Wall clock time and date at job start Tue Mar 31 2020 02:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47280 * 2 1 4 4 H 1.09002 * 109.47070 * 305.00376 * 3 2 1 5 5 C 1.52997 * 109.46817 * 65.00196 * 3 2 1 6 6 C 1.53002 * 109.47143 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.47092 * 300.00129 * 6 5 3 8 8 C 1.52997 * 109.47232 * 59.99925 * 7 6 5 9 9 C 1.52997 * 109.47415 * 185.00323 * 3 2 1 10 10 H 1.09002 * 109.47045 * 300.00068 * 9 3 2 11 11 C 1.50703 * 109.47084 * 60.00035 * 9 3 2 12 12 O 1.21278 * 119.99985 * 0.02562 * 11 9 3 13 13 N 1.34779 * 119.99944 * 180.02562 * 11 9 3 14 14 C 1.46499 * 119.99872 * 180.02562 * 13 11 9 15 15 C 1.50701 * 109.46992 * 179.97438 * 14 13 11 16 16 O 1.21294 * 119.99849 * 0.02562 * 15 14 13 17 17 N 1.34780 * 119.99795 * 179.97438 * 15 14 13 18 18 C 1.37101 * 119.99707 * 180.02562 * 17 15 14 19 19 H 1.08002 * 119.99704 * 359.97438 * 18 17 15 20 20 C 1.38941 * 119.99927 * 180.02562 * 18 17 15 21 21 N 1.31417 * 120.00180 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00273 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47268 * 89.99721 * 22 20 18 24 24 H 1.48498 * 109.47211 * 209.99980 * 22 20 18 25 25 H 1.48505 * 109.46734 * 329.99774 * 22 20 18 26 26 H 1.09001 * 109.47239 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46729 * 299.99742 * 1 2 3 28 28 H 1.08996 * 109.47226 * 59.99289 * 1 2 3 29 29 H 1.09008 * 109.46996 * 240.00286 * 2 1 3 30 30 H 1.08997 * 109.47507 * 120.00240 * 2 1 3 31 31 H 1.09002 * 109.47153 * 60.00231 * 5 3 2 32 32 H 1.09000 * 109.47611 * 299.99743 * 5 3 2 33 33 H 1.09000 * 109.47312 * 180.02562 * 6 5 3 34 34 H 1.09002 * 109.47067 * 59.99982 * 6 5 3 35 35 H 1.09002 * 109.47045 * 299.99867 * 7 6 5 36 36 H 1.08998 * 109.47624 * 180.02562 * 7 6 5 37 37 H 1.09004 * 109.47261 * 180.02562 * 8 7 6 38 38 H 1.09002 * 109.47153 * 60.00008 * 8 7 6 39 39 H 0.97000 * 119.99708 * 359.97438 * 13 11 9 40 40 H 1.09002 * 109.47391 * 59.99686 * 14 13 11 41 41 H 1.09001 * 109.46813 * 299.99742 * 14 13 11 42 42 H 0.96995 * 120.00011 * 0.02562 * 17 15 14 43 43 H 0.97000 * 119.99884 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6353 2.1265 1.3074 6 6 2.1448 3.5692 1.3072 7 6 3.6696 3.5716 1.1811 8 6 4.0743 2.8876 -0.1263 9 6 3.5648 1.4444 -0.1258 10 1 3.9995 0.9053 0.7160 11 6 3.9635 0.7706 -1.4136 12 8 3.1118 0.3326 -2.1576 13 7 5.2664 0.6549 -1.7383 14 6 5.6539 0.0005 -2.9904 15 6 7.1558 0.0022 -3.1143 16 8 7.8356 0.5006 -2.2421 17 7 7.7436 -0.5510 -4.1936 18 6 9.1100 -0.5499 -4.3060 19 1 9.7152 -0.1053 -3.5299 20 6 9.7159 -1.1197 -5.4190 21 7 8.9794 -1.6602 -6.3636 22 14 11.5777 -1.1188 -5.5719 23 1 12.1259 -2.3515 -4.9512 24 1 11.9564 -1.0767 -7.0071 25 1 12.1306 0.0724 -4.8788 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 2.0700 1.5874 2.1492 32 1 0.5490 2.1252 1.3970 33 1 1.8569 4.0563 2.2388 34 1 1.7098 4.1080 0.4654 35 1 4.1046 3.0327 2.0229 36 1 4.0326 4.5993 1.1814 37 1 5.1606 2.8889 -0.2159 38 1 3.6393 3.4264 -0.9680 39 1 5.9475 1.0056 -1.1433 40 1 5.2196 0.5402 -3.8320 41 1 5.2901 -1.0270 -2.9910 42 1 7.1999 -0.9499 -4.8908 43 1 9.4025 -2.0583 -7.1404 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344150772.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:13 Heat of formation + Delta-G solvation = -131.752362 kcal Electronic energy + Delta-G solvation = -22454.866973 eV Core-core repulsion = 19111.486552 eV Total energy + Delta-G solvation = -3343.380421 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.54159 -40.21901 -38.70781 -36.28548 -35.49841 -34.53075 -33.39705 -32.24882 -29.91930 -29.14724 -26.53222 -24.68676 -24.26214 -21.60949 -21.43488 -21.32449 -20.63675 -20.06094 -18.55959 -17.37658 -16.95696 -16.72889 -16.46356 -15.95796 -15.78456 -15.60149 -15.44003 -15.07822 -14.83033 -14.22041 -14.12348 -14.01801 -13.56913 -13.55249 -13.41549 -13.31773 -12.91395 -12.49591 -12.47107 -12.37163 -12.13439 -12.07163 -11.93304 -11.60473 -11.58136 -11.46962 -11.29363 -10.86190 -10.57845 -10.41216 -10.15320 -10.06717 -8.52349 -6.02824 1.35442 1.42030 1.54747 1.61748 1.89651 2.06280 2.32187 3.11569 3.14759 3.59898 3.69195 3.77617 4.12410 4.18008 4.25737 4.32149 4.38849 4.41746 4.44326 4.46164 4.50885 4.55293 4.64041 4.80521 4.87009 4.98091 5.05489 5.14488 5.21877 5.23815 5.28689 5.29893 5.36803 5.37763 5.42608 5.46213 5.63270 5.66831 5.90574 6.45032 6.55799 7.01996 7.21372 7.42939 7.92680 8.64603 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.031978 B = 0.003171 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.380674 B = 8828.393738 C = 9505.651253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.134 4.134 3 C -0.060 4.060 4 H 0.058 0.942 5 C -0.110 4.110 6 C -0.120 4.120 7 C -0.114 4.114 8 C -0.111 4.111 9 C -0.094 4.094 10 H 0.110 0.890 11 C 0.513 3.487 12 O -0.570 6.570 13 N -0.709 5.709 14 C 0.121 3.879 15 C 0.432 3.568 16 O -0.623 6.623 17 N -0.560 5.560 18 C -0.338 4.338 19 H 0.087 0.913 20 C -0.011 4.011 21 N -0.917 5.917 22 Si 0.997 3.003 23 H -0.270 1.270 24 H -0.272 1.272 25 H -0.269 1.269 26 H 0.051 0.949 27 H 0.068 0.932 28 H 0.044 0.956 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.058 0.942 39 H 0.412 0.588 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.398 0.602 43 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.176 7.260 14.067 21.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.172 4.172 3 C -0.079 4.079 4 H 0.077 0.923 5 C -0.147 4.147 6 C -0.157 4.157 7 C -0.151 4.151 8 C -0.149 4.149 9 C -0.115 4.115 10 H 0.128 0.872 11 C 0.301 3.699 12 O -0.450 6.450 13 N -0.363 5.363 14 C -0.007 4.007 15 C 0.220 3.780 16 O -0.511 6.511 17 N -0.195 5.195 18 C -0.467 4.467 19 H 0.105 0.895 20 C -0.211 4.211 21 N -0.557 5.557 22 Si 0.820 3.180 23 H -0.195 1.195 24 H -0.196 1.196 25 H -0.194 1.194 26 H 0.070 0.930 27 H 0.087 0.913 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.250 0.750 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.232 0.768 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.261 7.173 13.902 21.168 hybrid contribution 1.050 -0.384 -0.814 1.383 sum -13.211 6.789 13.088 19.797 Atomic orbital electron populations 1.21728 0.95104 1.01502 1.01788 1.21795 0.96840 0.96479 1.02070 1.20911 0.91526 0.96572 0.98863 0.92332 1.21634 1.01469 0.95634 0.95981 1.21571 0.95241 0.96554 1.02367 1.21519 0.96451 1.00911 0.96215 1.21558 1.00808 0.92819 0.99725 1.21437 0.98627 0.97519 0.93934 0.87202 1.21312 0.81094 0.78653 0.88804 1.90610 1.50331 1.50470 1.53620 1.45833 1.08385 1.59612 1.22485 1.20747 0.91304 0.99797 0.88856 1.20438 0.90245 0.83691 0.83674 1.90468 1.65983 1.52155 1.42522 1.41856 1.07439 1.50787 1.19422 1.19748 0.82541 1.37847 1.06583 0.89539 1.26138 1.05232 0.95341 0.94412 1.69684 1.38128 1.37774 1.10090 0.84864 0.76339 0.78943 0.77828 1.19522 1.19641 1.19377 0.92963 0.91273 0.93691 0.92202 0.92073 0.91062 0.90602 0.90366 0.92415 0.90846 0.90829 0.91503 0.92318 0.74978 0.89143 0.89069 0.76766 0.91054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.67 71.98 0.70 -2.00 16 2 C -0.13 -3.00 5.14 30.60 0.16 -2.84 16 3 C -0.06 -1.23 1.36 -10.79 -0.01 -1.25 16 4 H 0.06 1.41 8.10 -2.39 -0.02 1.39 16 5 C -0.11 -1.60 4.96 30.59 0.15 -1.45 16 6 C -0.12 -1.60 5.92 30.59 0.18 -1.42 16 7 C -0.11 -1.65 5.92 30.59 0.18 -1.47 16 8 C -0.11 -2.18 5.10 30.61 0.16 -2.03 16 9 C -0.09 -2.09 2.06 -11.52 -0.02 -2.11 16 10 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 11 C 0.51 15.61 6.83 87.66 0.60 16.21 16 12 O -0.57 -20.59 13.67 -3.02 -0.04 -20.63 16 13 N -0.71 -23.27 5.42 -466.78 -2.53 -25.80 16 14 C 0.12 4.47 6.15 85.63 0.53 5.00 16 15 C 0.43 20.07 7.85 87.66 0.69 20.76 16 16 O -0.62 -32.20 15.24 -3.07 -0.05 -32.25 16 17 N -0.56 -28.28 5.29 -306.98 -1.62 -29.90 16 18 C -0.34 -18.67 9.68 84.04 0.81 -17.86 16 19 H 0.09 5.02 7.16 -2.91 -0.02 5.00 16 20 C -0.01 -0.55 5.50 84.92 0.47 -0.09 16 21 N -0.92 -48.88 13.05 21.66 0.28 -48.60 16 22 Si 1.00 41.75 29.55 68.60 2.03 43.78 16 23 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 24 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 25 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 26 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.07 1.02 6.56 -2.39 -0.02 1.01 16 28 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.06 1.75 5.42 -2.38 -0.01 1.74 16 30 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.08 0.99 6.57 -2.39 -0.02 0.97 16 33 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.07 1.38 7.57 -2.38 -0.02 1.36 16 38 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.41 13.35 6.86 -92.71 -0.64 12.71 16 40 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 41 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 42 H 0.40 19.40 7.90 -92.71 -0.73 18.67 16 43 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 Total: -1.00 -63.90 341.83 2.29 -61.60 By element: Atomic # 1 Polarization: 42.70 SS G_CDS: -0.35 Total: 42.35 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: 4.58 Total: 9.46 kcal Atomic # 7 Polarization: -100.44 SS G_CDS: -3.87 Total: -104.31 kcal Atomic # 8 Polarization: -52.79 SS G_CDS: -0.09 Total: -52.88 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Total: -63.90 2.29 -61.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344150772.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.148 kcal (2) G-P(sol) polarization free energy of solvation -63.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds