Wall clock time and date at job start Tue Mar 31 2020 02:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47175 * 2 1 4 4 C 1.52996 * 109.46969 * 119.99828 * 2 1 3 5 5 C 1.53006 * 109.47353 * 65.00027 * 4 2 1 6 6 H 1.09004 * 109.29869 * 304.58480 * 5 4 2 7 7 C 1.52919 * 109.30274 * 184.99754 * 5 4 2 8 8 C 1.53345 * 108.67265 * 189.14342 * 7 5 4 9 9 H 1.09002 * 109.67495 * 187.30573 * 8 7 5 10 10 C 1.50702 * 109.67324 * 307.79475 * 8 7 5 11 11 O 1.21297 * 119.99627 * 93.65138 * 10 8 7 12 12 N 1.34777 * 120.00491 * 273.65157 * 10 8 7 13 13 C 1.46504 * 119.99377 * 359.97438 * 12 10 8 14 14 C 1.37091 * 120.00286 * 179.97438 * 12 10 8 15 15 H 1.08000 * 120.00099 * 339.12908 * 14 12 10 16 16 C 1.38954 * 119.99758 * 158.84937 * 14 12 10 17 17 N 1.31410 * 120.00429 * 345.29674 * 16 14 12 18 18 Si 1.86805 * 120.00063 * 165.29007 * 16 14 12 19 19 H 1.48496 * 109.47173 * 94.95546 * 18 16 14 20 20 H 1.48501 * 109.47222 * 214.95895 * 18 16 14 21 21 H 1.48506 * 109.46967 * 334.95663 * 18 16 14 22 22 C 1.53070 * 108.42750 * 67.52948 * 8 7 5 23 23 C 1.50179 * 109.88602 * 311.08357 * 22 8 7 24 24 O 1.21285 * 118.24304 * 197.57646 * 23 22 8 25 25 N 1.33354 * 123.50819 * 17.61863 * 23 22 8 26 26 H 1.09005 * 109.47177 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47003 * 300.00136 * 1 2 3 28 28 H 1.08999 * 109.47386 * 59.99699 * 1 2 3 29 29 H 1.09002 * 109.47003 * 239.99864 * 2 1 3 30 30 H 1.09002 * 109.47219 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.47209 * 300.00409 * 3 2 1 32 32 H 1.09002 * 109.47266 * 60.00026 * 3 2 1 33 33 H 1.08996 * 109.47640 * 304.99897 * 4 2 1 34 34 H 1.09000 * 109.46866 * 184.99677 * 4 2 1 35 35 H 1.08993 * 109.60069 * 69.38958 * 7 5 4 36 36 H 1.08992 * 109.60132 * 308.89495 * 7 5 4 37 37 H 1.09000 * 109.46737 * 264.45504 * 13 12 10 38 38 H 1.08993 * 109.47189 * 24.46060 * 13 12 10 39 39 H 1.09004 * 109.46748 * 144.46353 * 13 12 10 40 40 H 0.96995 * 120.00126 * 180.02562 * 17 16 14 41 41 H 1.09002 * 109.39765 * 71.22896 * 22 8 7 42 42 H 1.08996 * 109.39921 * 190.97378 * 22 8 7 43 43 H 0.96998 * 117.94223 * 177.75062 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6352 -2.1955 1.1880 6 1 0.5551 -2.2675 1.0602 7 6 2.0369 -2.8845 2.4928 8 6 1.8373 -4.3963 2.3312 9 1 1.9942 -4.8917 3.2894 10 6 0.4401 -4.6740 1.8395 11 8 0.2274 -4.7899 0.6509 12 7 -0.5730 -4.7935 2.7202 13 6 -0.3159 -4.6541 4.1557 14 6 -1.8441 -5.0456 2.2727 15 1 -2.1114 -4.8206 1.2508 16 6 -2.7869 -5.5960 3.1325 17 7 -2.4044 -6.1394 4.2661 18 14 -4.5982 -5.5632 2.6768 19 1 -4.9671 -6.8438 2.0218 20 1 -5.4142 -5.3819 3.9042 21 1 -4.8532 -4.4377 1.7421 22 6 2.8549 -4.9123 1.3108 23 6 2.8297 -4.0485 0.0826 24 8 3.3202 -4.4858 -0.9369 25 7 2.2977 -2.8260 0.0531 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8934 -0.5139 -0.8900 30 1 3.1301 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6054 -0.2617 2.1370 34 1 3.1263 -0.6443 1.2951 35 1 1.4119 -2.5182 3.3072 36 1 3.0843 -2.6750 2.7095 37 1 -0.1723 -5.6406 4.5965 38 1 0.5813 -4.0541 4.3075 39 1 -1.1656 -4.1640 4.6311 40 1 -3.0625 -6.5239 4.8660 41 1 3.8521 -4.8886 1.7502 42 1 2.6053 -5.9375 1.0373 43 1 2.3551 -2.3252 -0.7756 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357607346.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:53 Heat of formation + Delta-G solvation = -84.404162 kcal Electronic energy + Delta-G solvation = -23944.958674 eV Core-core repulsion = 20603.631426 eV Total energy + Delta-G solvation = -3341.327249 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.48009 -38.18281 -37.26911 -35.12130 -34.47697 -32.61685 -31.46245 -30.09474 -27.20250 -26.87802 -26.22400 -24.95974 -23.17546 -22.07312 -20.36952 -19.59632 -18.01247 -16.92664 -16.73848 -15.96281 -15.77210 -15.43865 -14.76694 -14.55987 -14.32682 -14.11263 -13.79406 -13.55943 -13.25165 -13.14378 -12.67092 -12.37574 -12.16703 -12.07622 -11.75682 -11.50545 -11.39231 -11.36845 -11.24432 -11.18473 -10.89932 -10.78785 -10.71592 -10.62819 -10.39167 -10.34466 -10.25168 -9.24412 -9.05598 -8.56746 -8.34604 -7.70621 -6.34386 -3.89040 3.13333 3.22888 3.23504 3.28725 3.72589 3.85168 4.10438 4.56220 4.73619 4.78989 4.83903 4.97773 5.03482 5.17090 5.21407 5.26213 5.45907 5.55812 5.60127 5.64627 5.69896 5.71299 5.82352 5.83800 5.92466 5.94742 6.03187 6.12033 6.13973 6.23252 6.25100 6.31353 6.37617 6.50020 6.80308 7.17703 7.24329 7.54615 7.85288 8.09103 8.45480 8.75215 9.16663 9.40248 9.95820 10.68795 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016427 B = 0.005845 C = 0.005020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.133577 B = 4789.428983 C = 5575.978229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.099 4.099 3 C -0.145 4.145 4 C -0.125 4.125 5 C 0.140 3.860 6 H 0.085 0.915 7 C -0.118 4.118 8 C -0.110 4.110 9 H 0.094 0.906 10 C 0.447 3.553 11 O -0.579 6.579 12 N -0.443 5.443 13 C 0.108 3.892 14 C -0.306 4.306 15 H 0.098 0.902 16 C 0.031 3.969 17 N -0.881 5.881 18 Si 0.923 3.077 19 H -0.278 1.278 20 H -0.283 1.283 21 H -0.270 1.270 22 C -0.112 4.112 23 C 0.545 3.455 24 O -0.576 6.576 25 N -0.703 5.703 26 H 0.064 0.936 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.067 0.933 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.030 0.970 39 H 0.063 0.937 40 H 0.267 0.733 41 H 0.094 0.906 42 H 0.101 0.899 43 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.051 11.941 1.449 14.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.117 4.117 3 C -0.202 4.202 4 C -0.163 4.163 5 C 0.035 3.965 6 H 0.103 0.897 7 C -0.156 4.156 8 C -0.132 4.132 9 H 0.113 0.887 10 C 0.234 3.766 11 O -0.463 6.463 12 N -0.161 5.161 13 C -0.036 4.036 14 C -0.434 4.434 15 H 0.116 0.884 16 C -0.172 4.172 17 N -0.520 5.520 18 Si 0.749 3.251 19 H -0.204 1.204 20 H -0.208 1.208 21 H -0.194 1.194 22 C -0.152 4.152 23 C 0.334 3.666 24 O -0.457 6.457 25 N -0.354 5.354 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.104 0.896 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.049 0.951 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.113 0.887 42 H 0.119 0.881 43 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 8.047 11.434 0.755 14.002 hybrid contribution -1.089 0.058 -0.077 1.093 sum 6.957 11.493 0.678 13.452 Atomic orbital electron populations 1.21931 0.94774 1.02788 1.01549 1.21118 0.96387 0.95994 0.98228 1.21826 1.00696 0.96015 1.01691 1.22059 1.01284 0.94355 0.98621 1.21012 0.98268 0.91222 0.86048 0.89677 1.21868 1.02299 0.94227 0.97229 1.21413 0.95202 0.96502 1.00069 0.88741 1.19817 0.85264 0.84532 0.86979 1.90573 1.83733 1.55979 1.16025 1.43572 1.06936 1.60493 1.05120 1.21568 0.98281 1.01045 0.82666 1.19635 0.85023 1.39696 0.98997 0.88393 1.25294 1.00518 0.95331 0.96044 1.70003 1.34456 1.36154 1.11429 0.85971 0.82257 0.78876 0.77954 1.20432 1.20823 1.19432 1.21406 0.99566 1.00796 0.93481 1.19774 0.75650 0.81132 0.90088 1.90675 1.48608 1.71583 1.34829 1.45339 1.58330 1.16760 1.14984 0.91658 0.92596 0.92920 0.91417 0.92871 0.92823 0.92671 0.90467 0.91405 0.89595 0.90757 0.91973 0.95138 0.91847 0.92302 0.88743 0.88105 0.77317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 8.95 37.16 0.33 -1.45 16 2 C -0.10 -1.04 2.84 -90.62 -0.26 -1.30 16 3 C -0.14 -1.27 9.19 37.16 0.34 -0.93 16 4 C -0.13 -1.34 4.32 -26.73 -0.12 -1.46 16 5 C 0.14 2.00 2.23 -68.37 -0.15 1.85 16 6 H 0.09 1.49 5.42 -51.93 -0.28 1.21 16 7 C -0.12 -1.59 4.77 -26.59 -0.13 -1.72 16 8 C -0.11 -1.85 2.19 -91.56 -0.20 -2.05 16 9 H 0.09 1.44 6.78 -51.93 -0.35 1.09 16 10 C 0.45 10.12 5.49 -10.98 -0.06 10.06 16 11 O -0.58 -15.29 14.15 5.54 0.08 -15.21 16 12 N -0.44 -10.67 3.02 -122.19 -0.37 -11.04 16 13 C 0.11 2.24 8.28 59.85 0.50 2.74 16 14 C -0.31 -8.24 9.30 -14.93 -0.14 -8.38 16 15 H 0.10 2.81 7.40 -52.49 -0.39 2.42 16 16 C 0.03 0.81 5.07 -17.47 -0.09 0.72 16 17 N -0.88 -22.88 10.69 55.50 0.59 -22.29 16 18 Si 0.92 20.44 29.58 -169.99 -5.03 15.41 16 19 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 20 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 21 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 22 C -0.11 -1.90 5.23 -28.10 -0.15 -2.05 16 23 C 0.55 10.42 6.38 -11.87 -0.08 10.34 16 24 O -0.58 -13.00 17.78 5.55 0.10 -12.90 16 25 N -0.70 -11.46 4.88 -54.85 -0.27 -11.72 16 26 H 0.06 0.92 6.47 -51.93 -0.34 0.59 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.75 6.45 -51.93 -0.34 0.42 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.09 1.08 7.02 -51.93 -0.36 0.72 16 36 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 37 H 0.06 1.38 7.36 -51.93 -0.38 0.99 16 38 H 0.03 0.50 5.07 -51.93 -0.26 0.23 16 39 H 0.06 1.38 7.29 -51.93 -0.38 1.01 16 40 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 41 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.10 1.89 8.10 -51.93 -0.42 1.47 16 43 H 0.39 6.02 6.89 -40.82 -0.28 5.74 16 LS Contribution 331.47 15.07 5.00 5.00 Total: -1.00 -32.33 331.47 -6.81 -39.14 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -6.72 Total: 7.24 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: -0.19 Total: 6.37 kcal Atomic # 7 Polarization: -45.01 SS G_CDS: -0.04 Total: -45.05 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: 0.18 Total: -28.11 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.03 Total: 15.41 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.33 -6.81 -39.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357607346.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.260 kcal (2) G-P(sol) polarization free energy of solvation -32.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds