Wall clock time and date at job start Tue Mar 31 2020 02:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47225 * 2 1 4 4 H 1.09007 * 109.47406 * 305.00598 * 3 2 1 5 5 C 1.53007 * 109.46595 * 65.00060 * 3 2 1 6 6 C 1.53007 * 109.46813 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.46909 * 300.00040 * 6 5 3 8 8 C 1.52999 * 109.47220 * 60.00752 * 7 6 5 9 9 C 1.52990 * 109.47464 * 185.00054 * 3 2 1 10 10 H 1.09002 * 109.47337 * 60.00529 * 9 3 2 11 11 C 1.50703 * 109.47398 * 300.00444 * 9 3 2 12 12 O 1.21283 * 119.99488 * 359.97438 * 11 9 3 13 13 N 1.34777 * 120.00290 * 180.02562 * 11 9 3 14 14 C 1.46498 * 119.99828 * 180.27728 * 13 11 9 15 15 C 1.50700 * 109.46769 * 179.72341 * 14 13 11 16 16 O 1.21284 * 120.00579 * 359.97438 * 15 14 13 17 17 N 1.34783 * 119.99600 * 179.97438 * 15 14 13 18 18 C 1.37103 * 119.99831 * 179.97438 * 17 15 14 19 19 H 1.07999 * 119.99608 * 0.02562 * 18 17 15 20 20 C 1.38942 * 119.99955 * 179.97438 * 18 17 15 21 21 N 1.31414 * 120.00352 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00224 * 180.02562 * 20 18 17 23 23 H 1.48510 * 109.46626 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.47005 * 119.99998 * 22 20 18 25 25 H 1.48494 * 109.47261 * 240.00388 * 22 20 18 26 26 H 1.08997 * 109.46921 * 299.99308 * 1 2 3 27 27 H 1.09004 * 109.46894 * 59.99876 * 1 2 3 28 28 H 1.08992 * 109.47059 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46744 * 240.00432 * 2 1 3 30 30 H 1.08998 * 109.47317 * 120.00679 * 2 1 3 31 31 H 1.08993 * 109.47164 * 60.00638 * 5 3 2 32 32 H 1.09001 * 109.47526 * 299.99724 * 5 3 2 33 33 H 1.08997 * 109.47058 * 180.02562 * 6 5 3 34 34 H 1.08998 * 109.46963 * 59.99957 * 6 5 3 35 35 H 1.08993 * 109.47699 * 299.99744 * 7 6 5 36 36 H 1.09006 * 109.46910 * 180.02562 * 7 6 5 37 37 H 1.09001 * 109.47330 * 180.02562 * 8 7 6 38 38 H 1.08993 * 109.47608 * 59.98936 * 8 7 6 39 39 H 0.97001 * 119.99727 * 359.97438 * 13 11 9 40 40 H 1.09004 * 109.46963 * 299.72135 * 14 13 11 41 41 H 1.08994 * 109.47567 * 59.72287 * 14 13 11 42 42 H 0.96995 * 120.00445 * 0.02562 * 17 15 14 43 43 H 0.97000 * 120.00497 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6353 2.1264 1.3075 6 6 2.1458 3.5688 1.3078 7 6 3.6707 3.5700 1.1824 8 6 4.0754 2.8862 -0.1251 9 6 3.5648 1.4444 -0.1257 10 1 3.8532 0.9572 -1.0572 11 6 4.1658 0.6990 1.0381 12 8 3.4454 0.2145 1.8849 13 7 5.5038 0.5718 1.1383 14 6 6.0877 -0.1579 2.2665 15 6 7.5894 -0.1602 2.1400 16 8 8.1197 0.3929 1.1999 17 7 8.3431 -0.7769 3.0718 18 6 9.7093 -0.7794 2.9565 19 1 10.1814 -0.2869 2.1193 20 6 10.4864 -1.4147 3.9173 21 7 9.9119 -2.0136 4.9362 22 14 12.3478 -1.4176 3.7607 23 1 12.7424 -0.6798 2.5337 24 1 12.9455 -0.7569 4.9487 25 1 12.8352 -2.8177 3.6752 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 2.0699 1.5874 2.1492 32 1 0.5489 2.1252 1.3970 33 1 1.8579 4.0559 2.2393 34 1 1.7116 4.1081 0.4660 35 1 4.1050 3.0308 2.0241 36 1 4.0344 4.5976 1.1830 37 1 5.1618 2.8866 -0.2143 38 1 3.6411 3.4254 -0.9668 39 1 6.0799 0.9597 0.4612 40 1 5.8024 0.3274 3.1999 41 1 5.7213 -1.1845 2.2639 42 1 7.9191 -1.2196 3.8235 43 1 10.4544 -2.4567 5.6072 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344150774.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:15 Heat of formation + Delta-G solvation = -107.362736 kcal Electronic energy + Delta-G solvation = -22843.514377 eV Core-core repulsion = 19501.191570 eV Total energy + Delta-G solvation = -3342.322807 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.67157 -38.46864 -37.11872 -34.63446 -34.03551 -33.42901 -31.46602 -31.17222 -29.00477 -27.61100 -24.70624 -23.82169 -23.09195 -21.04030 -20.59611 -19.70728 -19.18734 -18.05426 -16.62538 -16.03034 -15.60070 -15.45286 -15.05999 -14.72323 -14.39632 -14.20688 -14.00865 -13.69723 -13.48274 -13.28585 -13.25355 -12.61836 -12.22496 -12.20720 -12.00509 -11.83301 -11.64458 -11.50044 -11.38986 -11.15483 -11.03430 -10.77296 -10.53196 -10.41846 -10.33234 -10.02380 -9.97596 -9.65706 -9.17545 -8.70779 -8.63846 -8.11070 -6.52538 -3.94588 2.87715 3.09484 3.21434 3.27528 3.43899 3.73344 4.10730 4.53454 4.66279 4.69062 4.87993 5.04683 5.09045 5.16050 5.19648 5.23129 5.33512 5.41689 5.45990 5.52803 5.64811 5.68729 5.78442 5.87207 5.91381 5.94736 5.96541 5.99690 6.07017 6.11044 6.19930 6.21400 6.23618 6.38050 6.50627 6.57148 6.85254 7.45184 7.86301 7.91583 8.43719 8.53238 9.03777 9.38486 9.86301 10.64418 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.031871 B = 0.003357 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.326149 B = 8338.617504 C = 8672.942282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.134 4.134 3 C -0.060 4.060 4 H 0.069 0.931 5 C -0.130 4.130 6 C -0.118 4.118 7 C -0.123 4.123 8 C -0.111 4.111 9 C -0.104 4.104 10 H 0.094 0.906 11 C 0.519 3.481 12 O -0.541 6.541 13 N -0.708 5.708 14 C 0.109 3.891 15 C 0.428 3.572 16 O -0.597 6.597 17 N -0.550 5.550 18 C -0.305 4.305 19 H 0.106 0.894 20 C 0.025 3.975 21 N -0.895 5.895 22 Si 0.932 3.068 23 H -0.267 1.267 24 H -0.280 1.280 25 H -0.280 1.280 26 H 0.055 0.945 27 H 0.046 0.954 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.409 0.591 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.396 0.604 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.478 7.148 -7.797 18.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.172 4.172 3 C -0.079 4.079 4 H 0.087 0.913 5 C -0.167 4.167 6 C -0.155 4.155 7 C -0.161 4.161 8 C -0.149 4.149 9 C -0.125 4.125 10 H 0.112 0.888 11 C 0.306 3.694 12 O -0.420 6.420 13 N -0.361 5.361 14 C -0.019 4.019 15 C 0.214 3.786 16 O -0.484 6.484 17 N -0.185 5.185 18 C -0.434 4.434 19 H 0.124 0.876 20 C -0.177 4.177 21 N -0.535 5.535 22 Si 0.759 3.241 23 H -0.191 1.191 24 H -0.206 1.206 25 H -0.206 1.206 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.247 0.753 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.229 0.771 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.509 7.052 -7.635 18.669 hybrid contribution 1.043 -0.185 0.127 1.067 sum -14.466 6.866 -7.508 17.685 Atomic orbital electron populations 1.21777 0.96410 1.01102 1.01287 1.21842 0.95445 0.96436 1.03450 1.20901 0.92023 0.96648 0.98316 0.91295 1.21901 1.00313 0.95198 0.99282 1.21536 0.95447 0.97363 1.01178 1.21565 0.96305 1.00503 0.97704 1.21532 1.01133 0.93600 0.98645 1.21401 0.96981 0.96617 0.97550 0.88785 1.20488 0.81796 0.79858 0.87263 1.90540 1.59833 1.49182 1.42406 1.45790 1.06809 1.56020 1.27526 1.20928 0.93003 0.97727 0.90223 1.19779 0.87777 0.85412 0.85665 1.90492 1.73495 1.50126 1.34284 1.41813 1.07056 1.47056 1.22534 1.19779 0.80729 1.33245 1.09649 0.87640 1.25324 1.01035 0.96202 0.95171 1.69621 1.36817 1.35072 1.11983 0.85763 0.81787 0.78071 0.78506 1.19124 1.20612 1.20603 0.92597 0.93490 0.93216 0.92989 0.88847 0.88786 0.92387 0.92342 0.92528 0.91785 0.91894 0.91128 0.90967 0.75261 0.90007 0.89987 0.77064 0.91641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.67 37.16 0.36 -1.09 16 2 C -0.13 -1.54 5.03 -26.73 -0.13 -1.67 16 3 C -0.06 -0.65 1.93 -90.62 -0.18 -0.83 16 4 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 5 C -0.13 -1.48 4.69 -26.72 -0.13 -1.60 16 6 C -0.12 -1.21 5.92 -26.73 -0.16 -1.36 16 7 C -0.12 -1.36 5.70 -26.73 -0.15 -1.52 16 8 C -0.11 -1.16 5.35 -26.75 -0.14 -1.30 16 9 C -0.10 -1.20 2.54 -91.80 -0.23 -1.43 16 10 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 11 C 0.52 7.70 5.36 -10.98 -0.06 7.64 16 12 O -0.54 -9.15 11.36 5.55 0.06 -9.09 16 13 N -0.71 -11.46 5.42 -61.47 -0.33 -11.79 16 14 C 0.11 1.98 6.15 -5.19 -0.03 1.95 16 15 C 0.43 9.74 7.85 -10.98 -0.09 9.66 16 16 O -0.60 -15.17 15.24 5.55 0.08 -15.09 16 17 N -0.55 -13.58 5.29 -10.96 -0.06 -13.64 16 18 C -0.30 -8.26 9.68 -14.93 -0.14 -8.40 16 19 H 0.11 2.99 7.16 -52.49 -0.38 2.61 16 20 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 21 N -0.89 -23.85 13.05 55.50 0.72 -23.13 16 22 Si 0.93 20.48 29.55 -169.99 -5.02 15.46 16 23 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 24 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 25 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 26 H 0.06 0.54 6.56 -51.93 -0.34 0.20 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.09 1.32 5.64 -51.93 -0.29 1.02 16 31 H 0.09 1.33 5.51 -51.93 -0.29 1.05 16 32 H 0.06 0.61 6.57 -51.93 -0.34 0.26 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.85 7.21 -51.93 -0.37 0.48 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.76 7.56 -51.93 -0.39 0.37 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.41 6.62 6.85 -40.82 -0.28 6.34 16 40 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 41 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 42 H 0.40 9.42 7.90 -40.82 -0.32 9.10 16 43 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 335.45 15.07 5.06 5.06 Total: -1.00 -29.33 335.45 -7.46 -36.79 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: -6.79 Total: 14.82 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: -1.18 Total: 0.61 kcal Atomic # 7 Polarization: -48.89 SS G_CDS: 0.33 Total: -48.56 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: 0.15 Total: -24.17 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.33 -7.46 -36.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344150774.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.569 kcal (2) G-P(sol) polarization free energy of solvation -29.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds