Wall clock time and date at job start Tue Mar 31 2020 02:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46847 * 2 1 4 4 H 1.08992 * 109.47514 * 54.99831 * 3 2 1 5 5 C 1.53000 * 109.46886 * 294.99397 * 3 2 1 6 6 C 1.52997 * 109.47060 * 180.02562 * 5 3 2 7 7 C 1.52999 * 109.47317 * 59.99960 * 6 5 3 8 8 C 1.53005 * 109.47159 * 300.00546 * 7 6 5 9 9 C 1.52997 * 109.47452 * 59.99536 * 8 7 6 10 10 H 1.08993 * 109.47194 * 179.97438 * 9 8 7 11 11 C 1.50706 * 109.46907 * 59.99687 * 9 8 7 12 12 O 1.21279 * 120.00068 * 239.99984 * 11 9 8 13 13 N 1.34777 * 119.99769 * 60.00708 * 11 9 8 14 14 C 1.46496 * 120.00266 * 179.97438 * 13 11 9 15 15 C 1.50699 * 109.47317 * 179.97438 * 14 13 11 16 16 O 1.21290 * 120.00342 * 0.02562 * 15 14 13 17 17 N 1.34779 * 120.00033 * 179.97438 * 15 14 13 18 18 C 1.37088 * 120.00085 * 180.02562 * 17 15 14 19 19 H 1.07997 * 120.00319 * 359.97438 * 18 17 15 20 20 C 1.38959 * 120.00163 * 180.02562 * 18 17 15 21 21 N 1.31409 * 119.99542 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99943 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46883 * 90.00518 * 22 20 18 24 24 H 1.48507 * 109.47018 * 209.99845 * 22 20 18 25 25 H 1.48496 * 109.47426 * 330.00031 * 22 20 18 26 26 H 1.08994 * 109.47037 * 300.00493 * 1 2 3 27 27 H 1.09003 * 109.46480 * 60.00398 * 1 2 3 28 28 H 1.09004 * 109.46932 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47037 * 239.99507 * 2 1 3 30 30 H 1.09003 * 109.46480 * 119.99602 * 2 1 3 31 31 H 1.09002 * 109.47398 * 300.00496 * 5 3 2 32 32 H 1.09001 * 109.47194 * 60.00677 * 5 3 2 33 33 H 1.08996 * 109.47853 * 180.02562 * 6 5 3 34 34 H 1.09002 * 109.47153 * 300.00319 * 6 5 3 35 35 H 1.09000 * 109.47486 * 180.02562 * 7 6 5 36 36 H 1.09002 * 109.46716 * 60.00091 * 7 6 5 37 37 H 1.09002 * 109.46935 * 299.99411 * 8 7 6 38 38 H 1.09001 * 109.46812 * 179.97438 * 8 7 6 39 39 H 0.97008 * 120.00332 * 359.97438 * 13 11 9 40 40 H 1.09000 * 109.46684 * 299.99693 * 14 13 11 41 41 H 1.08996 * 109.47366 * 59.99254 * 14 13 11 42 42 H 0.97004 * 119.99471 * 359.97438 * 17 15 14 43 43 H 0.97002 * 119.99687 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 1.6353 2.1265 -1.3074 6 6 2.1458 3.5688 -1.3077 7 6 3.6706 3.5702 -1.1822 8 6 4.0753 2.8861 0.1252 9 6 3.5649 1.4438 0.1255 10 1 3.8536 0.9564 1.0567 11 6 4.1653 0.6982 -1.0384 12 8 3.4446 0.2135 -1.8849 13 7 5.5032 0.5700 -1.1386 14 6 6.0870 -0.1552 -2.2696 15 6 7.5889 -0.1533 -2.1464 16 8 8.1196 0.3991 -1.2059 17 7 8.3426 -0.7663 -3.0806 18 6 9.7088 -0.7650 -2.9682 19 1 10.1814 -0.2725 -2.1313 20 6 10.4859 -1.3966 -3.9317 21 7 9.9110 -1.9946 -4.9508 22 14 12.3476 -1.3942 -3.7788 23 1 12.7822 -2.5848 -3.0050 24 1 12.9555 -1.4352 -5.1331 25 1 12.7851 -0.1609 -3.0770 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 2.0700 1.5874 -2.1492 32 1 0.5490 2.1252 -1.3970 33 1 1.8571 4.0563 -2.2389 34 1 1.7115 4.1081 -0.4659 35 1 4.0343 4.5977 -1.1819 36 1 4.1049 3.0309 -2.0240 37 1 3.6410 3.4254 0.9670 38 1 5.1617 2.8868 0.2144 39 1 6.0797 0.9580 -0.4617 40 1 5.7234 -1.1828 -2.2690 41 1 5.7986 0.3316 -3.2012 42 1 7.9181 -1.2090 -3.8321 43 1 10.4534 -2.4358 -5.6232 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344150770.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:11 Heat of formation + Delta-G solvation = -107.321811 kcal Electronic energy + Delta-G solvation = -22843.812591 eV Core-core repulsion = 19501.491559 eV Total energy + Delta-G solvation = -3342.321033 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.66975 -38.46666 -37.11860 -34.63379 -34.03401 -33.42780 -31.46548 -31.17101 -29.00440 -27.61037 -24.70439 -23.82031 -23.09150 -21.03936 -20.59500 -19.70614 -19.18669 -18.05418 -16.62461 -16.02927 -15.59951 -15.45171 -15.05885 -14.72204 -14.39614 -14.20819 -14.00860 -13.69757 -13.48348 -13.28329 -13.25291 -12.61708 -12.22334 -12.20478 -12.00527 -11.83254 -11.64199 -11.49982 -11.38896 -11.13644 -11.03333 -10.77308 -10.53139 -10.46815 -10.32462 -10.02308 -9.97549 -9.64484 -9.17488 -8.70712 -8.63702 -8.11039 -6.52472 -3.94437 2.87753 3.10962 3.21131 3.25874 3.43949 3.73495 4.10753 4.53536 4.66321 4.69054 4.88113 5.04722 5.09099 5.16116 5.19681 5.23090 5.33562 5.41731 5.46047 5.52845 5.64835 5.68770 5.78495 5.87252 5.91464 5.94794 5.96635 5.99698 6.07103 6.11083 6.19945 6.21387 6.23669 6.38076 6.50684 6.57185 6.85312 7.45050 7.86362 7.91394 8.43867 8.53298 9.03741 9.38504 9.86457 10.64440 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.031871 B = 0.003358 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.317247 B = 8337.159184 C = 8670.795927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.135 4.135 3 C -0.060 4.060 4 H 0.069 0.931 5 C -0.130 4.130 6 C -0.118 4.118 7 C -0.123 4.123 8 C -0.111 4.111 9 C -0.104 4.104 10 H 0.094 0.906 11 C 0.519 3.481 12 O -0.541 6.541 13 N -0.708 5.708 14 C 0.109 3.891 15 C 0.428 3.572 16 O -0.598 6.598 17 N -0.549 5.549 18 C -0.305 4.305 19 H 0.105 0.895 20 C 0.026 3.974 21 N -0.895 5.895 22 Si 0.933 3.067 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.269 1.269 26 H 0.046 0.954 27 H 0.055 0.945 28 H 0.049 0.951 29 H 0.093 0.907 30 H 0.051 0.949 31 H 0.094 0.906 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.409 0.591 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.396 0.604 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.464 7.107 7.797 18.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.172 4.172 3 C -0.079 4.079 4 H 0.087 0.913 5 C -0.167 4.167 6 C -0.155 4.155 7 C -0.161 4.161 8 C -0.149 4.149 9 C -0.126 4.126 10 H 0.112 0.888 11 C 0.306 3.694 12 O -0.420 6.420 13 N -0.361 5.361 14 C -0.019 4.019 15 C 0.213 3.787 16 O -0.484 6.484 17 N -0.184 5.184 18 C -0.435 4.435 19 H 0.123 0.877 20 C -0.177 4.177 21 N -0.535 5.535 22 Si 0.759 3.241 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.193 1.193 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.112 0.888 30 H 0.070 0.930 31 H 0.112 0.888 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.247 0.753 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.229 0.771 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.495 7.012 7.627 18.639 hybrid contribution 1.044 -0.183 -0.113 1.066 sum -14.451 6.829 7.514 17.661 Atomic orbital electron populations 1.21779 0.96412 1.01100 1.01287 1.21844 0.95445 0.96438 1.03453 1.20900 0.92022 0.96647 0.98315 0.91292 1.21898 1.00315 0.95198 0.99282 1.21534 0.95447 0.97359 1.01184 1.21567 0.96302 1.00500 0.97704 1.21543 1.01133 0.93592 0.98645 1.21410 0.96983 0.96611 0.97549 0.88786 1.20486 0.81796 0.79858 0.87261 1.90539 1.59809 1.49172 1.42439 1.45791 1.06809 1.56157 1.27389 1.20925 0.93003 0.97796 0.90151 1.19777 0.87778 0.85444 0.85664 1.90493 1.73488 1.50133 1.34310 1.41800 1.07023 1.47131 1.22451 1.19728 0.80726 1.33446 1.09581 0.87694 1.25326 1.01036 0.96207 0.95139 1.69615 1.36918 1.35077 1.11877 0.85816 0.81700 0.78971 0.77565 1.20259 1.20792 1.19308 0.93484 0.92604 0.93215 0.88841 0.92989 0.88787 0.92387 0.92342 0.92536 0.91890 0.91784 0.90965 0.91131 0.75260 0.89985 0.90019 0.77061 0.91588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.67 37.16 0.36 -1.09 16 2 C -0.13 -1.54 5.03 -26.73 -0.13 -1.67 16 3 C -0.06 -0.65 1.93 -90.62 -0.18 -0.83 16 4 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 5 C -0.13 -1.48 4.69 -26.73 -0.13 -1.60 16 6 C -0.12 -1.21 5.92 -26.73 -0.16 -1.36 16 7 C -0.12 -1.37 5.70 -26.73 -0.15 -1.52 16 8 C -0.11 -1.16 5.36 -26.73 -0.14 -1.30 16 9 C -0.10 -1.20 2.55 -91.77 -0.23 -1.43 16 10 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 11 C 0.52 7.71 5.36 -10.98 -0.06 7.65 16 12 O -0.54 -9.15 11.36 5.56 0.06 -9.09 16 13 N -0.71 -11.47 5.42 -61.48 -0.33 -11.80 16 14 C 0.11 1.98 6.15 -5.20 -0.03 1.95 16 15 C 0.43 9.74 7.85 -10.99 -0.09 9.66 16 16 O -0.60 -15.18 15.24 5.55 0.08 -15.10 16 17 N -0.55 -13.58 5.29 -10.96 -0.06 -13.64 16 18 C -0.31 -8.28 9.68 -14.93 -0.14 -8.43 16 19 H 0.11 2.96 7.16 -52.49 -0.38 2.59 16 20 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 21 N -0.89 -23.85 13.05 55.50 0.72 -23.13 16 22 Si 0.93 20.49 29.55 -169.99 -5.02 15.47 16 23 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 24 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 25 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.54 6.56 -51.93 -0.34 0.20 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.09 1.32 5.64 -51.93 -0.29 1.02 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.09 1.33 5.51 -51.93 -0.29 1.05 16 32 H 0.06 0.61 6.57 -51.93 -0.34 0.26 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.85 7.22 -51.93 -0.37 0.48 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.76 7.56 -51.93 -0.39 0.37 16 39 H 0.41 6.63 6.85 -40.82 -0.28 6.35 16 40 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 41 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 42 H 0.40 9.42 7.90 -40.82 -0.32 9.10 16 43 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 335.46 15.07 5.06 5.06 Total: -1.00 -29.31 335.46 -7.46 -36.77 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: -6.79 Total: 14.86 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: -1.18 Total: 0.60 kcal Atomic # 7 Polarization: -48.90 SS G_CDS: 0.33 Total: -48.56 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: 0.15 Total: -24.18 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.31 -7.46 -36.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344150770.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.548 kcal (2) G-P(sol) polarization free energy of solvation -29.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds