -2.7594 39 1 8.0022 -0.7530 -3.6904 40 1 10.1627 -2.1200 -4.5426 41 1 13.1537 -2.6785 -5.9145 42 1 1.6767 -0.2076 -2.1392 43 1 1.6767 -1.7490 -1.2491 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343522934.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:47 Heat of formation + Delta-G solvation = -136.982336 kcal Electronic energy + Delta-G solvation = -21839.747927 eV Core-core repulsion = 18496.140718 eV Total energy + Delta-G solvation = -3343.607209 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.19993 -40.17442 -39.19946 -36.25725 -35.26544 -34.26573 -33.38773 -32.66843 -29.93712 -27.86982 -27.11285 -26.15663 -22.92405 -22.19471 -21.38124 -20.90835 -20.61164 -20.04939 -18.40622 -17.25534 -16.97964 -16.83835 -16.35024 -16.06343 -15.87176 -15.68586 -15.36584 -15.01267 -14.74063 -14.52898 -14.07967 -13.80701 -13.65158 -13.55734 -13.19533 -13.02951 -12.90923 -12.66463 -12.47617 -12.45270 -12.13633 -12.12739 -11.82738 -11.64319 -11.58150 -11.29534 -11.23089 -10.81873 -10.60180 -10.54809 -10.15600 -10.06724 -8.52228 -6.02723 1.35644 1.42138 1.54924 1.67083 1.90113 2.09019 2.33158 3.12843 3.14835 3.73022 3.74645 3.82782 4.03257 4.19425 4.21566 4.36195 4.37860 4.42096 4.45772 4.55928 4.61104 4.66353 4.79339 4.82150 4.87194 4.93834 5.00565 5.07601 5.15351 5.24684 5.29210 5.34384 5.37096 5.45100 5.46823 5.51691 5.60640 5.69191 5.90749 6.45426 6.59188 7.02116 7.24956 7.43388 7.92886 8.64695 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.052916 B = 0.002524 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.010202 B =11088.886827 C =11436.034583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 H 0.061 0.939 4 C -0.110 4.110 5 C -0.117 4.117 6 C -0.120 4.120 7 C -0.066 4.066 8 H 0.058 0.942 9 C -0.130 4.130 10 C 0.509 3.491 11 O -0.576 6.576 12 N -0.712 5.712 13 C 0.121 3.879 14 C 0.432 3.568 15 O -0.624 6.624 16 N -0.561 5.561 17 C -0.337 4.337 18 H 0.087 0.913 19 C -0.012 4.012 20 N -0.917 5.917 21 Si 0.998 3.002 22 H -0.270 1.270 23 H -0.272 1.272 24 H -0.269 1.269 25 C -0.104 4.104 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.050 0.950 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.114 0.886 36 H 0.112 0.888 37 H 0.413 0.587 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.398 0.602 41 H 0.280 0.720 42 H 0.071 0.929 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.729 4.047 11.219 23.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 H 0.080 0.920 4 C -0.147 4.147 5 C -0.155 4.155 6 C -0.157 4.157 7 C -0.085 4.085 8 H 0.077 0.923 9 C -0.169 4.169 10 C 0.297 3.703 11 O -0.456 6.456 12 N -0.366 5.366 13 C -0.007 4.007 14 C 0.220 3.780 15 O -0.512 6.512 16 N -0.196 5.196 17 C -0.467 4.467 18 H 0.105 0.895 19 C -0.213 4.213 20 N -0.557 5.557 21 Si 0.821 3.179 22 H -0.195 1.195 23 H -0.197 1.197 24 H -0.194 1.194 25 C -0.141 4.141 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.132 0.868 36 H 0.130 0.870 37 H 0.251 0.749 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.232 0.768 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -19.582 4.122 11.327 22.995 hybrid contribution 1.083 -0.290 -0.688 1.316 sum -18.499 3.832 10.639 21.681 Atomic orbital electron populations 1.21799 0.94255 1.02115 1.01931 1.21123 0.96044 0.99218 0.94752 0.92030 1.21582 0.94474 1.00914 0.97742 1.21487 0.96392 1.00147 0.97425 1.21668 1.00598 0.98970 0.94509 1.20850 0.95927 0.98993 0.92735 0.92323 1.21812 0.88645 1.04830 1.01651 1.21414 0.91714 0.77190 0.79947 1.90643 1.71427 1.44037 1.39523 1.45849 1.06258 1.56871 1.27659 1.20730 0.82770 1.01117 0.96075 1.20462 0.82973 0.85616 0.88986 1.90468 1.55687 1.52367 1.52662 1.41871 1.05933 1.48274 1.23537 1.19741 0.92248 1.32384 1.02277 0.89541 1.26154 0.95374 0.97763 1.01964 1.69685 1.03859 1.43672 1.38467 0.84853 0.77598 0.78304 0.77144 1.19514 1.19653 1.19394 1.21621 0.92879 1.01518 0.98127 0.92464 0.92369 0.92325 0.91622 0.91641 0.92150 0.93091 0.91978 0.92934 0.86759 0.86960 0.74859 0.89176 0.89151 0.76757 0.91061 0.91004 0.90959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.19 71.98 0.66 -0.94 16 2 C -0.09 -1.31 2.72 -10.79 -0.03 -1.34 16 3 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 4 C -0.11 -1.61 5.20 30.60 0.16 -1.45 16 5 C -0.12 -2.20 5.92 30.59 0.18 -2.02 16 6 C -0.12 -2.60 4.94 30.59 0.15 -2.45 16 7 C -0.07 -1.30 1.84 -10.81 -0.02 -1.32 16 8 H 0.06 1.39 7.96 -2.39 -0.02 1.37 16 9 C -0.13 -2.58 5.17 29.85 0.15 -2.42 16 10 C 0.51 14.89 7.55 87.66 0.66 15.55 16 11 O -0.58 -20.51 13.97 -3.02 -0.04 -20.55 16 12 N -0.71 -22.75 5.53 -466.78 -2.58 -25.33 16 13 C 0.12 4.44 6.15 85.63 0.53 4.96 16 14 C 0.43 20.00 7.85 87.66 0.69 20.69 16 15 O -0.62 -32.14 15.24 -3.07 -0.05 -32.18 16 16 N -0.56 -28.32 5.29 -306.98 -1.62 -29.95 16 17 C -0.34 -18.62 9.68 84.04 0.81 -17.81 16 18 H 0.09 5.01 7.16 -2.91 -0.02 4.99 16 19 C -0.01 -0.63 5.50 84.92 0.47 -0.16 16 20 N -0.92 -48.90 13.05 21.66 0.28 -48.61 16 21 Si 1.00 41.75 29.55 68.60 2.03 43.78 16 22 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 23 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 24 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 25 C -0.10 -1.51 4.48 30.58 0.14 -1.37 16 26 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.06 0.86 8.14 -2.39 -0.02 0.85 16 31 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.05 1.48 5.95 -2.39 -0.01 1.47 16 35 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.41 12.87 7.44 -92.71 -0.69 12.18 16 38 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 39 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 40 H 0.40 19.39 7.90 -92.71 -0.73 18.66 16 41 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 42 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -64.61 346.99 2.15 -62.45 By element: Atomic # 1 Polarization: 40.89 SS G_CDS: -0.42 Total: 40.48 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: 4.55 Total: 9.92 kcal Atomic # 7 Polarization: -99.97 SS G_CDS: -3.92 Total: -103.89 kcal Atomic # 8 Polarization: -52.65 SS G_CDS: -0.09 Total: -52.74 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Total: -64.61 2.15 -62.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343522934.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.530 kcal (2) G-P(sol) polarization free energy of solvation -64.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds